IslandPath Analysis: Fusobacterium nucleatum subsp. nucleatum ATCC 25586



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.96   STD DEV: 3.77
Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome - 1..2174500
2067 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.49	0	77..709	-	210	19704828	-	FN1496	-	rod shape-determining protein mreC
2	 24.36	0	1104..2228	-	374	19704829	-	FN1497	-	multidrug resistance protein 2
3	 28.44	0	2703..3602	+	299	19704830	-	FN1498	-	integral membrane protein
4	 32.36	+1	3787..5226	+	479	19704831	-	FN1499	-	cell surface protein
5	 25.17	0	5283..6017	-	244	19704832	-	FN1500	-	nickel transport ATP-binding protein nikE
6	 24.39	0	6018..6800	-	260	19704833	-	FN1501	-	nickel transport ATP-binding protein nikD
7	 27.94	0	6797..7612	-	271	19704834	-	FN1502	-	nickel transport system permease protein nikC
8	 26.09	0	7593..8531	-	312	19704835	-	FN1503	-	nickel transport system permease protein nikB
9	 28.55	0	8537..10105	-	522	19704836	-	FN1504	-	nickel-binding protein
10	 30.17	0	10536..11009	+	157	19704837	-	FN1505	-	6,7-dimethyl-8-ribityllumazine synthase
11	 30.18	0	11011..12120	+	369	19704838	-	FN1506	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
12	 28.46	0	12312..12968	+	218	161485656	-	FN1507	-	riboflavin synthase subunit alpha
13	 30.67	0	12978..14177	+	399	19704840	-	FN1508	-	3,4-dihydroxy-2-butanone-4-phosphate synthase
14	 28.21	0	14189..14266	-	25	19704841	-	FN1509	-	hypothetical protein
15	 11.11	-2	14321..14401	-	26	19704842	-	FN1510	-	hypothetical protein
16	 25.51	0	14357..15838	+	493	19704843	-	FN1511	-	transposase
17	 24.77	0	15985..17175	+	396	19704844	-	FN1512	-	phophatidylinositol-4-phosphate 5-kinase
18	 22.69	-1	17147..17362	+	71	19704845	-	FN1513	-	phophatidylinositol-4-phosphate 5-kinase
19	 24.47	0	17516..19027	+	503	19704846	-	FN1514	-	phophatidylinositol-4-phosphate 5-kinase
20	 23.02	-1	19045..20712	+	555	19704847	-	FN1515	-	phophatidylinositol-4-phosphate 5-kinase
21	 23.08	-1	20754..20948	-	64	19704848	-	FN1516	-	hypothetical protein
22	 29.65	0	20966..23545	-	859	19704849	-	FN1517	-	leucyl-tRNA synthetase
23	 26.18	0	23553..24167	-	204	19704850	-	FN1518	-	RNA polymerase factor sigma-70
24	 27.38	0	24178..24882	-	234	19704851	-	FN1519	-	23S rRNA methyltransferase
25	 32.08	+1	24892..26163	-	423	19704852	-	FN1520	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
26	 30.78	+1	26528..27466	+	312	19704853	-	FN1521	-	peptide ABC transporter permease
27	 31.05	+1	27467..28297	+	276	19704854	-	FN1522	-	peptide ABC transporter permease
28	 30.99	+1	28347..29927	+	526	19704855	-	FN1523	-	dipeptide-binding protein
29	 31.68	+1	29939..30724	+	261	19704856	-	FN1524	-	peptide ABC transporter ATP-binding protein
30	 29.83	0	30663..31691	+	342	19704857	-	FN1525	-	peptide ABC transporter ATP-binding protein
31	 31.47	+1	31842..38273	-	2143	19704858	-	FN1526	-	hypothetical protein
