IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
771	 39.58	-1	767231..767422	+	63	56551667	-	ZMO0771	-	hypothetical protein
772	 42.22	0	767352..767486	+	44	56551668	-	ZMO0772	-	hypothetical protein
773	 50.21	0	767459..767926	+	155	56551669	-	ZMO0773	-	peptidyl-prolyl cis-trans isomerase
774	 48.67	0	767937..768836	-	299	56551670	-	ZMO0774	-	transcriptional regulator
775	 35.15	-2	768868..769032	+	54	56551671	-	ZMO0775	-	hypothetical protein
776	 45.93	0	769365..769991	+	208	56551672	pmtA	ZMO0776	-	phospholipid N-methyltransferase
777	 47.66	0	770021..770704	-	227	56551673	-	ZMO0777	-	metallo-beta-lactamase family protein
778	 47.01	0	770972..771373	+	133	56551674	ragC	ZMO0778	-	cation/multidrug efflux pump
779	 49.80	0	774196..775434	+	412	56551675	-	ZMO0779	-	membrane-fusion protein
780	 51.56	0	775412..776914	+	500	56551676	-	ZMO0780	-	outer membrane protein
781	 47.05	0	777103..778050	+	315	56551677	-	ZMO0781	-	LysR family transcriptional regulator
782	 49.22	0	778126..779661	-	511	56551678	gatB	ZMO0782	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
783	 52.33	+1	779600..781078	-	492	56551679	gatA	ZMO0783	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
784	 51.55	0	781078..781368	-	96	56551680	gatC	ZMO0784	-	glutamyl-tRNA(Gln) amidotransferase subunit C
785	 46.67	0	781602..782141	+	179	56551681	-	ZMO0785	-	endonuclease
786	 49.02	0	782345..782905	+	186	56551682	-	ZMO0786	-	hypothetical protein
787	 48.65	0	782963..784549	+	528	56551683	-	ZMO0787	-	choline dehydrogenase
788	 47.56	0	784559..786076	+	505	56551684	sldC	ZMO0788	-	sorbitol dehydrogenase cytochrome c subunit
789	 44.18	0	786394..788919	+	841	56551685	-	ZMO0789	-	TonB-dependent receptor
790	 32.56	-2	789561..789689	+	42	56551686	-	ZMO0790	-	hypothetical protein
791	 50.52	0	789730..790689	+	319	56551687	pyrB	ZMO0791	-	aspartate carbamoyltransferase catalytic subunit
792	 50.20	0	790686..791912	+	408	56551688	pyrC	ZMO0792	-	dihydroorotase
793	 44.77	0	792024..792644	+	206	56551689	-	ZMO0793	-	hypothetical protein
794	 48.41	0	792691..794739	-	682	56551690	-	ZMO0794	-	prolyl oligopeptidase family protein
795	 47.78	0	794852..797032	-	726	56551691	-	ZMO0795	-	iron transport receptor
796	 49.70	0	797182..797346	-	54	56551692	-	ZMO0796	-	hypothetical protein
797	 49.49	0	797602..798387	-	261	56551693	-	ZMO0797	-	dehydrogenase
798	 48.80	0	798615..800030	-	471	56551694	-	ZMO0798	-	outer membrane protein
799	 48.32	0	800030..801157	-	375	56551695	-	ZMO0799	-	hypothetical protein
800	 48.71	0	801161..803989	-	942	56551696	-	ZMO0800	-	hypothetical protein
801	 51.10	0	803934..804980	-	348	56551697	-	ZMO0801	-	membrane-fusion protein
802	 37.37	-1	805127..805324	-	65	56551698	-	ZMO0802	-	hypothetical protein
803	 50.47	0	805403..807001	-	532	56551699	-	ZMO0803	-	hypothetical protein
804	 48.35	0	807172..808110	-	312	56551700	argC	ZMO0804	-	N-acetyl-gamma-glutamyl-phosphate reductase
