IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
737	 47.85	0	737528..737968	-	146	56551633	aroD	ZMO0737	-	3-dehydroquinate dehydratase
738	 50.50	0	738047..739042	+	331	56551634	thiG	ZMO0738	-	bifunctional sulfur carrier protein/thiazole synthase protein
739	 45.12	0	739109..739405	-	98	56551635	-	ZMO0739	-	hypothetical protein
740	 43.96	0	739626..739898	+	90	56551636	-	ZMO0740	-	hypothetical protein
741	 42.59	0	739973..740080	-	35	56551637	-	ZMO0741	-	hypothetical protein
742	 41.88	0	740102..740218	+	38	56551638	-	ZMO0742	-	hypothetical protein
743	 48.43	0	740230..741819	+	529	56551639	prfC	ZMO0743	-	peptide chain release factor RF-3
744	 45.32	0	741978..742778	+	266	56551640	-	ZMO0744	-	hypothetical protein
745	 43.67	0	742896..743369	+	157	56551641	-	ZMO0745	-	hypothetical protein
746	 45.88	0	743990..744523	+	177	56551642	-	ZMO0746	-	hypothetical protein
747	 51.67	0	744627..745046	+	139	56551643	-	ZMO0747	-	hypothetical protein
748	 48.81	0	745089..746012	-	307	56551644	cysK	ZMO0748	-	cysteine synthase
749	 49.17	0	746222..747130	-	302	56551645	rpoH	ZMO0749	-	RNA polymerase factor sigma-32
750	 49.90	0	747183..748136	-	317	56551646	rluD	ZMO0750	-	pseudouridine synthase D large subunit
751	 45.61	0	748181..748636	+	151	56551647	-	ZMO0751	-	metal-dependent protease
752	 47.37	0	748754..749380	+	208	56551648	-	ZMO0752	-	hypothetical protein
753	 46.27	0	749552..749806	+	84	56551649	-	ZMO0753	-	glutaredoxin 3
754	 46.53	0	749844..750146	+	100	56551650	-	ZMO0754	-	hypothetical protein
755	 46.12	0	750221..751252	-	343	56551651	-	ZMO0755	-	hypothetical protein
756	 45.08	0	751227..751643	-	138	56551652	-	ZMO0756	-	hypothetical protein
757	 45.09	0	751754..752884	-	376	56551653	-	ZMO0757	-	hypothetical protein
758	 48.54	0	752868..753518	-	216	56551654	dhbB	ZMO0758	-	putative isochorismatase
759	 46.83	0	753556..754281	-	241	56551655	-	ZMO0759	-	Zn-dependent hydrolase
760	 47.73	0	754322..754717	-	131	56551656	gloA	ZMO0760	-	lactoylglutathione lyase
761	 45.65	0	754406..754819	+	137	56551657	gloA	ZMO0761	-	lactoylglutathione lyase
762	 39.62	-1	754695..754853	-	52	56551658	-	ZMO0762	-	hypothetical protein
763	 51.75	+1	754938..755963	-	341	56551659	-	ZMO0763	-	hypothetical protein
764	 48.52	0	755989..756732	-	247	56551660	-	ZMO0764	-	hydrolase
765	 48.94	0	756996..758975	+	659	56551661	thrS	ZMO0765	-	threonyl-tRNA synthetase
766	 47.03	0	758989..761769	+	926	56551662	glnD	ZMO0766	-	PII uridylyl-transferase
767	 49.28	0	761963..764182	+	739	56551663	-	ZMO0767	-	hypothetical protein
768	 41.96	0	764208..764462	-	84	56551664	-	ZMO0768	-	hypothetical protein
769	 47.22	0	764537..765688	+	383	56551665	trmU	ZMO0769	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
770	 49.80	0	765771..767246	-	491	56551666	mgtE	ZMO0770	-	Mg/Co/Ni transporter
771	 39.58	-1	767231..767422	+	63	56551667	-	ZMO0771	-	hypothetical protein
772	 42.22	0	767352..767486	+	44	56551668	-	ZMO0772	-	hypothetical protein
773	 50.21	0	767459..767926	+	155	56551669	-	ZMO0773	-	peptidyl-prolyl cis-trans isomerase
774	 48.67	0	767937..768836	-	299	56551670	-	ZMO0774	-	transcriptional regulator
