IslandPath Analysis: Orientia tsutsugamushi str. Boryong



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.84   STD DEV: 3.12
Orientia tsutsugamushi Boryong, complete genome - 1..2127051
1182 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.69	0	22..1431	+	469	148283998	dnaA	OTBS_0001	-	chromosomal replication initiation protein
2	 28.41	0	1450..2748	+	432	148283999	dnaN	OTBS_0002	-	DNA polymerase III subunit beta
3	 28.78	0	2998..3678	+	226	148284000	virB8	OTBS_0003	-	type IV secretion system protein
4	 29.35	0	3698..4099	+	133	148284001	virB9	OTBS_0004	-	type IV secretion system protein
5	 31.31	0	4099..5628	+	509	148284002	virB10	OTBS_0005	-	type IV secretion system protein
6	 32.73	0	5628..6617	+	329	148284003	virB11	OTBS_0006	-	type IV secretion system protein
7	 30.74	0	6617..8389	+	590	148284004	virD4	OTBS_0007	-	type IV secretion system protein
8	 29.11	0	10369..12168	+	599	148284005	rhp2	OTBS_0009	-	hypothetical protein
9	 28.81	0	16150..16326	-	58	148284006	-	OTBS_0012	-	hypothetical protein
10	 33.96	+1	18683..19633	-	316	148284007	trxB1	OTBS_0016	-	thioredoxin reductase
11	 29.44	0	19769..20692	-	307	148284008	-	OTBS_0017	-	hypothetical protein
12	 29.52	0	20868..22229	-	453	148284009	tolB	OTBS_0018	-	protein precursor
13	 33.96	+1	22560..23987	-	475	148284010	lpdA	OTBS_0019	-	dihydrolipoamide dehydrogenase
14	 29.98	0	24079..24882	-	267	148284011	-	OTBS_0020	-	hypothetical protein
15	 36.47	+1	25057..25662	+	201	148284012	-	OTBS_0021	-	hypothetical protein
16	 31.68	0	28785..29750	+	321	148284013	tnD	OTBS_0025	-	transposase and inactivated derivative
17	 33.11	0	30179..31996	+	605	148284014	nrdA	OTBS_0026	-	ribonucleotide-diphosphate reductase subunit alpha
18	 32.73	0	32019..33008	+	329	148284015	nrdF	OTBS_0027	-	ribonucleotide-diphosphate reductase subunit beta
19	 37.50	+2	38069..38404	+	111	148284016	tchA	OTBS_0032	-	hypothetical protein
20	 31.09	0	38952..39353	+	133	148284017	tchB	OTBS_0034	-	hypothetical protein
21	 36.13	+1	39465..39929	+	154	148284018	traB	OTBS_0035	-	conjugative pilus assembly protein
22	 31.62	0	39929..40219	+	96	148284019	traV	OTBS_0036	-	conjugative transfer protein
23	 30.77	0	41506..42480	-	324	148284020	tnE	OTBS_0039	-	transposase and inactivated derivative
24	 30.20	0	42602..43207	-	201	148284021	spoT1	OTBS_0040	-	spoT-like ppGpp hydrolase
25	 27.13	-1	46763..48487	-	574	148284022	rhp2	OTBS_0047	-	hypothetical protein
26	 32.43	0	49164..50264	+	366	148284023	ybjR	OTBS_0048	-	N-acetylmuramoyl-L-alanine amidase
27	 31.71	0	51898..52512	+	204	148284024	ank2A1	OTBS_0051	-	ankyrin repeat-containing protein
28	 28.41	0	55786..56679	+	297	148284025	-	OTBS_0057	-	hypothetical protein
29	 37.80	+2	61808..62143	+	111	148284026	tchA	OTBS_0063	-	hypothetical protein
30	 31.09	0	62691..63092	+	133	148284027	tchB	OTBS_0065	-	hypothetical protein
31	 36.13	+1	63204..63668	+	154	148284028	traB	OTBS_0066	-	conjugative pilus assembly protein
32	 31.62	0	63668..63958	+	96	148284029	traV	OTBS_0067	-	conjugative transfer protein
