IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.36	-2	630..905	+	91	17936712	-	Atu3000	-	hypothetical protein
2	 45.66	-2	943..1656	-	237	15891922	-	Atu3001	-	hypothetical protein
3	 52.24	-2	2585..2986	+	133	159185563	-	Atu3005	-	hypothetical protein
4	 43.13	-2	3393..4811	-	472	15891919	-	Atu3006	-	hypothetical protein
5	 47.45	-2	4831..5085	-	84	15891918	-	Atu3007	-	hypothetical protein
6	 43.59	-2	5178..5372	+	64	17936719	-	Atu3008	-	hypothetical protein
7	 42.13	-2	5510..6577	+	355	15891917	exoZ	Atu3009	-	exopolysaccharide production protein
8	 60.93	0	6604..7527	-	307	159185564	-	Atu3010	-	hypothetical protein
9	 63.87	+1	7524..7880	-	118	15891915	-	Atu3011	-	ArsR family transcriptional regulator
10	 54.49	-1	8093..8782	-	229	159185565	-	Atu3012	-	hypothetical protein
11	 51.36	-2	8940..9344	-	134	15891913	-	Atu3013	-	hypothetical protein
12	 54.92	-1	9341..9604	-	87	15891912	-	Atu3014	-	hypothetical protein
13	 59.60	0	9998..10549	+	183	15891911	-	Atu3015	-	hypothetical protein
14	 59.33	0	10589..10888	+	99	159185566	gpmB	Atu3016	-	phosphoglyceromutase
15	 53.74	-1	10885..11178	+	97	15891909	-	Atu3017	-	phosphoglyceromutase
16	 55.21	-1	11249..11632	+	127	159185567	-	Atu3018	-	hypothetical protein
17	 56.80	0	11703..12239	-	178	159185568	-	Atu3019	-	hypothetical protein
18	 56.40	0	12671..13381	+	236	159185569	-	Atu3020	-	GntR family transcriptional regulator
19	 60.04	0	13412..14527	+	371	15891905	-	Atu3021	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
20	 56.56	0	14524..15453	+	309	15891904	-	Atu3022	-	ABC transporter, membrane spanning protein (sugar)
21	 56.92	0	15465..16346	+	293	15891903	-	Atu3023	-	ABC transporter, membrane spanning protein (sugar)
22	 57.06	0	16407..17936	+	509	159185570	-	Atu3024	-	ABC transporter, membrane spanning protein (sugar)
23	 58.82	0	18008..20338	+	776	15891901	-	Atu3025	-	oligo alginate lyase
24	 62.40	0	20354..21103	+	249	15891900	-	Atu3026	-	short chain dehydrogenase
25	 61.28	0	21120..22289	+	389	159186368	-	Atu8093	-	hypothetical protein
26	 60.64	0	22325..23320	+	331	159185571	-	Atu3027	-	dehydrogenase
27	 56.52	0	23317..24114	+	265	15891897	-	Atu3028	-	hypothetical protein
28	 56.25	0	24114..25361	+	415	159185572	gudD	Atu3029	-	glucarate dehydratase
29	 60.21	0	25394..25780	-	128	15891895	-	Atu3030	-	hypothetical protein
30	 58.90	0	25864..26082	+	72	15891894	-	Atu3031	-	hypothetical protein
31	 56.79	0	26127..26531	+	134	15891893	-	Atu3032	-	hypothetical protein
32	 62.92	+1	26596..26835	+	79	159185573	-	Atu3033	-	hypothetical protein
33	 65.39	+1	26854..27402	+	182	159185574	-	Atu3034	-	ROK family transcriptional regulator
34	 60.16	0	27551..29794	-	747	159185575	-	Atu3035	-	two component response regulator
35	 62.39	0	30038..31066	+	342	159185576	-	Atu3036	-	ABC transporter, membrane spanning protein (dipeptide)
36	 60.09	0	31066..31947	+	293	15891888	-	Atu3037	-	ABC transporter, membrane spanning protein (dipeptide)