32	 28.21	0	42273..42662	-	129	19704859	-	FN1527	-	hypothetical protein
33	 27.17	0	42678..43034	-	118	19704860	-	FN1528	-	hypothetical protein
34	 23.92	0	43083..43454	-	123	19704861	-	FN1529	-	hypothetical protein
35	 27.73	0	43765..44121	+	118	19704862	-	FN1530	-	transposase
36	 29.66	0	44326..45060	-	244	19704863	-	FN1531	-	negative regulator of murein hydrolase
37	 30.47	0	45026..45409	-	127	19704864	-	FN1532	-	murein hydrolase exporter
38	 30.35	0	45440..46411	-	323	19704865	-	FN1533	-	electron transfer flavoprotein subunit alpha
39	 31.41	+1	46423..47202	-	259	19704866	-	FN1534	-	electron transfer flavoprotein subunit beta
40	 32.72	+1	47214..48350	-	378	19704867	-	FN1535	-	Acyl-CoA dehydrogenase, short-chain specific
41	 32.14	+1	48381..49808	-	475	19704868	-	FN1536	-	(S)-2-hydroxy-acid oxidase chain D
42	 27.93	0	50036..51202	-	388	19704869	-	FN1537	-	arsenical pump-driving ATPase
43	 26.87	0	51199..52389	-	396	19704870	-	FN1538	-	arsenical pump-driving ATPase
44	 34.96	+2	52601..53152	+	183	19704871	-	FN1539	-	Iron-sulfur cluster-binding protein
45	 33.19	+1	53195..55354	+	719	19704872	-	FN1540	-	Iron-sulfur cluster-binding protein
46	 28.85	0	55355..56335	+	326	19704873	-	FN1541	-	heptaprenyl diphosphate synthase component II
47	 29.53	0	56332..57252	+	306	19704874	-	FN1542	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
48	 26.44	0	57254..57949	+	231	19704875	-	FN1543	-	ubiquinone/menaquinone biosynthesis methyltransferase UBIE
49	 35.80	+2	57975..59270	+	431	19704876	-	FN1544	-	electron transfer flavoprotein-quinone oxidoreductase ydiS
50	 28.77	0	59273..59557	+	94	19704877	-	FN1545	-	ferredoxin like protein
51	 30.34	0	59619..61691	-	690	19704878	-	FN1546	-	elongation factor G
52	 31.97	+1	61891..63360	-	489	19704879	-	FN1547	-	PTS permease for N-acetylglucosamine and glucose
53	 25.90	0	63594..64010	+	138	19704880	-	FN1548	-	hypothetical protein
54	 29.72	0	64029..64913	+	294	19704881	-	FN1549	-	stomatin like protein
55	 24.06	0	64977..65720	-	247	19704882	-	FN1550	-	hypothetical protein
56	 19.48	-1	65744..66277	-	177	19704883	-	FN1551	-	hypothetical protein
57	 22.96	-1	66291..67235	-	314	19704884	-	FN1552	-	hypothetical protein
58	 23.54	0	67240..68628	-	462	19704885	-	FN1553	-	transporter
59	 30.97	+1	68809..73557	-	1582	19704886	-	FN1554	-	hypothetical protein
60	 35.95	+2	76342..77526	-	394	19704887	-	FN1555	-	elongation factor Tu
61	 34.39	+1	77615..79696	-	693	19704888	-	FN1556	-	protein translation elongation factor G (EF-G)
62	 31.21	+1	79742..80212	-	156	19704889	-	FN1557	-	30S ribosomal protein S7
63	 35.23	+2	80240..80608	-	122	19704890	rpsL	FN1558	-	30S ribosomal protein S12
64	 26.64	0	80967..82550	+	527	19704891	-	FN1559	-	potassium/proton antiporter
65	 28.37	0	82569..83072	-	167	19704892	-	FN1560	-	hypothetical protein
66	 23.05	-1	83122..83850	-	242	19704893	-	FN1561	-	putative cytoplasmic protein
