IslandPath Analysis: Lactobacillus acidophilus NCFM



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.79   STD DEV: 3.54
Lactobacillus acidophilus NCFM, complete genome - 1..1993560
1862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.60	0	31..1398	+	455	58336355	dnaA	LBA0001	-	chromosomal replication initiator protein
2	 33.42	0	1576..2706	+	376	58336356	dnaN	LBA0002	-	DNA polymerase III, beta chain
3	 35.50	0	2925..3155	+	76	58336357	-	LBA0003	-	hypothetical protein
4	 34.84	0	3155..4282	+	375	58336358	recF	LBA0004	-	recombination protein F
5	 39.03	+1	4283..6247	+	654	58336359	gyrB	LBA0005	-	DNA gyrase subunit B
6	 38.55	+1	6258..8732	+	824	58336360	gyrA	LBA0006	-	DNA gyrase subunit A
7	 40.74	+1	8933..9229	+	98	58336361	rpsF	LBA0007	-	30S ribosomal protein S6
8	 37.57	0	9275..9793	+	172	58336362	-	LBA0008	-	single-stranded DNA-binding protein
9	 41.77	+1	9822..10058	+	78	58336363	rpsR	LBA0009	-	30S ribosomal protein S18
10	 36.05	0	10237..12258	+	673	58336364	-	LBA0011	-	putative signaling protein
11	 37.72	0	12271..12726	+	151	58336365	rplI	LBA0012	-	50S ribosomal protein L9
12	 38.35	+1	12752..14146	+	464	58336366	dnaB	LBA0013	-	replicative DNA helicase
13	 38.00	0	14388..15329	+	313	58336367	-	LBA0014	-	putative alkylphosphonate ABC transporter
14	 35.81	0	15433..16362	+	309	58336368	-	LBA0015	-	hypothetical protein
15	 40.16	+1	16483..17361	+	292	58336369	-	LBA0016	-	fructokinase
16	 32.80	0	17507..17695	+	62	58336370	-	LBA0017	-	putative general stress response
17	 44.21	+2	17752..18036	-	94	58336371	-	LBA0018	-	hypothetical protein
18	 37.65	0	18057..19283	-	408	58336372	-	LBA0019	-	hypothetical protein
19	 27.47	-2	19827..20474	+	215	58336373	cadB	LBA0021	-	cadmium resistance protein
20	 29.38	-1	20491..20844	+	117	58336374	cadX	LBA0022	-	cadmium resistance regulatory protein
21	 27.55	-2	21324..22274	-	316	58336375	-	LBA0023	-	hypothetical protein
22	 35.90	0	22411..22722	+	103	58336376	-	LBA0024	-	hypothetical protein
23	 36.21	0	22722..23798	+	358	58336377	ftsK	LBA0025	-	putative cell division protein
24	 29.57	-1	23795..24325	+	176	58336378	-	LBA0026	-	hypothetical protein
25	 32.27	0	24511..25452	+	313	58336379	repB	LBA0027	-	putative replication initiator protein
26	 33.85	0	25673..25864	+	63	58336380	-	LBA0028	-	hypothetical protein
27	 30.99	-1	25928..27163	+	411	58336381	-	LBA0029	-	putative integrase
28	 27.78	-1	27424..27639	+	71	58336382	-	LBA0030	-	hypothetical protein
29	 29.35	-1	27643..28044	+	133	58336383	-	LBA0031	-	hypothetical protein
30	 38.83	+1	28644..28952	+	102	58336384	-	LBA0032	-	hypothetical protein
31	 38.91	+1	29358..30182	-	274	58336385	-	LBA0034	-	aminoglycoside N3'-acetyltransferase
32	 39.04	+1	30348..31748	+	466	58336386	-	LBA0035	-	cytosol non-specific dipeptidase
33	 24.85	-2	31916..33223	+	435	58336387	-	LBA0036	-	hypothetical protein
34	 31.58	0	33320..34117	+	265	58336388	-	LBA0037	-	hypothetical protein
35	 32.27	0	34136..34699	-	187	58336389	-	LBA0038	-	putative cobalamin adenosyltransferase
36	 31.81	0	34699..35223	-	174	58336390	-	LBA0039	-	hypothetical protein
37	 33.33	0	35227..35490	-	87	58336391	-	LBA0040	-	hypothetical protein
38	 38.61	+1	35642..37876	-	744	58336392	-	LBA0041	-	ribonucleoside triphosphate reductase
39	 33.24	0	38124..39164	+	346	58336393	-	LBA0043	-	putative permease
40	 31.41	0	39161..39733	+	190	58336394	-	LBA0044	-	putative esterase
41	 35.11	0	40163..41515	+	450	58336395	-	LBA0045	-	sugar transporter
42	 34.45	0	41634..41990	-	118	58336396	-	LBA0046	-	hypothetical protein
43	 33.86	0	42202..42963	-	253	58336397	-	LBA0047	-	ABC transporter ATP-binding protein
44	 36.01	0	42960..43856	-	298	58336398	-	LBA0048	-	ABC transporter membrane spanning permease
45	 38.37	+1	43853..44845	-	330	58336399	-	LBA0049	-	putative ABC transporter substrate binding protein
46	 34.03	0	45194..45907	+	237	58336400	-	LBA0050	-	putative hydrolase
47	 34.53	0	45976..47895	+	639	58336401	-	LBA0051	-	translation elongation factors
48	 32.36	0	48016..48834	+	272	58336402	-	LBA0052	-	putative hydrolase
49	 31.05	-1	48869..49087	-	72	58336403	-	LBA0053	-	hypothetical protein
