IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
867	 49.52	0	875696..876733	+	345	56551763	-	ZMO0867	-	nucleoside-diphosphate-sugar epimerase
868	 45.96	0	876733..877872	+	379	56551764	-	ZMO0868	-	glycosyltransferase
869	 46.53	0	877836..878729	+	297	56551765	-	ZMO0869	-	phytoene synthase-related protein
870	 48.17	0	878729..879604	+	291	56551766	-	ZMO0870	-	phytoene/squalene synthetase
871	 46.43	0	879601..880845	+	414	56551767	-	ZMO0871	-	putative oxidoreductase
872	 47.24	0	880860..882836	+	658	56551768	shc	ZMO0872	-	squalene--hopene cyclase
873	 47.05	0	882977..883654	+	225	56551769	deoD	ZMO0873	-	purine phosphorylase
874	 48.52	0	883598..884743	-	381	56551770	-	ZMO0874	-	Fe-S oxidoreductase
875	 50.64	0	884747..885769	-	340	56551771	ispH	ZMO0875	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
876	 47.21	0	886265..886855	+	196	56551772	-	ZMO0876	-	putative ABC-type transport system
877	 42.64	0	886925..887257	-	110	56551773	-	ZMO0877	-	hypothetical protein
878	 50.00	0	887245..888270	-	341	56551774	cheB	ZMO0878	-	protein-glutamate methylesterase
879	 27.56	-2	888437..888592	+	51	56551775	-	ZMO0879	-	hypothetical protein
880	 42.59	0	888627..890300	-	557	56551776	cheA	ZMO0880	-	chemotaxis sensor histidine kinase
881	 34.55	-2	890349..890513	+	54	56551777	-	ZMO0881	-	hypothetical protein
882	 43.80	0	890522..891925	-	467	56551778	mcpA	ZMO0882	-	methyl-accepting chemotaxis protein
883	 54.28	+1	892131..892679	-	182	56551779	rpsI	ZMO0883	-	30S ribosomal protein S9
884	 48.54	0	892679..893158	-	159	56551780	rplM	ZMO0884	-	50S ribosomal protein L13
885	 42.97	0	893488..893871	+	127	56551781	-	ZMO0885	-	hypothetical protein
886	 43.07	0	893934..894467	-	177	56551782	-	ZMO0886	-	hypothetical protein
887	 32.58	-2	894493..894624	-	43	56551783	-	ZMO0887	-	hypothetical protein
888	 44.86	0	894696..895250	-	184	56551784	-	ZMO0888	-	putative transposase
889	 47.45	0	895475..896629	-	384	56551785	mro	ZMO0889	-	aldose 1-epimerase precursor
890	 45.11	0	897157..898752	-	531	56551786	lysK	ZMO0890	-	lysyl-tRNA synthetase
891	 41.44	0	899038..899148	-	36	56551787	-	ZMO0891	-	hypothetical protein
892	 49.28	0	899175..901826	+	883	56551788	-	ZMO0892	-	DNA helicase
893	 47.95	0	901827..902873	-	348	56551789	-	ZMO0893	-	esterase
894	 42.95	0	902909..903823	-	304	56551790	-	ZMO0894	-	hypothetical protein
895	 33.33	-2	903986..904231	-	81	56551791	-	ZMO0895	-	hypothetical protein
896	 45.54	0	904858..905676	+	272	56551792	-	ZMO0896	-	hypothetical protein
897	 37.82	-1	905703..905858	+	51	56551793	-	ZMO0897	-	hypothetical protein
898	 39.62	-1	905752..905910	-	52	56551794	-	ZMO0898	-	hypothetical protein
899	 47.52	0	905909..907579	+	556	56551795	nadE	ZMO0899	-	NAD synthetase
900	 47.12	0	907592..908926	+	444	56551796	gltX	ZMO0900	-	glutamyl-tRNA synthetase
901	 42.65	0	908947..909150	-	67	56551797	-	ZMO0901	-	hypothetical protein
902	 46.17	0	909217..911475	-	752	56551798	-	ZMO0902	-	TonB dependent receptor
903	 48.79	0	911663..913363	-	566	56551799	leuA	ZMO0903	-	2-isopropylmalate synthase
904	 47.20	0	913683..916784	-	1033	56551800	bga	ZMO0904	-	beta-galactosidase
905	 47.39	0	917079..918650	+	523	56551801	mdoD	ZMO0905	-	glucan biosynthesis protein D
906	 44.94	0	918767..920308	+	513	56551802	-	ZMO0906	-	glucosyltransferase MdoH
907	 48.10	0	920280..920726	+	148	56551803	-	ZMO0907	-	membrane glycosyltransferase
908	 41.31	0	921179..922357	-	392	56551804	-	ZMO0908	-	capsule polysaccharide export protein
909	 39.11	-1	922393..923691	-	432	56551805	-	ZMO0909	-	glycosyltransferase
910	 40.76	-1	923648..924307	-	219	56551806	-	ZMO0910	-	putative polysaccharide export protein
911	 46.71	0	924590..925852	+	420	56551807	-	ZMO0911	-	periplasmic polysaccharide export protein
912	 43.17	0	926037..927917	+	626	56551808	-	ZMO0912	-	hypothetical protein
913	 48.23	0	927966..929066	-	366	56551809	ilvE	ZMO0913	-	branched-chain amino acid aminotransferase
914	 48.99	0	929116..930009	-	297	56551810	folD	ZMO0914	-	5,10-methylene-tetrahydrofolate dehydrogenase
915	 43.41	0	930236..932458	+	740	56551811	copA	ZMO0915	-	copper-transporting ATPase
916	 40.95	-1	932455..932664	+	69	56551812	-	ZMO0916	-	hypothetical protein
