IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.25	0	913..1185	-	90	147674855	-	VC0395_A0002	-	hypothetical protein
2	 50.66	0	1199..2260	-	353	147675529	mutY	VC0395_A0003	-	A/G-specific adenine glycosylase
3	 47.53	0	2281..2442	-	53	147674068	-	VC0395_A0004	-	hypothetical protein
4	 51.25	0	2500..3219	+	239	147674960	trmB	VC0395_A0005	-	tRNA (guanine-N(7))-methyltransferase
5	 51.42	0	3426..4376	+	316	147674885	-	VC0395_A0006	-	glutaminase
6	 52.04	+1	4597..5772	-	391	147675539	-	VC0395_A0007	-	coproporphyrinogen III oxidase
7	 53.07	+1	5766..6368	-	200	147673291	-	VC0395_A0008	-	putative deoxyribonucleotide triphosphate pyrophosphatase
8	 48.61	0	6438..6869	-	143	147673975	-	VC0395_A0009	-	hypothetical protein
9	 52.58	+1	6915..7205	-	96	147674564	-	VC0395_A0010	-	hypothetical protein
10	 50.54	0	7205..7762	-	185	147675181	-	VC0395_A0011	-	hypothetical protein
11	 53.97	+1	7816..8634	-	272	147673294	proC	VC0395_A0012	-	pyrroline-5-carboxylate reductase
12	 49.51	0	8687..9397	-	236	147673920	-	VC0395_A0013	-	hypothetical protein
13	 48.75	0	9423..10460	+	345	147674559	pilT-1	VC0395_A0014	-	twitching motility protein PilT
14	 50.59	0	10475..11581	+	368	147675116	pilU	VC0395_A0015	-	twitching motility protein PilU
15	 51.62	0	11693..12496	+	267	147675703	-	VC0395_A0016	-	LuxR family transcriptional regulator
16	 50.27	0	12581..13885	+	434	147673691	tyrS-1	VC0395_A0017	-	tyrosyl-tRNA synthetase
17	 51.06	0	13923..14345	-	140	147674125	-	VC0395_A0018	-	Holliday junction resolvase-like protein
18	 51.41	0	14426..15028	-	200	147674877	-	VC0395_A0019	-	hypothetical protein
19	 49.11	0	15025..15981	-	318	147673886	gshB	VC0395_A0020	-	glutathione synthetase
20	 51.23	0	15995..16726	-	243	147674458	-	VC0395_A0021	-	hypothetical protein
21	 50.29	0	16865..17560	-	231	147675504	dns	VC0395_A0022	-	extracellular deoxyribonuclease
22	 49.08	0	17690..18178	-	162	147673320	-	VC0395_A0023	-	hypothetical protein
23	 50.17	0	18289..19446	-	385	147673542	metK	VC0395_A0024	-	S-adenosylmethionine synthetase
24	 45.51	0	19619..19774	-	51	147674061	-	VC0395_A0025	-	hypothetical protein
25	 53.53	+1	19724..21808	+	694	147675757	tktA-1	VC0395_A0026	-	transketolase
26	 50.72	0	21880..22776	-	298	147674947	irgB	VC0395_A0027	-	iron-regulated virulence regulatory protein IrgB
27	 49.57	0	22921..24879	+	652	147674899	irgA	VC0395_A0028	-	enterobactin receptor protein
28	 46.63	0	24899..26056	+	385	147674116	epd	VC0395_A0029	-	erythrose 4-phosphate dehydrogenase
29	 49.11	0	26190..27368	+	392	147673541	pgk	VC0395_A0030	-	phosphoglycerate kinase
30	 47.26	0	27524..28600	+	358	147674645	fbaA	VC0395_A0031	-	fructose-bisphosphate aldolase
31	 45.14	0	28896..29759	+	287	147673216	-	VC0395_A0032	-	hypothetical protein
32	 45.44	0	29823..30458	-	211	147675146	-	VC0395_A0033	-	LysE family protein
33	 46.71	0	30623..31519	+	298	147674972	iciA	VC0395_A0034	-	chromosome replication initiation inhibitor protein
34	 46.44	0	31599..32315	+	238	147674164	-	VC0395_A0035	-	hypothetical protein
35	 39.39	-2	32648..32779	+	43	147675027	-	VC0395_A0036	-	hypothetical protein
