IslandPath Analysis: Brucella melitensis biovar Abortus 2308



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.25   STD DEV: 4.06
Brucella melitensis biovar Abortus 2308 chromosome I, complete sequence - 1..2121359
2000 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.23	0	784..2274	+	496	82698933	dnaA	BAB1_0001	-	chromosomal replication initiation protein
2	 58.71	0	2503..3696	+	397	82698934	dnaN	BAB1_0002	-	DNA polymerase III subunit beta
3	 61.39	+1	3878..5032	+	384	82698935	recF	BAB1_0003	-	recombination protein F
4	 61.43	+1	5070..5852	+	260	82698936	-	BAB1_0004	-	molybdopterin biosynthesis protein MoeB
5	 57.37	0	5869..6825	-	318	82698937	-	BAB1_0005	-	pyridine nucleotide-disulphide oxidoreductase
6	 59.04	0	6822..8447	-	541	82698938	-	BAB1_0006	-	ABC transporter ATPase
7	 57.89	0	8471..9610	-	379	82698939	-	BAB1_0007	-	binding-protein dependent transport system inner membrane protein
8	 55.83	0	9610..10707	-	365	82698940	-	BAB1_0008	-	binding-protein dependent transport system inner membrane protein
9	 57.41	0	10819..12633	-	604	82698941	-	BAB1_0009	-	solute-binding family 5 protein
10	 56.07	0	12680..14548	-	622	82698942	-	BAB1_0010	-	solute-binding family 5 protein
11	 53.40	0	14779..15102	-	107	82698943	-	BAB1_0011	-	hypothetical protein
12	 48.26	-2	15148..15348	-	66	82698944	-	BAB1_0012	-	hypothetical protein
13	 35.61	-2	15388..15738	-	116	82698945	-	BAB1_0013	-	hypothetical protein
14	 52.74	-1	17380..17580	+	66	82698946	-	BAB1_0015	-	hypothetical protein
15	 61.51	+1	17577..18371	-	264	82698947	-	BAB1_0016	-	enoyl-CoA hydratase
16	 59.38	0	18368..19231	-	287	82698948	-	BAB1_0017	-	hydroxymethylglutaryl-CoA lyase
17	 62.07	+1	19224..21245	-	673	82698949	-	BAB1_0018	-	carbamoyl-phosphate synthase subunit L
18	 62.00	+1	21257..22864	-	535	82698950	-	BAB1_0019	-	carboxyl transferase
19	 55.99	0	24879..25262	-	127	82698951	-	BAB1_0022	-	hypothetical protein
20	 61.20	0	25647..26999	+	450	82698952	aroA	BAB1_0023	-	3-phosphoshikimate 1-carboxyvinyltransferase
21	 62.73	+1	26996..27655	+	219	82698953	cmk	BAB1_0024	-	cytidylate kinase
22	 57.91	0	27871..29571	+	566	82698954	rpsA	BAB1_0025	-	30S ribosomal protein S1
23	 59.74	0	29989..30999	-	336	82698955	-	BAB1_0026	-	hypothetical protein
24	 57.33	0	31115..32014	+	299	82698956	-	BAB1_0027	-	transcriptional regulator LysR
25	 55.22	0	32619..33902	-	427	82698957	-	BAB1_0028	-	transglycosylase, putative
26	 60.73	0	33918..34523	-	201	82698958	recR	BAB1_0029	-	recombination protein RecR
27	 59.88	0	34654..34977	-	107	82698959	-	BAB1_0030	-	hypothetical protein
28	 61.91	+1	35002..36810	-	602	82698960	-	BAB1_0031	-	DNA polymerase III subunits gamma and tau
29	 61.48	+1	37092..37496	+	134	82698961	-	BAB1_0032	-	hit1 protein
30	 60.02	0	37525..38472	+	315	82698962	-	BAB1_0033	-	NUDIX hydrolase
31	 58.80	0	38473..39336	-	287	82698963	pheA	BAB1_0034	-	prephenate dehydratase
32	 60.58	0	39425..40180	-	251	82698964	-	BAB1_0035	-	3-deoxy-manno-octulosonate cytidylyltransferase
