IslandPath Analysis: Roseiflexus sp. RS-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.36   STD DEV: 4.18
Roseiflexus sp. RS-1, complete genome - 1..5801598
4517 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.02	0	415..1860	+	481	148654189	-	RoseRS_0001	-	chromosomal replication initiator protein DnaA
2	 58.93	0	2021..3196	+	391	148654190	-	RoseRS_0002	-	class II aldolase/adducin family protein
3	 61.90	0	3243..3956	+	237	148654191	-	RoseRS_0003	-	short-chain dehydrogenase/reductase SDR
4	 62.85	0	4002..4865	-	287	148654192	-	RoseRS_0004	-	hypothetical protein
5	 59.33	0	5453..6856	-	467	148654193	-	RoseRS_0005	-	ferredoxin--NADP(+) reductase
6	 62.16	0	7035..7766	-	243	148654194	-	RoseRS_0006	-	hypothetical protein
7	 58.57	0	7768..8286	-	172	148654195	-	RoseRS_0007	-	hypothetical protein
8	 63.09	0	8314..9039	-	241	148654196	-	RoseRS_0008	-	phosphoglycerate mutase
9	 62.08	0	9360..10886	+	508	148654197	-	RoseRS_0009	-	deoxyribodipyrimidine photolyase-related protein
10	 56.57	0	11402..13084	+	560	148654198	-	RoseRS_0010	-	WD40 domain-containing protein
11	 63.47	0	13336..14148	+	270	148654199	-	RoseRS_0011	-	deoxyribodipyrimidine photolyase-like protein
12	 62.75	0	14156..15151	+	331	148654200	-	RoseRS_0012	-	phospholipid/glycerol acyltransferase
13	 61.62	0	15231..15686	+	151	148654201	-	RoseRS_0013	-	hypothetical protein
14	 60.85	0	15683..17470	+	595	148654202	-	RoseRS_0014	-	alpha amylase, catalytic region
15	 58.94	0	18072..18938	-	288	148654203	-	RoseRS_0015	-	short-chain dehydrogenase/reductase SDR
16	 60.33	0	18954..19379	-	141	148654204	-	RoseRS_0016	-	hypothetical protein
17	 60.88	0	19469..20176	-	235	148654205	-	RoseRS_0017	-	TetR family transcriptional regulator
18	 59.80	0	20290..20595	+	101	148654206	-	RoseRS_0018	-	hypothetical protein
19	 64.55	+1	21474..21662	+	62	148654207	-	RoseRS_0019	-	hypothetical protein
20	 47.12	-2	21659..21970	+	103	148654208	-	RoseRS_0020	-	hypothetical protein
21	 54.98	-1	21970..22200	+	76	148654209	-	RoseRS_0021	-	hypothetical protein
22	 54.76	-1	22266..22517	+	83	148654210	-	RoseRS_0022	-	hypothetical protein
23	 64.44	0	22552..24036	-	494	148654211	-	RoseRS_0023	-	O-succinylbenzoate-CoA ligase
24	 58.91	0	24033..24896	-	287	148654212	-	RoseRS_0024	-	naphthoate synthase
25	 63.24	0	25063..26814	-	583	148654213	-	RoseRS_0025	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
26	 60.82	0	26915..28282	-	455	148654214	-	RoseRS_0026	-	isochorismate synthase
27	 60.79	0	28272..28901	-	209	148654215	-	RoseRS_0027	-	TetR family transcriptional regulator
28	 58.36	0	29106..30236	+	376	148654216	-	RoseRS_0028	-	hypothetical protein
29	 54.78	-1	31039..31383	-	114	148654217	-	RoseRS_0029	-	anti-sigma-factor antagonist
30	 55.63	-1	31373..31807	-	144	148654218	-	RoseRS_0030	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
31	 59.59	0	31829..33397	-	522	148654219	-	RoseRS_0031	-	TPR repeat-containing protein
32	 61.02	0	33506..34603	-	365	148654220	-	RoseRS_0032	-	stage II sporulation E family protein