805	 48.73	0	808113..809015	-	300	56551701	-	ZMO0805	-	hypothetical protein
806	 50.90	0	809099..810493	-	464	56551702	pepA	ZMO0806	-	leucyl aminopeptidase
807	 51.08	0	810637..811932	-	431	56551703	-	ZMO0807	-	hypothetical protein
808	 46.33	0	811895..812071	-	58	56551704	-	ZMO0808	-	hypothetical protein
809	 47.95	0	812213..812554	-	113	56551705	-	ZMO0809	-	hypothetical protein
810	 52.57	+1	812569..813306	-	245	56551706	truA	ZMO0810	-	tRNA pseudouridine synthase A
811	 51.77	+1	813303..814208	-	301	56551707	fmt	ZMO0811	-	methionyl-tRNA formyltransferase
812	 50.08	0	814355..814951	+	198	56551708	recR	ZMO0812	-	recombinational DNA repair protein
813	 45.51	0	814974..815507	+	177	56551709	defA	ZMO0813	-	polypeptide deformylase
814	 45.95	0	815592..816938	+	448	56551710	-	ZMO0814	-	DNA recombination protein
815	 60.00	+2	816975..817214	-	79	56551711	-	ZMO0815	-	hypothetical protein
816	 36.88	-1	817251..817391	-	46	56551712	-	ZMO0816	-	hypothetical protein
817	 45.27	0	817426..817626	-	66	56551713	-	ZMO0817	-	hypothetical protein
818	 47.34	0	817881..818237	+	118	56551714	ygcM	ZMO0818	-	putative 6-pyruvol tetrahydrobiopterin synthase
819	 46.58	0	818450..819763	+	437	56551715	ugd	ZMO0819	-	UDP-glucose 6-dehydrogenase
820	 50.84	0	819840..822044	-	734	56551716	pur-q	ZMO0820	-	phosphoribosylformylglycinamidine synthase II
821	 47.34	0	822192..823205	+	337	56551717	cysZ	ZMO0821	-	cysteine synthase A
822	 49.04	0	823275..823637	+	120	56551718	-	ZMO0822	-	hypothetical protein
823	 48.05	0	824847..825845	+	332	56551719	mraW	ZMO0823	-	S-adenosyl-methyltransferase
824	 46.53	0	825842..826432	+	196	56551720	-	ZMO0824	-	hypothetical protein
825	 50.28	0	826510..828144	+	544	56551721	pbp	ZMO0825	-	penicillin-binding protein
826	 48.73	0	828144..829520	+	458	56551722	murE	ZMO0826	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
827	 46.98	0	829602..830993	+	463	56551723	murF	ZMO0827	-	UDP-N-acetylmuramyl pentapeptide synthase
828	 47.99	0	830981..832051	+	356	56551724	mraY	ZMO0828	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
829	 48.42	0	832048..833373	+	441	56551725	murD	ZMO0829	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
830	 47.98	0	833373..834608	+	411	56551726	ftsW	ZMO0830	-	cell division protein
831	 50.69	0	834605..835768	+	387	56551727	murG	ZMO0831	-	N-acetylglucosaminyl transferase
832	 48.92	0	835765..837195	+	476	56551728	murC	ZMO0832	-	UDP-N-acetylmuramate--L-alanine ligase
833	 47.91	0	837192..838124	+	310	56551729	murB	ZMO0833	-	UDP-N-acetylenolpyruvoylglucosamine reductase
834	 47.72	0	838121..839086	+	321	56551730	ddl	ZMO0834	-	D-alanyl-D-alanine ligase
835	 48.21	0	839250..840029	+	259	56551731	ftsQ	ZMO0835	-	cell division protein
836	 49.64	0	840047..841309	+	420	56551732	ftsA	ZMO0836	-	cell division protein
837	 51.13	0	841526..842935	+	469	56551733	ftsZ	ZMO0837	-	cell division protein FtsZ