37	 60.23	0	31952..33598	+	548	15891887	-	Atu3038	-	ABC transporter, nucleotide binding/ATPase protein (dipeptide)
38	 62.17	0	33615..35171	+	518	15891886	-	Atu3039	-	hydantoinase beta subunit-like protein
39	 63.58	+1	35164..36297	+	377	159185577	-	Atu3040	-	hypothetical protein
40	 57.43	0	36341..37954	+	537	15891884	-	Atu3041	-	ABC transporter, substrate binding protein (dipeptide)
41	 63.60	+1	38070..39146	+	358	15891883	-	Atu3042	-	hypothetical protein
42	 61.99	0	39143..40681	+	512	15891882	-	Atu3043	-	hydantoinase beta subunit-like protein
43	 64.02	+1	40726..41670	+	314	159185578	asg	Atu3044	-	asparaginase
44	 57.76	0	41736..42083	-	115	15891880	-	Atu3045	-	hypothetical protein
45	 58.97	0	42150..43475	-	441	159185579	-	Atu3046	-	oxidoreductase
46	 56.12	-1	43487..44377	-	296	159185580	-	Atu3047	-	ABC transporter, membrane spanning protein (oligopeptide)
47	 57.62	0	44419..45369	-	316	15891877	-	Atu3048	-	ABC transporter, membrane spanning protein (oligopeptide)
48	 55.90	-1	45499..47160	-	553	159185581	-	Atu3049	-	ABC transporter, substrate binding protein (oligopeptide)
49	 59.83	0	47297..48628	-	443	159185582	-	Atu3050	-	putative AgaE
50	 60.48	0	48630..49340	-	236	15891874	-	Atu3051	-	agropine synthesis reductase
51	 55.97	-1	49337..49822	-	161	159185583	-	Atu3052	-	MarR family transcriptional regulator
52	 56.28	0	50111..51757	-	548	159185584	-	Atu3053	-	ABC transporter, nucleotide binding/ATPase protein (peptide)
53	 59.15	0	52166..53335	+	389	159185585	-	Atu3054	-	hypothetical protein
54	 58.06	0	53535..54800	-	421	159185586	-	Atu3055	-	hypothetical protein
55	 56.59	0	54845..56809	-	654	15891869	crdS	Atu3056	-	beta 1,3 glucan synthase catalytic subunit
56	 56.93	0	56941..58398	-	485	159185587	-	Atu3057	-	hypothetical protein
57	 57.32	0	58822..60405	+	527	159185588	-	Atu3059	-	Na+/H+ antiporter
58	 58.93	0	60688..62652	-	654	15891866	-	Atu3060	-	ABC transporter, nucleotide binding/ATPase protein
59	 57.74	0	62905..64674	+	589	15891865	-	Atu3061	-	GGDEF family protein
60	 60.74	0	64913..65941	+	342	159185589	-	Atu3062	-	LacI family transcription regulator
61	 58.07	0	65974..66927	+	317	15891863	-	Atu3063	-	ABC transporter, nucleotide binding/ATPase protein
62	 60.20	0	66924..67727	+	267	15891862	-	Atu3064	-	ABC transporter, nucleotide binding/ATPase protein
63	 61.19	0	67724..68728	+	334	15891861	-	Atu3065	-	ABC transporter, membrane spanning protein (sugar)
64	 59.27	0	68733..69800	+	355	15891860	-	Atu3066	-	resiniferatoxin-binding, phosphotriesterase-related protein
65	 60.31	0	69825..70595	+	256	15891859	-	Atu3067	-	hypothetical protein
66	 62.32	0	70605..71501	-	298	15891858	-	Atu3068	-	ribokinase
67	 61.68	0	71526..72368	+	280	15891857	-	Atu3069	-	hypothetical protein
68	 58.70	0	72383..73624	+	413	159185590	amaB	Atu3070	-	allantoate amidohydrolase
69	 57.41	0	73728..74213	+	161	159185591	-	Atu3071	-	hypothetical protein