33	 56.81	0	40558..41166	+	202	82698965	-	BAB1_0036	-	cytochrome c heme-binding site:cytochrome c, class IA/ IB:cytochrome c, class I:cytochrome c, class IC
34	 61.49	+1	41211..42176	-	321	82698966	-	BAB1_0037	-	molybdopterin biosynthesis enzyme
35	 55.75	0	42703..43728	+	341	82698967	-	BAB1_0038	-	copper center Cu(A):cytochrome o ubiquinol oxidase subunit II
36	 57.94	0	45790..46419	+	209	82698968	-	BAB1_0041	-	cytochrome c oxidase, subunit III
37	 55.46	0	46419..46784	+	121	82698969	qoxD	BAB1_0042	-	cytochrome C oxidase subunit IV
38	 50.18	-1	46781..47059	-	92	82698970	-	BAB1_0043	-	hypothetical protein
39	 59.17	0	48232..50151	+	639	82698971	-	BAB1_0045	-	surface antigen (D15)
40	 59.87	0	50340..54887	+	1515	82698972	-	BAB1_0046	-	hypothetical protein
41	 57.44	0	55032..55757	+	241	82698973	-	BAB1_0047	-	ErfK/YbiS/YcfS/YnhG:twin-arginine translocation pathway signal
42	 55.56	0	55808..56023	-	71	82698974	-	BAB1_0048	-	hypothetical protein
43	 59.72	0	56093..56596	-	167	82698975	-	BAB1_0049	-	hypothetical protein
44	 61.35	+1	56934..57140	-	68	82698976	-	BAB1_0050	-	hypothetical protein
45	 58.61	0	57151..58155	-	334	82698977	-	BAB1_0051	-	hypothetical protein
46	 59.65	0	58290..58688	-	132	82698978	-	BAB1_0052	-	hypothetical protein
47	 58.33	0	58909..59304	-	131	82698979	-	BAB1_0053	-	glyoxalase/bleomycin resistance protein/dioxygenase
48	 62.20	+1	59501..60664	+	387	82698980	-	BAB1_0054	-	TonB-dependent receptor protein
49	 57.84	0	60853..62484	-	543	82698981	pgm	BAB1_0055	-	phosphoglucomutase
50	 44.62	-2	62540..62725	-	61	82698982	-	BAB1_0056	-	hypothetical protein
51	 59.73	0	62700..63593	-	297	82698983	-	BAB1_0057	-	transcriptional regulator LysR
52	 54.65	0	63718..64641	+	307	82698984	-	BAB1_0058	-	esterase/lipase/thioesterase, active site
53	 58.94	0	64714..65412	+	232	82698985	frcK	BAB1_0059	-	putative fructose transport system kinase
54	 58.84	0	65512..66201	+	229	82698986	-	BAB1_0060	-	fumarylacetoacetate (FAA) hydrolase
55	 52.60	-1	66221..66412	+	63	82698987	-	BAB1_0061	-	hypothetical protein
56	 46.76	-2	66474..66689	+	71	82698988	-	BAB1_0062	-	hypothetical protein
57	 51.85	-1	66855..67043	+	62	82698989	-	BAB1_0063	-	hypothetical protein
58	 62.38	+1	67058..67921	+	287	82698990	-	BAB1_0064	-	SLT domain-containing protein
59	 57.84	0	68103..68759	+	218	82698991	-	BAB1_0065	-	Hly-III related proteins
60	 60.39	0	68900..72133	-	1077	82698992	dnaE2	BAB1_0066	-	error-prone DNA polymerase
61	 65.01	+1	72133..73584	-	483	82698993	-	BAB1_0067	-	hypothetical protein
62	 64.00	+1	73610..74473	-	287	82698994	-	BAB1_0068	-	hypothetical protein
63	 52.85	-1	74910..78911	+	1333	82698995	-	BAB1_0069	-	hypothetical protein
64	 53.92	0	79120..79668	+	182	82698996	-	BAB1_0070	-	hypothetical protein
65	 58.23	0	79747..80967	-	406	82698997	-	BAB1_0071	-	argininosuccinate synthase
66	 56.82	0	81154..81813	+	219	82698998	-	BAB1_0072	-	lysine exporter protein LysE/YggA
67	 57.94	0	81817..82320	-	167	82698999	-	BAB1_0073	-	hypothetical protein