36	 47.56	0	32851..34263	-	470	147674848	pykF	VC0395_A0037	-	pyruvate kinase
37	 45.21	0	34679..35461	+	260	147674087	-	VC0395_A0038	-	DeoR family transcriptional regulator
38	 49.43	0	35524..37356	+	610	147675377	glmS	VC0395_A0039	-	D-fructose-6-phosphate amidotransferase
39	 50.09	0	37417..38496	-	359	147675633	-	VC0395_A0040	-	putative extracellular solute-binding protein
40	 41.50	-1	38638..38784	-	48	147675186	-	VC0395_A0041	-	hypothetical protein
41	 48.32	0	38753..40513	-	586	147673361	-	VC0395_A0042	-	hypothetical protein
42	 47.37	0	41202..43067	-	621	147674012	rpoD	VC0395_A0044	-	RNA polymerase sigma factor RpoD
43	 46.28	0	43166..44995	-	609	147674914	dnaG	VC0395_A0045	-	DNA primase
44	 49.32	0	45019..45462	-	147	147675525	-	VC0395_A0046	-	hypothetical protein
45	 50.46	0	45492..45707	-	71	147674201	rpsU	VC0395_A0047	-	30S ribosomal protein S21
46	 45.03	0	45735..45905	-	56	147674821	-	VC0395_A0048	-	hypothetical protein
47	 50.10	0	45948..46967	+	339	147675246	gcp	VC0395_A0049	-	O-sialoglycoprotein endopeptidase
48	 49.94	0	47121..47933	+	270	147673630	-	VC0395_A0050	-	putative beta-ketoadipate enol-lactone hydrolase
49	 52.31	+1	47982..48608	-	208	147674048	-	VC0395_A0051	-	putative glycerol-3-phosphate acyltransferase PlsY
50	 53.33	+1	48761..49150	+	129	147674486	-	VC0395_A0052	-	putative dihydroneopterin aldolase FolB
51	 48.72	0	49147..49653	+	168	147673898	folK-1	VC0395_A0053	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
52	 45.77	0	49650..50453	+	267	147674526	-	VC0395_A0054	-	undecaprenyl pyrophosphate phosphatase
53	 49.14	0	50562..50852	+	96	147674770	ftsB	VC0395_A0055	-	cell division protein FtsB
54	 52.50	+1	50849..51547	+	232	147673316	ispD	VC0395_A0056	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
55	 51.78	+1	51544..52020	+	158	147673364	ispF	VC0395_A0057	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
56	 50.55	0	52050..53135	+	361	147673999	truD	VC0395_A0058	-	tRNA pseudouridine synthase D
57	 49.87	0	53098..53889	+	263	147674427	surE	VC0395_A0059	-	stationary phase survival protein SurE
58	 51.04	0	53882..54508	+	208	147675360	pcm	VC0395_A0060	-	protein-L-isoaspartate O-methyltransferase
59	 44.12	0	54508..55443	+	311	147673872	nlpD	VC0395_A0061	-	lipoprotein NlpD
60	 46.92	0	55517..56524	+	335	147674644	rpoS	VC0395_A0062	-	RNA polymerase sigma factor RpoS
61	 52.18	+1	56617..59205	-	862	147675773	mutS	VC0395_A0063	-	DNA mismatch repair protein
62	 52.14	+1	59473..60360	-	295	147673090	cysM	VC0395_A0064	-	cysteine synthase B
63	 48.90	0	60744..61745	+	333	147673555	cysP	VC0395_A0065	-	thiosulfate ABC transporter, periplasmic thiosulfate-binding protein
64	 51.29	0	61822..62673	+	283	147674327	cysT	VC0395_A0066	-	sulfate ABC transporter, permease protein
65	 51.50	0	62685..63548	+	287	147673965	cysW	VC0395_A0067	-	sulfate ABC transporter, permease protein
66	 50.84	0	63545..64675	+	376	147674663	cysA	VC0395_A0068	-	sulfate ABC transporter, ATP-binding protein
67	 51.28	0	64842..65348	+	168	147673308	-	VC0395_A0069	-	CinA family protein