33	 61.10	0	34610..36082	-	490	148654221	-	RoseRS_0033	-	protein-glutamate O-methyltransferase
34	 61.88	0	36306..37454	-	382	148654222	-	RoseRS_0034	-	response regulator receiver modulated CheB methylesterase
35	 53.72	-1	37620..37982	-	120	148654223	-	RoseRS_0035	-	response regulator receiver protein
36	 61.60	0	38053..40281	-	742	148654224	-	RoseRS_0036	-	CheA signal transduction histidine kinase
37	 61.09	0	40342..41847	-	501	148654225	-	RoseRS_0037	-	methyl-accepting chemotaxis sensory transducer
38	 58.99	0	41856..42272	-	138	148654226	-	RoseRS_0038	-	hypothetical protein
39	 58.92	0	42595..43059	-	154	148654227	-	RoseRS_0039	-	putative CheW protein
40	 57.83	0	43467..45119	+	550	148654228	-	RoseRS_0040	-	ABC transporter related
41	 59.16	0	45116..46900	+	594	148654229	-	RoseRS_0041	-	ABC transporter, transmembrane region, type 1
42	 53.81	-1	46897..47316	+	139	148654230	-	RoseRS_0042	-	hypothetical protein
43	 62.46	0	47351..48706	-	451	148654231	-	RoseRS_0043	-	adenylosuccinate lyase
44	 61.11	0	48909..50042	+	377	148654232	-	RoseRS_0044	-	hypothetical protein
45	 61.20	0	50360..52096	-	578	148654233	-	RoseRS_0045	-	GTPase subunit of restriction endonuclease-like protein
46	 60.46	0	52288..53253	+	321	148654234	-	RoseRS_0046	-	hypothetical protein
47	 57.02	0	53374..55311	+	645	148654235	-	RoseRS_0047	-	DNA gyrase, B subunit
48	 59.56	0	55517..56149	-	210	148654236	-	RoseRS_0048	-	isochorismatase hydrolase
49	 61.42	0	56429..57343	-	304	148654237	-	RoseRS_0049	-	pyruvate carboxyltransferase
50	 59.01	0	57347..58561	-	404	148654238	-	RoseRS_0050	-	Formyl-CoA transferase
51	 54.68	-1	58619..59302	-	227	148654239	-	RoseRS_0051	-	GntR family transcriptional regulator
52	 63.79	0	59755..60903	-	382	148654240	-	RoseRS_0052	-	peptidase M23B
53	 62.35	0	61097..62230	-	377	148654241	-	RoseRS_0053	-	anti-sigma-factor antagonist
54	 57.61	0	62514..62789	+	91	148654242	-	RoseRS_0054	-	hypothetical protein
55	 60.02	0	62752..64767	-	671	148654243	-	RoseRS_0055	-	UvrD/REP helicase
56	 58.92	0	64812..66632	-	606	148654244	-	RoseRS_0056	-	AAA ATPase
57	 58.81	0	67267..67584	-	105	148654245	-	RoseRS_0057	-	hypothetical protein
58	 56.33	0	67831..68478	+	215	148654246	-	RoseRS_0058	-	ECF subfamily RNA polymerase sigma-24 factor
59	 63.70	0	68475..69080	+	201	148654247	-	RoseRS_0059	-	helix-turn-helix domain-containing protein
60	 61.86	0	69077..72610	+	1177	148654248	-	RoseRS_0060	-	UvrD/REP helicase
61	 62.80	0	72627..73091	-	154	148654249	-	RoseRS_0061	-	hypothetical protein
62	 60.83	0	73133..74143	-	336	148654250	-	RoseRS_0062	-	beta-lactamase domain-containing protein
63	 64.18	0	74133..77705	-	1190	148654251	-	RoseRS_0063	-	transcriptional regulator
64	 60.40	0	78141..81905	+	1254	148654252	-	RoseRS_0064	-	methionine synthase
65	 63.93	0	81916..83046	+	376	148654253	-	RoseRS_0065	-	secreted hydrolase-like protein
66	 57.36	0	83335..83721	+	128	148654254	-	RoseRS_0066	-	thioesterase superfamily protein