70	 61.61	0	74687..78721	-	1344	15891854	-	Atu3072	-	peptide synthetase
71	 57.86	0	78886..79578	-	230	159185592	-	Atu3073	-	aspartate racemase
72	 60.85	0	79784..80557	-	257	15891852	-	Atu3074	-	short chain dehydrogenase
73	 60.93	0	80645..81289	+	214	159185593	-	Atu3075	-	TetR family transcriptional regulator
74	 62.21	0	81388..82710	-	440	159185594	uraA	Atu3076	-	uracil transport protein
75	 56.22	0	82966..84123	-	385	159185595	ampC	Atu3077	-	beta-lactamase
76	 63.37	+1	84258..85136	+	292	15891848	ampR	Atu3078	-	LysR family transcriptional regulator
77	 64.86	+1	85146..86363	-	405	159185596	chrA	Atu3079	-	chromate transport protein
78	 65.44	+1	86466..87689	-	407	15891846	-	Atu3080	-	hypothetical protein
79	 60.78	0	87692..89185	-	497	15891845	-	Atu3081	-	hypothetical protein
80	 64.44	+1	89262..89711	-	149	15891844	-	Atu8183	-	hypothetical protein
81	 63.49	+1	89708..90148	-	146	15891843	-	Atu3083	-	hypothetical protein
82	 60.41	0	90145..90687	-	180	159185597	sigW	Atu3084	-	RNA polymerase sigma factor
83	 62.77	0	90839..91582	-	247	15891841	-	Atu3085	-	hydantoin racemase
84	 59.22	0	91594..92412	-	272	15891840	-	Atu3086	-	ABC transporter, membrane spanning protein (spermidine/putrescine)
85	 57.79	0	92416..93327	-	303	159185598	-	Atu3087	-	ABC transporter, membrane spanning protein (spermidine/putrescine)
86	 58.84	0	93565..94854	-	429	15891838	-	Atu3088	-	ABC transporter, substrate binding protein (spermidine/putrescine)
87	 62.25	0	94885..95970	-	361	159185599	-	Atu3089	-	ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine)
88	 59.02	0	96196..97176	-	326	15891836	-	Atu3090	-	DNA polymerase III subunit epsilon
89	 58.58	0	97368..98270	+	300	159185600	-	Atu3091	-	hypothetical protein
90	 59.26	0	98307..98792	-	161	159185601	-	Atu3092	-	hypothetical protein
91	 62.53	0	98889..99782	-	297	159185602	-	Atu3093	-	transglycosylase
92	 60.22	0	100201..101985	-	594	15891832	mcpA	Atu3094	-	methyl-accepting chemotaxis protein
93	 59.70	0	102222..102695	+	157	159185603	-	Atu3095	-	hypothetical protein
94	 56.77	0	102956..104299	+	447	15891830	ugpB	Atu3096	-	ABC transporter, substrate binding protein (sn-glycerol 3-phosphate)
95	 59.71	0	104382..105272	+	296	15891829	ugpA	Atu3097	-	sn-glycerol-3-phosphate ABC transporter membrane protein
96	 62.15	0	105280..106164	+	294	15891828	ugpE	Atu3098	-	sn-glycerol-3-phosphate ABC transporter membrane protein
97	 62.57	0	106196..107317	+	373	159185604	ugpC	Atu3099	-	glycerol-3-phosphate transporter ATP-binding subunit
98	 54.83	-1	107390..108217	-	275	15891826	-	Atu3100	-	ABC transporter, membrane spanning protein (sugar)
99	 55.63	-1	108214..109092	-	292	159185605	-	Atu3101	-	ABC transporter, membrane spanning protein (sugar)
100	 59.22	0	109168..110442	-	424	15891824	-	Atu3102	-	ABC transporter, substrate binding protein (sugar)
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.