68	 48.08	0	65482..66546	+	354	147673530	recA	VC0395_A0070	-	recombinase A
69	 47.93	0	66679..67137	+	152	147674135	recX	VC0395_A0071	-	recombination regulator RecX
70	 50.87	0	67310..69892	+	860	147675089	alaS	VC0395_A0072	-	alanyl-tRNA synthetase
71	 37.04	-2	69924..70058	+	44	147673460	-	VC0395_A0073	-	hypothetical protein
72	 47.64	0	70096..71283	+	395	147674175	-	VC0395_A0074	-	aspartate kinase
73	 46.97	0	71375..71572	+	65	147674619	csrA	VC0395_A0075	-	carbon storage regulator
74	 50.57	0	73142..73402	+	86	147675352	-	VC0395_A0084	-	oxaloacetate decarboxylase subunit gamma
75	 50.78	0	73431..75224	+	597	147673995	oadA-1	VC0395_A0085	-	pyruvate carboxylase subunit B
76	 51.11	0	75234..76364	+	376	147675475	oadB-1	VC0395_A0086	-	oxaloacetate decarboxylase, beta subunit
77	 51.18	0	76424..77437	+	337	147674535	-	VC0395_A0087	-	quinone oxidoreductase
78	 48.92	0	77431..77892	+	153	147673925	-	VC0395_A0088	-	hypothetical protein
79	 48.90	0	77899..80757	+	952	147673676	-	VC0395_A0089	-	insulinase family protease/insulinase family protease
80	 50.29	0	80869..82443	+	524	147675148	gshA	VC0395_A0090	-	glutamate--cysteine ligase
81	 48.55	0	82492..83010	+	172	147674316	luxS	VC0395_A0091	-	S-ribosylhomocysteinase
82	 46.53	0	83080..84360	-	426	147673693	-	VC0395_A0092	-	hypothetical protein
83	 45.90	0	84443..85246	-	267	147673303	-	VC0395_A0093	-	hypothetical protein
84	 49.93	0	85450..86835	+	461	147674906	ffh	VC0395_A0094	-	signal recognition particle protein
85	 49.40	0	87071..87319	+	82	147674693	rpsP	VC0395_A0095	-	30S ribosomal protein S16
86	 44.32	0	87347..87901	+	184	147674058	rimM	VC0395_A0096	-	16S rRNA-processing protein
87	 49.60	0	87929..88672	+	247	147675311	trmD	VC0395_A0097	-	tRNA (guanine-N(1)-)-methyltransferase
88	 46.61	0	88714..89067	+	117	147674723	rplS	VC0395_A0098	-	50S ribosomal protein L19
89	 49.10	0	89188..90246	-	352	147675045	degS	VC0395_A0099	-	protease DegS
90	 47.92	0	90423..91793	-	456	147673156	htrA	VC0395_A0100	-	protease DO
91	 46.80	0	91922..92359	-	145	147675673	-	VC0395_A0101	-	cytochrome d ubiquinol oxidase subunit III
92	 44.84	0	92513..93616	+	367	147674809	-	VC0395_A0102	-	hypothetical protein
93	 45.69	0	93840..94268	+	142	147674448	rplM	VC0395_A0103	-	50S ribosomal protein L13
94	 48.60	0	94284..94676	+	130	147673670	rpsI	VC0395_A0104	-	30S ribosomal protein S9
95	 47.81	0	95004..95597	+	197	147673531	petA	VC0395_A0105	-	ubiquinol--cytochrome c reductase, iron-sulfur subunit
96	 44.23	0	95597..96862	+	421	147674128	petB	VC0395_A0106	-	ubiquinol--cytochrome c reductase, cytochrome B
97	 44.44	0	96859..97596	+	245	147673543	petC	VC0395_A0107	-	ubiquinol--cytochrome c reductase, cytochrome c1
98	 43.55	-1	97696..98331	+	211	147675668	sspA	VC0395_A0108	-	stringent starvation protein A
99	 46.96	0	98331..98807	+	158	147675024	sspB	VC0395_A0109	-	ClpXP protease specificity-enhancing factor
100	 46.49	0	98875..99444	-	189	147673892	-	VC0395_A0110	-	putative lipoprotein
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.