IslandPath Analysis: Nitrosomonas europaea ATCC 19718



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.82   STD DEV: 4.40
Nitrosomonas europaea ATCC 19718, complete genome - 1..2812094
2461 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.84	0	211..1590	+	459	30248032	dnaA	NE0001	-	dnaA; chromosomal replication initiator protein
2	 48.66	0	1791..2912	+	373	30248033	dnaN	NE0002	-	DNA polymerase III, beta chain
3	 49.71	0	2961..5390	+	809	30248034	gyrB	NE0003	-	DNA gyrase subunit B
4	 52.93	0	5413..5856	+	147	30248035	-	NE0004	-	hypothetical protein
5	 50.27	0	5907..6638	+	243	30248036	-	NE0005	-	16S pseudouridylate synthase
6	 44.44	-1	7350..7673	+	107	30248037	fdxA	NE0006	-	7Fe ferredoxin
7	 50.28	0	7717..8076	+	119	30248038	-	NE0007	-	hypothetical protein
8	 53.13	0	8100..11564	-	1154	30248039	mfd	NE0008	-	mfd: transcription-repair coupling factor
9	 53.61	0	11591..12892	-	433	30248040	-	NE0009	-	MgtC family membrane protein
10	 53.80	0	12864..14627	-	587	30248041	recJ	NE0010	-	recJ: single-stranded-DNA-specific exonuclease
11	 50.92	0	14771..15367	-	198	30248042	cyp	NE0011	-	cytochrome P460 precursor
12	 53.53	0	15451..16371	-	306	30248043	trpC	NE0012	-	indole-3-glycerol phosphate synthase
13	 57.41	+1	16373..17398	-	341	30248044	trpD	NE0013	-	anthranilate phosphoribosyltransferase
14	 50.17	0	17395..17994	-	199	30248045	trpG	NE0014	-	anthranilate synthase component II
15	 49.40	0	18115..19614	+	499	30248046	yfhK	NE0015	-	sensory transduction histidine kinase
16	 43.09	-1	19611..20153	+	180	30248047	-	NE0016	-	hypothetical protein
17	 51.68	0	20166..21533	+	455	30248048	yfhA	NE0017	-	putative transcriptional regulator of two-component regulator protein
18	 52.24	0	21543..22748	-	401	30248049	-	NE0018	-	PDZ domain-containing protein
19	 55.50	+1	22874..26788	-	1304	30248050	purL	NE0019	-	phosphoribosylformylglycinamidine synthase
20	 57.91	+1	26860..28377	+	505	30248051	-	NE0020	-	sugar kinase
21	 51.05	0	28652..29176	+	174	30248052	-	NE0021	-	hypothetical protein
22	 55.53	+1	29244..30401	-	385	30248053	-	NE0022	-	alanine dehydrogenase
23	 49.02	0	30420..31184	-	254	30248054	xthA1	NE0023	-	exodeoxyribonuclease III:exodeoxyribonuclease III xth
24	 45.53	-1	31294..31662	+	122	30248055	-	NE0024	-	cytochrome c, class I
25	 51.74	0	31721..33127	-	468	30248056	-	NE0025	-	metallo-beta-lactamase superfamily protein
26	 52.10	0	33134..34444	-	436	30248057	bioA	NE0026	-	aminotransferase class-III pyridoxal-phosphate
27	 49.48	0	34605..34895	+	96	30248058	groES	NE0027	-	co-chaperonin GroES
28	 51.40	0	34935..36578	+	547	30248059	groEL	NE0028	-	chaperonin GroEL
29	 51.30	0	36729..37457	+	242	30248060	-	NE0029	-	short-chain dehydrogenase/reductase
30	 46.52	0	37794..39113	+	439	30248061	tig	NE0030	-	trigger factor
31	 47.29	0	39097..39741	+	214	30248062	clpP	NE0031	-	Clp protease
32	 45.67	-1	39802..41082	+	426	30248063	clpX	NE0032	-	ATP-dependent protease ATP-binding subunit
