IslandPath Analysis: Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.45   STD DEV: 3.29
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305, complete genome - 1..2516575
2446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.41	0	509..1876	+	455	73661310	dnaA	SSP0001	-	chromosomal replication initiation protein
2	 33.69	0	2124..3254	+	376	73661311	-	SSP0002	-	DNA polymerase III subunit beta
3	 37.33	+1	3815..4039	+	74	73661312	-	SSP0003	-	hypothetical protein
4	 34.23	0	4036..5151	+	371	73661313	recF	SSP0004	-	recombination protein F
5	 37.28	+1	5173..7098	+	641	73661314	-	SSP0005	-	DNA gyrase subunit B
6	 38.01	+1	7134..9827	+	897	73661315	-	SSP0006	-	DNA gyrase subunit A
7	 38.62	+1	9889..10701	-	270	73661316	-	SSP0007	-	hypothetical protein
8	 36.27	0	11098..12597	+	499	73661317	-	SSP0008	-	histidine ammonia-lyase
9	 37.23	+1	12929..14212	+	427	73661318	-	SSP0009	-	seryl-tRNA synthetase
10	 37.04	+1	14528..15229	+	233	73661319	-	SSP0010	-	putative branched-chain amino acid permease
11	 34.24	0	15226..15555	+	109	73661320	-	SSP0011	-	hypothetical protein
12	 37.15	+1	15827..16795	+	322	73661321	-	SSP0012	-	putative homoserine-o-acetyltransferase
13	 32.89	0	17076..17987	+	303	73661322	-	SSP0013	-	hypothetical protein
14	 36.69	0	18002..19969	+	655	73661323	-	SSP0014	-	hypothetical protein
15	 33.33	0	19966..20412	+	148	73661324	rplI	SSP0015	-	50S ribosomal protein L9
16	 38.94	+1	20443..21852	+	469	73661325	-	SSP0016	-	replicative DNA helicase
17	 38.01	+1	22148..23431	+	427	73661326	-	SSP0017	-	adenylosuccinate synthetase
18	 37.13	+1	23521..24732	-	403	73661327	-	SSP0018	-	putative glycosyltransferase
19	 33.55	0	25365..25823	+	152	73661328	-	SSP0019	-	putative transcriptional regulator
20	 38.73	+1	26277..27683	+	468	73661329	-	SSP0020	-	major facilitator superfamily permease
21	 36.32	0	28100..28801	+	233	73661330	-	SSP0021	-	response regulator
22	 37.92	+1	28814..30646	+	610	73661331	-	SSP0022	-	two-component sensor histidine kinase
23	 37.14	+1	30636..31976	+	446	73661332	-	SSP0023	-	hypothetical protein
24	 35.12	0	31977..32759	+	260	73661333	-	SSP0024	-	hypothetical protein
25	 39.77	+1	33192..33983	+	263	73661334	-	SSP0025	-	putative metal-dependent hydrolase
26	 38.54	+1	34583..35062	+	159	73661335	-	SSP0026	-	hypothetical protein
27	 26.54	-2	35198..36919	+	573	73661336	-	SSP0027	-	hypothetical protein
28	 28.08	-1	36942..37721	+	259	73661337	-	SSP0028	-	putative DNA modification methylase
29	 27.20	-1	37714..38757	+	347	73661338	-	SSP0029	-	putative modification methylase
30	 25.93	-2	38843..39355	-	170	73661339	-	SSP0030	-	putative replication protein RepA
31	 33.33	0	39676..40182	-	168	73661340	-	SSP0031	-	hypothetical protein
32	 32.37	0	40196..40507	-	103	73661341	-	SSP0032	-	hypothetical protein
33	 29.41	-1	40500..40601	-	33	73661342	-	SSP0033	-	hypothetical protein
34	 37.17	+1	40603..40941	-	112	73661343	-	SSP0034	-	hypothetical protein
35	 34.38	0	41416..43044	-	542	73661344	-	SSP0035	-	cassette chromosome recombinase B
36	 34.67	0	43065..44414	-	449	73661345	-	SSP0036	-	cassette chromosome recombinase A
37	 29.07	-1	44592..44849	-	85	73661346	-	SSP0037	-	hypothetical protein
38	 37.41	+1	44914..46704	-	596	73661347	-	SSP0038	-	hypothetical protein
39	 25.70	-2	46830..48257	-	475	73661348	-	SSP0039	-	hypothetical protein
40	 26.21	-2	48684..49877	+	397	73661349	-	SSP0040	-	hypothetical protein
41	 23.79	-2	50166..51905	+	579	73661350	-	SSP0041	-	hypothetical protein
42	 27.51	-1	51947..53422	+	491	73661351	-	SSP0042	-	hypothetical protein
43	 35.60	0	53649..54749	+	366	73661352	-	SSP0043	-	hypothetical protein
44	 32.42	0	55110..56750	+	546	73661353	-	SSP0044	-	hypothetical protein
45	 30.77	0	56743..56820	+	25	73661354	-	SSP0045	-	hypothetical protein
46	 34.11	0	56975..58657	+	560	73661355	-	SSP0046	-	cassette chromosome recombinase C
47	 36.58	0	58756..59094	+	112	73661356	-	SSP0047	-	hypothetical protein
48	 31.09	0	59190..59501	+	103	73661357	-	SSP0048	-	hypothetical protein
49	 30.37	0	59517..60023	+	168	73661358	-	SSP0049	-	hypothetical protein
50	 28.26	-1	60043..60180	+	45	73661359	-	SSP0050	-	hypothetical protein
51	 31.37	0	60351..60554	+	67	73661360	-	SSP0051	-	hypothetical protein