67	 28.66	0	83850..84854	-	334	19704894	-	FN1562	-	3-deoxy-7-phosphoheptulonate synthase
68	 22.73	-1	84867..85130	-	87	19704895	-	FN1563	-	hypothetical protein
69	 23.43	0	86283..86585	-	100	19704896	-	FN1575	-	putative cytoplasmic protein
70	 22.30	-1	86595..87464	-	289	19704897	-	FN1576	-	ATPase and helicase subunits involved in DNA replication
71	 31.78	+1	87467..88495	-	342	19704898	-	FN1577	-	rod shape-determining protein mreB
72	 26.41	0	88497..88886	-	129	19704899	-	FN1578	-	hypothetical protein
73	 29.54	0	88874..90295	-	473	19704900	-	FN1579	-	cysteinyl-tRNA synthetase
74	 24.86	0	90314..91009	-	231	19704901	-	FN1580	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
75	 28.54	0	90985..93321	-	778	19704902	-	FN1581	-	DNA mismatch repair protein mutS
76	 30.27	0	93677..95047	-	456	19704903	-	FN1582	-	hypothetical protein
77	 29.10	0	95129..95482	-	117	19704904	-	FN1583	-	hypothetical protein
78	 25.66	0	95454..96248	-	264	19704905	-	FN1584	-	Beta-lactamase
79	 33.67	+1	96303..97484	-	393	19704906	-	FN1585	-	hypothetical protein
80	 31.56	+1	97505..98632	-	375	19704907	-	FN1586	-	O-succinylbenzoate-CoA synthase
81	 19.81	-1	98981..99394	+	137	19704908	-	FN1587	-	acetyltransferase
82	 14.20	-2	99696..99857	+	53	19704909	-	FN1588	-	hypothetical protein
83	 26.21	0	99932..100591	+	219	19704910	-	FN1589	-	LexA repressor
84	 33.73	+1	100650..101894	-	414	19704911	-	FN1590	-	lipoprotein
85	 34.28	+1	102068..103225	-	385	19704912	-	FN1591	-	RNFB-related protein
86	 31.11	+1	103252..103836	-	194	19704913	-	FN1592	-	Na(+)-translocating NADH-quinone reductase subunit D
87	 29.94	0	103833..104450	-	205	19704914	-	FN1593	-	SoxR-reducing system protein RsxE
88	 33.33	+1	104450..104983	-	177	19704915	-	FN1594	-	nitrogen fixation protein RNFG
89	 33.97	+1	104973..105917	-	314	19704916	-	FN1595	-	Na(+)-translocating NADH-quinone reductase subunit B
90	 33.71	+1	105943..107268	-	441	19704917	-	FN1596	-	nitrogen fixation iron-sulphur protein RNFC
91	 26.91	0	107325..107900	-	191	19704918	-	FN1597	-	peptidyl-tRNA hydrolase
92	 21.84	-1	108069..108242	-	57	19704919	-	FN1598	-	hypothetical protein
93	 20.12	-1	108367..108873	-	168	19704920	-	FN1599	-	hypothetical protein
94	 26.08	0	109159..109902	-	247	19704921	-	FN1600	-	tRNA pseudouridine synthase A
95	 27.67	0	109922..110998	-	358	19704922	-	FN1601	-	putative cytoplasmic protein
96	 27.39	0	111112..111582	-	156	19704923	-	FN1602	-	putative cytoplasmic protein
97	 24.81	0	111700..113751	-	683	19704924	-	FN1603	-	2',3'-cyclic nucleotide 3'-phosphodiesterase
98	 28.48	0	113748..113912	-	54	19704925	-	FN1604	-	hypothetical protein
99	 31.30	+1	114089..115366	-	425	19704926	-	FN1605	-	adenylosuccinate synthetase
100	 24.28	0	115376..117298	-	640	19704927	-	FN1606	-	3-deoxy-D-manno-octulosonic-acid transferase
26.96	MEAN

3.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.