67	 72.03	+2	84282..85475	+	397	148654255	-	RoseRS_0068	-	transposase, IS4 family protein
68	 61.47	0	86495..86917	-	140	148654256	-	RoseRS_0070	-	hypothetical protein
69	 54.55	-1	86918..87148	-	76	148654257	-	RoseRS_0071	-	hypothetical protein
70	 66.67	+1	87519..88481	+	320	148654258	-	RoseRS_0072	-	transposase, IS111A/IS1328/IS1533
71	 56.64	0	88533..88871	-	112	148654259	-	RoseRS_0073	-	hypothetical protein
72	 58.53	0	88876..89379	-	167	148654260	-	RoseRS_0074	-	DNA polymerase beta subunit
73	 57.55	0	89494..89910	-	138	148654261	-	RoseRS_0075	-	histidine triad (HIT) protein
74	 63.63	0	89941..91683	-	580	148654262	-	RoseRS_0076	-	phosphotransferase domain-containing protein
75	 55.91	-1	92146..92619	+	157	148654263	-	RoseRS_0077	-	transcription elongation factor GreA
76	 58.50	0	92787..94256	+	489	148654264	-	RoseRS_0078	-	lysyl-tRNA synthetase
77	 56.96	0	94303..94539	+	78	148654265	-	RoseRS_0079	-	hypothetical protein
78	 59.11	0	94747..95130	+	127	148654266	-	RoseRS_0080	-	death-on-curing family protein
79	 63.37	0	95156..96094	+	312	148654267	-	RoseRS_0081	-	NAD-dependent epimerase/dehydratase
80	 62.19	0	96325..97620	+	431	148654268	-	RoseRS_0082	-	phospholipid/glycerol acyltransferase
81	 56.85	0	98048..98383	+	111	148654269	-	RoseRS_0083	-	hypothetical protein
82	 52.78	-1	98370..98693	+	107	148654270	-	RoseRS_0084	-	HEPN domain-containing protein
83	 54.87	-1	99040..99429	+	129	148654271	-	RoseRS_0085	-	HEPN domain-containing protein
84	 58.42	0	99434..99736	+	100	148654272	-	RoseRS_0086	-	DNA polymerase beta subunit
85	 67.26	+1	99758..100096	-	112	148654273	-	RoseRS_0087	-	hypothetical protein
86	 63.10	0	100102..101448	-	448	148654274	-	RoseRS_0088	-	hypothetical protein
87	 59.54	0	101445..102497	-	350	148654275	-	RoseRS_0089	-	hypothetical protein
88	 58.37	0	103222..103860	-	212	148654276	-	RoseRS_0090	-	ECF subfamily RNA polymerase sigma-24 factor
89	 59.97	0	104234..108073	-	1279	148654277	-	RoseRS_0091	-	DNA polymerase III, alpha subunit
90	 61.01	0	108462..109415	+	317	148654278	-	RoseRS_0092	-	anti-sigma-factor antagonist
91	 60.88	0	109432..111246	-	604	148654279	-	RoseRS_0093	-	extracellular solute-binding protein
92	 61.99	0	111358..112704	+	448	148654280	-	RoseRS_0094	-	peptidase M20
93	 63.95	0	112701..114245	+	514	148654281	-	RoseRS_0095	-	hypothetical protein
94	 65.55	+1	114369..115622	-	417	148654282	-	RoseRS_0096	-	molybdenum cofactor synthesis domain-containing protein
95	 59.71	0	115644..116606	-	320	148654283	-	RoseRS_0097	-	thioredoxin reductase
96	 64.63	+1	116761..118578	+	605	148654284	-	RoseRS_0098	-	hypothetical protein
97	 61.73	0	118560..119633	+	357	148654285	-	RoseRS_0099	-	ROK family protein
98	 59.45	0	119781..121622	+	613	148654286	-	RoseRS_0100	-	GTP-binding protein TypA
99	 49.05	-2	121916..122973	-	352	148654287	-	RoseRS_0101	-	transposase, IS4 family protein
100	 60.30	0	123422..123688	-	88	148654288	-	RoseRS_0103	-	acyl-CoA-binding protein
60.36	MEAN

4.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.