52	 27.67	-1	60680..61915	-	411	73661361	-	SSP0052	-	putative restriction endonuclease S subunit
53	 35.07	0	61908..63464	-	518	73661362	-	SSP0053	-	putative type I restriction-modification system methyltransferase subunit
54	 34.51	0	63578..66370	-	930	73661363	-	SSP0054	-	putative type I site-specific restriction-modification system restriction subunit
55	 30.82	0	66627..67700	+	357	73661364	-	SSP0055	-	hypothetical protein
56	 30.53	0	67735..68484	+	249	73661365	-	SSP0056	-	hypothetical protein
57	 32.54	0	68526..69032	+	168	73661366	-	SSP0057	-	hypothetical protein
58	 27.85	-1	69029..69502	+	157	73661367	-	SSP0058	-	hypothetical protein
59	 31.71	0	69784..70647	+	287	73661368	-	SSP0059	-	UTP-glucose-1-phosphate uridyltransferase
60	 28.25	-1	71017..71685	+	222	73661369	-	SSP0060	-	capsular polysaccharide biosynthesis protein
61	 29.29	-1	71701..72393	+	230	73661370	-	SSP0061	-	capsular polysaccharide synthesis protein
62	 30.46	0	72393..73157	+	254	73661371	-	SSP0062	-	capsular polysaccharide biosynthesis protein
63	 33.77	0	73181..75016	+	611	73661372	-	SSP0063	-	capsular polysaccharide biosynthesis protein
64	 24.31	-2	75001..75765	+	254	73661373	-	SSP0064	-	putative glycosyltransferase
65	 23.88	-2	75762..76850	+	362	73661374	-	SSP0065	-	putative glycosyl transferase
66	 21.62	-2	76840..78051	+	403	73661375	-	SSP0066	-	capsular polysaccharide synthesis protein
67	 25.11	-2	78051..79217	+	388	73661376	-	SSP0067	-	putative glycosyl transferase
68	 25.27	-2	79372..80376	+	334	73661377	-	SSP0068	-	putative UDP-glucose 6-dehydrogenase
69	 24.16	-2	80430..81650	-	406	73661378	-	SSP0069	-	putative polysaccharide polymerase
70	 27.60	-1	81821..82378	+	185	73661379	-	SSP0070	-	capsular polysaccharide synthesis protein
71	 28.12	-1	82573..82917	+	114	73661380	-	SSP0071	-	truncated capsular polysaccharide synthesis protein
72	 22.55	-2	83048..83251	+	67	73661381	-	SSP0072	-	truncated capsular polysaccharide synthesis protein
73	 33.23	0	84032..85018	+	328	73661382	-	SSP0073	-	putative restriction endonuclease
74	 29.95	-1	85137..88361	+	1074	73661383	-	SSP0074	-	hypothetical protein
75	 30.26	0	89179..89601	+	140	73661384	-	SSP0075	-	hypothetical protein
76	 26.65	-2	89858..91264	-	468	73661385	-	SSP0076	-	putative glycosyl transferase
77	 27.62	-1	92039..92248	+	69	73661386	-	SSP0077	-	hypothetical protein
78	 33.88	0	92485..93216	+	243	73661387	-	SSP0078	-	hypothetical protein
79	 31.69	0	93543..94334	-	263	73661388	-	SSP0079	-	hypothetical protein
80	 34.12	0	94318..95466	-	382	73661389	-	SSP0080	-	hypothetical protein
81	 34.47	0	95886..97382	-	498	73661390	-	SSP0081	-	malate:quinone oxidoreductase
82	 36.34	0	98147..99811	+	554	73661391	-	SSP0082	-	acetolactate synthase
83	 34.04	0	99870..100574	+	234	73661392	-	SSP0083	-	alpha-acetolactate decarboxylase
84	 36.20	0	100592..102196	+	534	73661393	-	SSP0084	-	putative L-lactate permease 2
85	 29.86	-1	102564..103196	-	210	73661394	-	SSP0085	-	truncated transcriptional regulator
86	 31.52	0	103656..104042	+	128	73661395	-	SSP0086	-	hypothetical protein
87	 32.71	0	104039..104836	+	265	73661396	-	SSP0087	-	hypothetical protein
88	 32.76	0	105104..106153	+	349	73661397	-	SSP0088	-	putative ABC transporter permease
89	 37.56	+1	106172..106834	+	220	73661398	-	SSP0089	-	ABC-type transport system ATPase component
90	 32.35	0	106907..107314	+	135	73661399	-	SSP0090	-	hypothetical protein
91	 36.17	0	107587..108891	+	434	73661400	-	SSP0091	-	putative monooxygenase
92	 39.23	+1	109057..109785	-	242	73661401	-	SSP0092	-	NAD-dependent deacetylase
93	 36.79	+1	109992..110858	+	288	73661402	-	SSP0093	-	hypothetical protein
94	 29.74	-1	111330..111719	-	129	73661403	-	SSP0094	-	transcriptional regulator
95	 36.17	0	112362..113207	+	281	73661404	-	SSP0095	-	putative acetyltransferase
96	 36.50	0	113511..114047	-	178	73661405	-	SSP0096	-	monooxygenase
97	 37.18	+1	114117..115025	-	302	73661406	-	SSP0097	-	beta-mannosidase precursor
98	 35.88	0	114929..116029	-	366	73661407	-	SSP0098	-	beta-D-mannosidase
99	 35.37	0	116129..116374	-	81	73661408	-	SSP0099	-	amidohydrolase
100	 32.16	0	116343..116852	-	169	73661409	-	SSP0100	-	amidohydrolase
33.45	MEAN

3.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.