68	 59.14	0	82354..83589	-	411	82699000	-	BAB1_0074	-	hypothetical protein
69	 57.54	0	83849..84352	-	167	82699001	-	BAB1_0075	-	hypothetical protein
70	 63.54	+1	84800..85183	-	127	82699002	-	BAB1_0076	-	hypothetical protein
71	 54.76	0	85271..85564	-	97	82699003	phhB	BAB1_0077	-	pterin-4-alpha-carbinolamine dehydratase
72	 61.25	0	86304..86894	-	196	82699004	-	BAB1_0080	-	2`-5` RNA ligase, putative
73	 56.06	0	87075..87800	-	241	82699005	-	BAB1_0081	-	GDSL family lipase
74	 61.87	+1	87947..88675	+	242	82699006	-	BAB1_0082	-	sugar ABC transporter ATPase
75	 61.73	+1	88672..91221	+	849	82699007	-	BAB1_0083	-	hypothetical protein
76	 57.86	0	91455..92192	+	245	82699008	-	BAB1_0084	-	hypothetical protein
77	 54.73	0	92865..93266	-	133	82699009	-	BAB1_0087	-	hypothetical protein
78	 57.14	0	93816..94550	-	244	82699010	-	BAB1_0088	-	hypothetical protein
79	 56.74	0	94703..94843	-	46	82699011	-	BAB1_0089	-	hypothetical protein
80	 60.27	0	94827..97514	-	895	82699012	-	BAB1_0090	-	aconitate hydratase
81	 58.33	0	97858..98505	+	215	82699013	ccmA	BAB1_0091	-	cytochrome c biogenesis protein CcmA
82	 62.31	+1	98505..99170	+	221	82699014	ccmB	BAB1_0092	-	SecY protein:cytochrome c-type biogenesis protein CcmB
83	 58.40	0	99228..100013	+	261	82699015	ccmC	BAB1_0093	-	cytochrome c assembly protein:cytochrome c-type biogenesis protein CcmC
84	 56.90	0	100010..100183	+	57	82699016	-	BAB1_0094	-	Heme exporter protein D (CcmD)
85	 59.31	0	100180..100791	+	203	82699017	-	BAB1_0095	-	thiol:disulfide oxidoreductase DsbE
86	 61.00	0	101040..102875	-	611	82699018	ilvD	BAB1_0096	-	dihydroxy-acid dehydratase
87	 54.35	0	103056..103193	+	45	82699019	-	BAB1_0097	-	hypothetical protein
88	 61.30	0	103274..103627	-	117	82699020	-	BAB1_0098	-	hypothetical protein
89	 59.52	0	103732..104109	-	125	82699021	-	BAB1_0099	-	response regulator receiver
90	 49.37	-1	104284..104520	-	78	82699022	-	BAB1_0100	-	transcriptional regulator, putative
91	 56.79	0	105173..105577	+	134	82699023	-	BAB1_0101	-	hypothetical protein
92	 57.02	0	105663..106367	-	234	82699024	-	BAB1_0102	-	formate/nitrite transporter
93	 53.97	0	106439..107257	+	272	82699025	-	BAB1_0103	-	hypothetical protein
94	 57.73	0	107535..108563	+	342	82699026	-	BAB1_0104	-	sulfate-/thiosulfate-binding protein
95	 59.40	0	108658..109524	+	288	82699027	-	BAB1_0105	-	binding-protein dependent transport system inner membrane protein
96	 59.05	0	109514..110380	+	288	82699028	cysW-1	BAB1_0106	-	binding-protein dependent transport system inner membrane protein
97	 61.39	+1	110478..111557	+	359	82699029	-	BAB1_0107	-	ABC transporter ATPase
98	 60.53	0	112348..120546	+	2732	82699030	-	BAB1_0108	-	cyclic beta 1-2 glucan synthetase
99	 58.39	0	120636..121940	+	434	82699031	pncB	BAB1_0109	-	nicotinate phosphoribosyltransferase
100	 60.77	0	121982..122812	-	276	82699032	-	BAB1_0110	-	phenazine biosynthesis PhzC/PhzF protein
57.25	MEAN

4.06	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.