917	 46.34	0	933263..934669	+	468	56551813	-	ZMO0917	-	dioxygenase
918	 44.12	0	934833..936278	+	481	56551814	cat	ZMO0918	-	catalase
919	 39.08	-1	937704..939461	+	585	56551815	-	ZMO0919	-	two-component response regulator
920	 38.21	-1	939480..939869	-	129	56551816	-	ZMO0920	-	hypothetical protein
921	 44.71	0	940012..941145	+	377	56551817	-	ZMO0921	-	hypothetical protein
922	 45.19	0	941194..941640	+	148	56551818	-	ZMO0922	-	transcriptional regulator
923	 49.76	0	941681..942910	-	409	56551819	argJ	ZMO0923	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
924	 46.54	0	943263..946040	+	925	56551820	secA	ZMO0924	-	preprotein translocase subunit SecA
925	 39.43	-1	946264..946788	+	174	56551821	-	ZMO0925	-	cold shock protein
926	 45.29	0	946933..947442	+	169	56551822	-	ZMO0926	-	ABC transporter substrate-binding protein
927	 45.11	0	947945..948751	-	268	56551823	aat	ZMO0927	-	leucyl/phenylalanyl-tRNA--protein transferase
928	 50.62	0	948904..949464	+	186	56551824	-	ZMO0928	-	hypothetical protein
929	 43.65	0	949921..950046	-	41	56551825	-	ZMO0929	-	hypothetical protein
930	 47.85	0	950051..950491	-	146	56551826	-	ZMO0930	-	hypothetical protein
931	 45.05	0	950472..950693	-	73	56551827	-	ZMO0931	-	hypothetical protein
932	 47.64	0	950728..951279	-	183	56551828	-	ZMO0932	-	secretion activator protein
933	 40.00	-1	951241..951375	+	44	56551829	-	ZMO0933	-	hypothetical protein
934	 44.95	0	951420..951746	-	108	56551830	-	ZMO0934	-	hypothetical protein
935	 42.97	0	951972..952604	-	210	56551831	gstA	ZMO0935	-	glutathione S-transferase
936	 45.79	0	952890..953780	+	296	56551832	-	ZMO0936	-	drug/metabolite transporter
937	 43.06	0	953818..955041	-	407	56551833	-	ZMO0937	-	aromatic amino acid aminotransferase
938	 46.79	0	955358..957088	+	576	56551834	phoD	ZMO0938	-	alkaline phosphatase
939	 44.47	0	957092..958393	-	433	56551835	-	ZMO0939	-	guanine deaminase
940	 42.12	0	958406..958906	-	166	56551836	-	ZMO0940	-	transcriptional regulator
941	 41.72	0	959020..960021	-	333	56551837	-	ZMO0941	-	nucleotide sugar epimerase
942	 43.40	0	960224..961762	-	512	56551838	invA	ZMO0942	-	invertase A
943	 34.85	-2	961743..961874	-	43	56551839	-	ZMO0943	-	hypothetical protein
944	 32.54	-2	961792..961917	-	41	56551840	-	ZMO0944	-	hypothetical protein
945	 45.16	0	962101..962988	-	295	56551841	-	ZMO0945	-	hypothetical protein
946	 46.32	0	963329..964807	+	492	56551842	tig	ZMO0946	-	trigger factor
947	 44.72	0	964825..965790	+	321	56551843	-	ZMO0947	-	hypothetical protein
948	 46.45	0	965869..966501	+	210	56551844	clpP	ZMO0948	-	ATP-dependent Clp protease
949	 47.75	0	966651..967919	+	422	56551845	clpX	ZMO0949	-	ATP-dependent protease ATP-binding subunit
950	 41.01	-1	967976..968587	-	203	56551846	-	ZMO0950	-	acetyltransferase
951	 44.13	0	968591..969433	-	280	56551847	hemF	ZMO0951	-	coproporphyrinogen III oxidase
952	 52.07	+1	969435..969893	-	152	56551848	-	ZMO0952	-	RNA methyltransferase
953	 31.67	-2	969917..970036	+	39	56551849	-	ZMO0953	-	hypothetical protein
954	 39.64	-1	970001..970111	-	36	56551850	-	ZMO0954	-	hypothetical protein
955	 39.86	-1	970808..971083	-	91	56551851	-	ZMO0955	-	hypothetical protein
956	 51.97	+1	972065..972697	+	210	56551852	-	ZMO0956	-	ubiquinol-cytochrome-c reductase
957	 45.27	0	972705..973961	+	418	56551853	-	ZMO0957	-	cytochrome b subunit
958	 48.10	0	973963..974802	+	279	56551854	petC	ZMO0958	-	cytochrome c1
959	 48.15	0	974732..975298	-	188	56551855	-	ZMO0959	-	membrane carboxypeptidase
960	 44.27	0	975315..975506	-	63	56551856	-	ZMO0960	-	hypothetical protein
961	 49.78	0	975661..976110	+	149	56551857	cyc_c552	ZMO0961	-	cytochrome c-552 precursor
962	 47.73	0	976118..977263	-	381	56551858	nagA	ZMO0962	-	N-acetylglucosamine-6-phosphate deacetylase
963	 43.32	0	977339..977959	-	206	56551859	-	ZMO0963	-	TetR family transcriptional regulator
964	 52.09	+1	978061..979494	+	477	56551860	-	ZMO0964	-	multidrug resistance lipoprotein
965	 50.00	0	979516..980721	+	401	56551861	-	ZMO0965	-	putative aromatic efflux pump membrane protein
966	 46.84	0	980699..981712	+	337	56551862	emrB	ZMO0966	-	multidrug resistance protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.