838	 48.37	0	843134..843871	+	245	56551734	-	ZMO0838	-	hypothetical protein
839	 47.66	0	843855..844517	+	220	56551735	-	ZMO0839	-	hypothetical protein
840	 44.44	0	844676..845080	+	134	56551736	-	ZMO0840	-	hypothetical protein
841	 48.59	0	845077..846354	+	425	56551737	clc-b	ZMO0841	-	chloride channel protein-related protein
842	 47.55	0	846462..847622	+	386	56551738	dgtP	ZMO0842	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
843	 49.30	0	847823..849319	+	498	56551739	argS	ZMO0843	-	arginyl-tRNA synthetase
844	 51.37	0	849582..850679	+	365	56551740	-	ZMO0844	-	hypothetical protein
845	 45.82	0	850820..851548	+	242	56551741	alaS	ZMO0845	-	alanyl-tRNA synthetase
846	 49.52	0	853569..855341	-	590	56551742	kefB	ZMO0846	-	glutathione-regulated potassium-efflux system protein
847	 47.59	0	856042..857928	+	628	56551743	oprB	ZMO0847	-	outer membrane porin precursor
848	 40.27	-1	858215..858589	-	124	56551744	-	ZMO0848	-	hypothetical protein
849	 41.11	-1	858704..859744	-	346	56551745	-	ZMO0849	-	hypothetical protein
850	 44.95	0	860529..861647	+	372	56551746	ntrC	ZMO0850	-	polar flagellar protein
851	 49.57	0	861687..862265	-	192	56551747	pdxH	ZMO0851	-	pyridoxamine 5'-phosphate oxidase
852	 47.23	0	862331..863359	-	342	56551748	-	ZMO0852	-	S-adenosylmethionine:tRNA-ribosyltransferase
853	 50.39	0	863396..864040	-	214	56551749	-	ZMO0853	-	peptidyl-prolyl cis-trans isomerase
854	 44.69	0	864466..865002	-	178	56551750	coaD	ZMO0854	-	phosphopantetheine adenylyltransferase
855	 50.50	0	865086..865982	-	298	56551751	ispA	ZMO0855	-	geranyltranstransferase
856	 47.56	0	865992..866237	-	81	56551752	xseB	ZMO0856	-	exodeoxyribonuclease VII small subunit
857	 47.17	0	866314..866985	-	223	56551753	-	ZMO0857	-	hypothetical protein
858	 51.75	+1	867407..868036	+	209	56551754	nifS	ZMO0858	-	cysteine desulfurase
859	 49.02	0	868116..868523	+	135	56551755	-	ZMO0859	-	hypothetical protein
860	 45.71	0	868533..868847	+	104	56551756	-	ZMO0860	-	ferredoxin
861	 46.63	0	869204..871090	+	628	161611320	dnaZX	ZMO0861	-	DNA polymerase III subunits gamma and tau
862	 48.65	0	871249..871581	+	110	56551758	-	ZMO0862	-	hypothetical protein
863	 48.29	0	871633..872187	-	184	161611319	dcd	ZMO0863	-	deoxycytidine triphosphate deaminase
864	 48.35	0	872241..872726	-	161	56551760	cdd	ZMO0864	-	cytidine deaminase
865	 48.76	0	872822..874357	+	511	56551761	dnaB	ZMO0865	-	replicative DNA helicase
866	 43.65	0	874473..875441	+	322	56551762	-	ZMO0866	-	cation efflux system protein
867	 49.52	0	875696..876733	+	345	56551763	-	ZMO0867	-	nucleoside-diphosphate-sugar epimerase
868	 45.96	0	876733..877872	+	379	56551764	-	ZMO0868	-	glycosyltransferase
869	 46.53	0	877836..878729	+	297	56551765	-	ZMO0869	-	phytoene synthase-related protein
870	 48.17	0	878729..879604	+	291	56551766	-	ZMO0870	-	phytoene/squalene synthetase
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.