33	 28.91	0	64853..65236	+	127	148284030	trbC	OTBS_0069	-	conjugative transfer protein
34	 31.45	0	67088..68359	+	423	148284031	ank1D1	OTBS_0071	-	ankyrin repeat-containing protein
35	 34.55	+1	72912..73979	-	355	148284032	tnE	OTBS_0080	-	transposase and inactivated derivative
36	 32.19	0	74292..75254	+	320	148284033	tnD	OTBS_0082	-	transposase and inactivated derivative
37	 38.48	+2	76112..78367	+	751	148284034	ank1u1	OTBS_0084	-	ankyrin repeat-containing protein
38	 36.34	+1	83456..83854	+	132	148284035	traD_Ti	OTBS_0087	-	conjugative transfer protein
39	 30.05	0	83942..84520	+	192	148284036	rhp4	OTBS_0088	-	hypothetical protein
40	 30.73	0	84598..85173	-	191	148284037	spoT2	OTBS_0089	-	spoT-like ppGpp hydrolase
41	 28.28	0	85307..86908	-	533	148284038	hkp3	OTBS_0090	-	putative signal transduction histidine kinase
42	 25.18	-1	87421..87972	-	183	148284039	rhp5	OTBS_0091	-	hypothetical protein
43	 31.35	0	89265..89768	-	167	148284040	rhp6	OTBS_0093	-	putative ompA-like autotransporter
44	 29.85	0	91751..93301	-	516	148284041	tchD	OTBS_0096	-	hypothetical protein
45	 32.43	0	95039..95590	+	183	148284042	ank1C1	OTBS_0098	-	ankyrin repeat-containing protein
46	 35.27	+1	99505..103890	-	1461	148284043	rhp8	OTBS_0102	-	ompA-like, putative autotransporter
47	 22.81	-2	106687..106971	-	94	148284044	tpr1B1	OTBS_0106	-	TPR repeat-containing protein
48	 35.11	+1	107369..107875	+	168	148284045	traN	OTBS_0108	-	conjugative transfer protein
49	 27.60	-1	111862..112524	+	220	148284046	tpr1B2	OTBS_0112	-	TPR repeat-containing protein
50	 33.39	0	112521..114278	+	585	148284047	traD_F	OTBS_0113	-	conjugative transfer protein
51	 34.62	+1	114517..115368	-	283	148284048	dapD	OTBS_0115	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
52	 27.13	-1	115467..116111	+	214	148284049	-	OTBS_0116	-	hypothetical protein
53	 28.89	0	117750..117974	+	74	148284050	-	OTBS_0118	-	hypothetical protein
54	 33.84	0	118052..118648	-	198	148284051	tnD	OTBS_0119	-	transposase and inactivated derivative
55	 27.59	-1	118669..118842	-	57	148284052	-	OTBS_0120	-	hypothetical protein
56	 30.77	0	119171..119287	-	38	148284053	tpr1A2	OTBS_0121	-	TPR repeat-containing protein
57	 32.37	0	120181..121431	-	416	148284054	-	OTBS_0123	-	hypothetical protein
58	 29.82	0	122333..122929	-	198	148284055	dam2	OTBS_0126	-	site-specific DNA adenine methylase
59	 28.23	0	123239..124120	+	293	148284056	hkp5	OTBS_0128	-	putative signal transduction histidine kinase
60	 32.94	0	130479..131486	+	335	148284057	-	OTBS_0135	-	hypothetical protein
61	 37.65	+2	132097..132699	+	200	148284058	-	OTBS_0137	-	hypothetical protein
62	 27.30	-1	132728..134185	-	485	148284059	-	OTBS_0138	-	hypothetical protein
63	 22.42	-2	134193..134357	+	54	148284060	-	OTBS_0139	-	hypothetical protein
64	 28.80	0	134361..135110	+	249	148284061	tpiA	OTBS_0140	-	triosephosphate isomerase
65	 28.91	0	135116..135409	+	97	148284062	secG	OTBS_0141	-	preprotein translocase subunit SecG
66	 30.23	0	135907..137487	-	526	148284063	lysK	OTBS_0142	-	lysyl-tRNA synthetase