50	 34.31	0	49012..49725	-	237	58336404	-	LBA0054	-	putative endonuclease-exonuclease-phosphatase family protein
51	 41.62	+1	50079..51128	-	349	58336405	ldhD	LBA0055	-	D-lactate dehydrogenase
52	 35.51	0	51696..52523	+	275	58336406	exoA	LBA0056	-	exodeoxyribonuclease A
53	 35.97	0	52583..54025	+	480	58336407	gadC	LBA0057	-	glutamategamma-aminobutyrate antiporter
54	 32.28	0	54086..56920	+	944	58336408	-	LBA0058	-	phage DEAD box family helicase
55	 34.67	0	56949..58073	-	374	58336409	pbpX	LBA0059	-	penicillin-binding protein
56	 30.68	-1	58261..58674	+	137	58336410	-	LBA0060	-	peptide deformylase
57	 36.52	0	65297..65641	+	114	58336411	-	LBA0062	-	hypothetical protein
58	 43.90	+2	65668..65790	+	40	58336412	-	LBA0063	-	putative fumarate reductase flavoprotein subunit
59	 38.29	0	65956..67146	+	396	58336413	-	LBA0064	-	fumarate reductase flavoprotein subunit
60	 27.10	-2	67176..67817	-	213	58336414	lysR	LBA0065	-	transcriptional regulator
61	 35.93	0	67978..68208	-	76	58336415	-	LBA0066	-	putative steroid binding protein
62	 34.02	0	68304..69173	-	289	58336416	arbZ	LBA0067	-	phospho-beta-glycosidase
63	 33.33	0	69170..70117	-	315	58336417	-	LBA0068	-	putative glycosyl transferase
64	 36.05	0	70130..71086	-	318	58336418	-	LBA0069	-	putative glucosyl transferase
65	 38.23	0	71116..71952	-	278	58336419	arbx	LBA0070	-	glycosyl transferase
66	 25.81	-2	72186..72278	-	30	58336420	-	LBA0071	-	hypothetical protein
67	 40.71	+1	72596..73354	-	252	58336421	-	LBA0072	-	hypothetical protein
68	 39.35	+1	73477..73941	+	154	58336422	-	LBA0073	-	hypothetical protein
69	 29.57	-1	74379..75971	+	530	58336423	-	LBA0074	-	ABC transporter bacteriocin
70	 31.07	-1	75973..77565	+	530	58336424	-	LBA0075	-	ABC transporter bacteriocin
71	 38.55	+1	77542..79248	-	568	58336425	-	LBA0077	-	transposase
72	 37.80	0	79913..80629	+	238	58336426	-	LBA0078	-	putative response regulator
73	 34.79	0	80698..82554	+	618	58336427	-	LBA0079	-	putative histidine kinase
74	 31.42	0	82535..83893	+	452	58336428	yycH	LBA0080	-	hypothetical protein
75	 33.09	0	83894..84718	+	274	58336429	yycI	LBA0081	-	hypothetical protein
76	 37.84	0	84727..85524	+	265	58336430	-	LBA0082	-	hypothetical protein
77	 38.44	+1	85570..86841	+	423	58336431	htrA	LBA0083	-	putative heat shock related serine protease
78	 36.04	0	87312..87791	+	159	58336432	-	LBA0084	-	SPOUT methyltransferase superfamily protein
79	 32.35	0	87843..88658	+	271	58336433	-	LBA0085	-	transcriptional regulator
80	 37.32	0	88840..89115	+	91	58336434	-	LBA0086	-	hypothetical protein
81	 32.72	0	89158..90615	+	485	58336435	-	LBA0087	-	putative protease
82	 26.67	-2	90778..90882	+	34	58336436	-	LBA0088	-	hypothetical protein
83	 35.42	0	90994..91185	+	63	58336437	-	LBA0089	-	hypothetical protein
84	 29.86	-1	91251..91940	+	229	58336438	-	LBA0091	-	hypothetical protein
85	 39.00	+1	91987..92868	-	293	58336439	-	LBA0092	-	prolyl aminopeptidase
86	 34.10	0	92877..93530	-	217	58336440	-	LBA0093	-	putative ABC transporter permease component
87	 35.48	0	93533..94882	-	449	58336441	-	LBA0094	-	ABC transporter ATP-binding protein
88	 32.91	0	95028..95969	+	313	58336442	-	LBA0095	-	putative regulatory protein
89	 40.02	+1	96007..96903	-	298	58336443	htpX	LBA0096	-	heat shock protein HtpX
90	 32.44	0	96920..97480	-	186	58336444	lemA	LBA0097	-	hypothetical protein
91	 34.87	0	97579..98685	-	368	58336445	-	LBA0098	-	cation transporter
92	 23.66	-2	98749..98841	+	30	58336446	-	LBA0099	-	hypothetical protein
93	 32.11	0	98869..99276	+	135	58336447	-	LBA0100	-	hypothetical protein
94	 29.52	-1	99286..101043	+	585	58336448	-	LBA0101	-	putative glycerophosphodiester phosphodiesterase
95	 39.72	+1	101104..101244	+	46	58336449	-	LBA0102	-	hypothetical protein
96	 27.64	-2	101346..102206	+	286	58336450	-	LBA0103	-	hypothetical protein
97	 23.90	-2	102190..102348	+	52	58336451	-	LBA0104	-	hypothetical protein
98	 32.70	0	102345..102815	+	156	58336452	ydaM	LBA0105	-	putative cellulose synthase
99	 31.64	0	102769..103653	+	294	58336453	ydaM	LBA0106	-	putative cellulose synthase
100	 32.80	0	103668..104792	+	374	58336454	-	LBA0107	-	putative beta-glucanase precursor
34.79	MEAN

3.54	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.