33	 46.12	-1	41193..43616	+	807	30248064	lon	NE0033	-	lon; ATP-dependent protease La protein
34	 49.26	0	43971..45188	+	405	30248065	-	NE0034	-	aminotransferase class-V
35	 49.59	0	45481..47934	+	817	30248066	-	NE0035	-	putative ATP-dependent protease LA, putative
36	 49.51	0	48009..49331	-	440	30248067	-	NE0036	-	Outer membrane efflux protein
37	 50.08	0	49394..50050	-	218	30248068	pcm	NE0037	-	pcm; protein-L-isoaspartate o-methyltransferase
38	 50.87	0	50259..52157	+	632	30248069	thiC	NE0038	-	thiamine biosynthesis protein ThiC
39	 48.18	0	52205..53026	+	273	30248070	bacA	NE0039	-	bacitracin resistance protein BacA
40	 51.88	0	53027..53479	-	150	30248071	-	NE0040	-	rhodanese/cdc25 fold
41	 45.33	-1	53561..54052	-	163	30248072	ppiB	NE0041	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
42	 47.98	0	54071..54712	-	213	30248073	ppiA	NE0042	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
43	 50.14	0	54841..56238	+	465	30248074	cysS	NE0043	-	cysteinyl-tRNA synthetase
44	 51.60	0	56251..57033	-	260	30248075	-	NE0044	-	hypothetical protein
45	 49.24	0	57039..57962	-	307	30248076	motB	NE0045	-	flagellar motor protein MotB
46	 50.06	0	58002..58862	-	286	30248077	motA	NE0046	-	flagellar motor protein MotA
47	 60.14	+2	59059..59640	+	193	30248078	-	NE0047	-	cytidine and deoxycytidylate deaminase zinc-binding region
48	 53.87	0	59943..60731	+	262	30248079	-	NE0048	-	hypothetical protein
49	 51.87	0	60731..64420	+	1229	30248080	-	NE0049	-	sensory transduction histidine kinase
50	 52.18	0	64417..65610	+	397	30248081	sucC	NE0050	-	ATP-citrate lyase/succinyl-CoA ligase:ATP-grasp domain
51	 51.03	0	65613..66488	+	291	30248082	sucD	NE0051	-	succinyl-CoA synthetase subunit alpha
52	 52.59	0	66507..66854	+	115	30248083	-	NE0052	-	hypothetical protein
53	 47.55	0	66873..68300	+	475	30248084	-	NE0053	-	D-alanyl-D-alanine carboxypeptidase
54	 45.77	-1	74631..76334	+	567	30248085	-	NE0054	-	ABC transporter transmembrane region:ABC transporter
55	 41.94	-2	76453..76998	+	181	30248086	ispZ	NE0055	-	intracellular septation protein A
56	 50.35	0	77027..78160	+	377	30248087	mutY	NE0056	-	HhH-GPD
57	 51.99	0	78153..78779	+	208	30248088	-	NE0057	-	5-formyltetrahydrofolate cyclo-ligase
58	 50.79	0	78837..79472	-	211	30248089	-	NE0058	-	aromatic acid decarboxylase
59	 50.31	0	79491..80462	-	323	30248090	-	NE0059	-	HPr kinase/phosphorylase
60	 50.11	0	80449..80919	-	156	30248091	ptsN	NE0060	-	phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
61	 38.69	-2	81151..81486	-	111	30248092	-	NE0061	-	sigma 54 modulation protein / S30EA ribosomal protein
62	 49.45	0	81662..83125	-	487	30248093	rpoN1	NE0062	-	RNA polymerase sigma-54 factor family protein
63	 51.04	0	83132..83854	-	240	30248094	-	NE0063	-	ABC transporter ATPase
64	 46.60	0	83889..84506	-	205	30248095	-	NE0064	-	putative signal peptide protein
65	 47.59	0	84563..85144	-	193	30248096	-	NE0065	-	hypothetical protein
66	 52.04	0	85429..86529	+	366	30248097	nadA	NE0066	-	quinolinate synthetase