67	 27.69	-1	137639..138187	+	182	148284064	dsbB	OTBS_0143	-	disulfide bond formation protein
68	 31.32	0	138150..138695	+	181	148284065	coq7	OTBS_0144	-	ubiquinone biosynthesis protein
69	 33.04	0	138771..139463	+	230	148284066	psd	OTBS_0145	-	phosphatidylserine decarboxylase
70	 29.21	0	139512..140288	+	258	148284067	pssA	OTBS_0146	-	CDP-diacylglycerol--serineO-phosphatidyltransferase
71	 29.84	0	140335..140820	+	161	148284068	mnhE	OTBS_0147	-	multisubunit Na+/H+ antiporter, MnhE subunit
72	 27.11	-1	141101..143929	+	942	148284069	-	OTBS_0148	-	hypothetical protein
73	 26.48	-1	144106..145782	-	558	148284070	-	OTBS_0149	-	hypothetical protein
74	 36.06	+1	145851..146729	-	292	148284071	sucD	OTBS_0150	-	succinyl-CoA synthetase, alpha chain
75	 32.56	0	146744..147904	-	386	148284072	sucC	OTBS_0151	-	succinyl-CoA synthetase beta chain
76	 29.21	0	147961..149124	-	387	148284073	ubiH	OTBS_0152	-	2-polyprenyl-6-methoxyphenol 4-hydroxylase
77	 31.97	0	149534..150118	-	194	148284074	-	OTBS_0153	-	hypothetical protein
78	 31.65	0	150260..153463	-	1067	148284075	ileS	OTBS_0154	-	isoleucyl-tRNA synthetase
79	 28.80	0	153500..154117	-	205	148284076	-	OTBS_0155	-	hypothetical protein
80	 40.58	+2	154276..154482	+	68	148284077	rpsU	OTBS_0156	-	30S ribosomal protein S21
81	 27.66	-1	154511..154951	-	146	148284078	holC	OTBS_0157	-	DNA polymerase III chi subunit
82	 30.65	0	155109..156374	+	421	148284079	proP	OTBS_0158	-	proline/betaine transporter
83	 26.98	-1	157235..157942	+	235	148284080	-	OTBS_0160	-	hypothetical protein
84	 34.22	+1	158021..159256	+	411	148284081	ank2A2	OTBS_0161	-	ankyrin repeat-containing protein
85	 32.52	0	159357..161579	-	740	148284082	pnp	OTBS_0162	-	polynucleotide phosphorylase/polyadenylase
86	 29.63	0	161898..162167	-	89	148284083	rpsO	OTBS_0163	-	30S ribosomal protein S15
87	 32.55	0	162191..162958	-	255	148284084	truB	OTBS_0164	-	tRNA pseudouridine synthase B
88	 29.93	0	164424..164864	-	146	148284085	-	OTBS_0168	-	putative transcriptional regulator
89	 27.08	-1	165477..165764	-	95	148284086	-	OTBS_0170	-	hypothetical protein
90	 37.41	+2	167446..167715	-	89	148284087	traC	OTBS_0174	-	conjugative transfer protein
91	 30.92	0	171793..173034	-	413	148284088	tyrS	OTBS_0179	-	tyrosyl-tRNA synthetase
92	 28.57	0	174502..174816	+	104	148284089	tchB	OTBS_0181	-	hypothetical protein
93	 29.58	0	174810..175049	+	79	148284090	traV	OTBS_0182	-	conjugative transfer protein
94	 31.15	0	176307..177224	-	305	148284091	sppA	OTBS_0186	-	periplasmic serine proteases (ClpP class)
95	 33.19	0	177515..178864	+	449	148284092	miaB	OTBS_0187	-	MiaB-like tRNA modifying enzyme
96	 32.15	0	179019..179864	+	281	148284093	hemF	OTBS_0188	-	coproporphyrinogen III oxidase
97	 36.26	+1	180005..180346	+	113	148284094	-	OTBS_0189	-	hypothetical protein
98	 30.95	0	181605..181814	+	69	148284095	-	OTBS_0193	-	hypothetical protein
99	 30.60	0	181891..182073	-	60	148284096	-	OTBS_0194	-	hypothetical protein
100	 30.36	0	184608..184775	-	55	148284097	-	OTBS_0199	-	hypothetical protein
30.84	MEAN

3.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.