67	 50.30	0	86529..87353	+	274	30248098	-	NE0067	-	hypothetical protein
68	 53.28	0	87350..88507	+	385	30248099	-	NE0068	-	phospholipase D/transphosphatidylase
69	 53.80	0	88660..90042	+	460	30248100	pcnB	NE0069	-	poly A polymerase family protein
70	 53.22	0	90039..90551	+	170	30248101	-	NE0070	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
71	 50.39	0	90548..91192	+	214	30248102	-	NE0071	-	deoxynucleoside kinase
72	 53.21	0	91193..92002	+	269	30248103	panB	NE0072	-	ketopantoate hydroxymethyltransferase
73	 52.76	0	92026..92859	+	277	30248104	panC	NE0073	-	pantoate-beta-alanine ligase
74	 51.68	0	92896..95451	-	851	30248105	-	NE0074	-	putative alpha-glucan phosphorylase, putative
75	 48.35	0	95489..96034	-	181	30248106	-	NE0075	-	oligoribonuclease
76	 49.81	0	96161..97465	+	434	30248107	-	NE0076	-	M48 family peptidase
77	 46.20	-1	97462..97803	+	113	30248108	phhB	NE0077	-	pterin-4-alpha-carbinolamine dehydratase
78	 51.43	0	97800..98744	+	314	30248109	-	NE0078	-	putative ATP-binding protein
79	 51.30	0	98819..99280	-	153	30248110	fkpA	NE0079	-	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)
80	 46.84	0	99423..101147	-	574	30248111	-	NE0080	-	diguanylate cyclase/phosphodiesterase
81	 50.21	0	101247..101969	-	240	30248112	-	NE0081	-	transmembrane protein
82	 52.06	0	102223..102756	+	177	30248113	-	NE0082	-	hypothetical protein
83	 55.31	+1	102770..103315	+	181	30248114	-	NE0083	-	hypothetical protein
84	 46.84	0	103482..103718	+	78	30248115	-	NE0084	-	thioredoxin
85	 51.19	0	103819..105078	-	419	30248116	-	NE0085	-	SAM-binding motif-containing protein
86	 49.31	0	105092..105817	-	241	30248117	-	NE0086	-	hypothetical protein
87	 53.24	0	105814..106446	-	210	30248118	purN	NE0087	-	phosphoribosylglycinamide formyltransferase
88	 51.94	0	106458..107516	-	352	30248119	purM	NE0088	-	phosphoribosylaminoimidazole synthetase
89	 49.86	0	107576..108634	+	352	30248120	-	NE0089	-	hypothetical protein
90	 52.27	0	108767..112162	-	1131	30248121	-	NE0090	-	guanylate cyclase
91	 55.11	0	112455..114539	-	694	30248122	-	NE0091	-	universal stress protein
92	 55.56	+1	114744..115454	-	236	30248123	-	NE0092	-	hypothetical protein
93	 57.64	+1	115940..120313	-	1457	30248124	-	NE0093	-	recQ; ATP-dependent DNA helicase
94	 53.01	0	121762..123321	-	519	30248125	guaA	NE0094	-	bifunctional GMP synthase/glutamine amidotransferase protein
95	 52.19	0	123333..124796	-	487	30248126	guaB	NE0095	-	guaB; inosine-5'-monophosphate dehydrogenase oxidoreductase protein
96	 48.76	0	124910..125272	-	120	30248127	-	NE0096	-	hypothetical protein
97	 47.60	0	125318..125983	-	221	30248128	-	NE0097	-	HAD family hydrolase
98	 47.06	0	126117..126779	-	220	30248129	-	NE0098	-	hypothetical protein
99	 40.20	-2	126918..128096	-	392	30248130	-	NE0099	-	hypothetical protein
100	 54.27	0	128125..129399	-	424	30248131	-	NE0100	-	general substrate transporters
50.82	MEAN

4.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.