775	 35.15	-2	768868..769032	+	54	56551671	-	ZMO0775	-	hypothetical protein
776	 45.93	0	769365..769991	+	208	56551672	pmtA	ZMO0776	-	phospholipid N-methyltransferase
777	 47.66	0	770021..770704	-	227	56551673	-	ZMO0777	-	metallo-beta-lactamase family protein
778	 47.01	0	770972..771373	+	133	56551674	ragC	ZMO0778	-	cation/multidrug efflux pump
779	 49.80	0	774196..775434	+	412	56551675	-	ZMO0779	-	membrane-fusion protein
780	 51.56	0	775412..776914	+	500	56551676	-	ZMO0780	-	outer membrane protein
781	 47.05	0	777103..778050	+	315	56551677	-	ZMO0781	-	LysR family transcriptional regulator
782	 49.22	0	778126..779661	-	511	56551678	gatB	ZMO0782	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
783	 52.33	+1	779600..781078	-	492	56551679	gatA	ZMO0783	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
784	 51.55	0	781078..781368	-	96	56551680	gatC	ZMO0784	-	glutamyl-tRNA(Gln) amidotransferase subunit C
785	 46.67	0	781602..782141	+	179	56551681	-	ZMO0785	-	endonuclease
786	 49.02	0	782345..782905	+	186	56551682	-	ZMO0786	-	hypothetical protein
787	 48.65	0	782963..784549	+	528	56551683	-	ZMO0787	-	choline dehydrogenase
788	 47.56	0	784559..786076	+	505	56551684	sldC	ZMO0788	-	sorbitol dehydrogenase cytochrome c subunit
789	 44.18	0	786394..788919	+	841	56551685	-	ZMO0789	-	TonB-dependent receptor
790	 32.56	-2	789561..789689	+	42	56551686	-	ZMO0790	-	hypothetical protein
791	 50.52	0	789730..790689	+	319	56551687	pyrB	ZMO0791	-	aspartate carbamoyltransferase catalytic subunit
792	 50.20	0	790686..791912	+	408	56551688	pyrC	ZMO0792	-	dihydroorotase
793	 44.77	0	792024..792644	+	206	56551689	-	ZMO0793	-	hypothetical protein
794	 48.41	0	792691..794739	-	682	56551690	-	ZMO0794	-	prolyl oligopeptidase family protein
795	 47.78	0	794852..797032	-	726	56551691	-	ZMO0795	-	iron transport receptor
796	 49.70	0	797182..797346	-	54	56551692	-	ZMO0796	-	hypothetical protein
797	 49.49	0	797602..798387	-	261	56551693	-	ZMO0797	-	dehydrogenase
798	 48.80	0	798615..800030	-	471	56551694	-	ZMO0798	-	outer membrane protein
799	 48.32	0	800030..801157	-	375	56551695	-	ZMO0799	-	hypothetical protein
800	 48.71	0	801161..803989	-	942	56551696	-	ZMO0800	-	hypothetical protein
801	 51.10	0	803934..804980	-	348	56551697	-	ZMO0801	-	membrane-fusion protein
802	 37.37	-1	805127..805324	-	65	56551698	-	ZMO0802	-	hypothetical protein
803	 50.47	0	805403..807001	-	532	56551699	-	ZMO0803	-	hypothetical protein
804	 48.35	0	807172..808110	-	312	56551700	argC	ZMO0804	-	N-acetyl-gamma-glutamyl-phosphate reductase
805	 48.73	0	808113..809015	-	300	56551701	-	ZMO0805	-	hypothetical protein
806	 50.90	0	809099..810493	-	464	56551702	pepA	ZMO0806	-	leucyl aminopeptidase
807	 51.08	0	810637..811932	-	431	56551703	-	ZMO0807	-	hypothetical protein
808	 46.33	0	811895..812071	-	58	56551704	-	ZMO0808	-	hypothetical protein
809	 47.95	0	812213..812554	-	113	56551705	-	ZMO0809	-	hypothetical protein
810	 52.57	+1	812569..813306	-	245	56551706	truA	ZMO0810	-	tRNA pseudouridine synthase A
811	 51.77	+1	813303..814208	-	301	56551707	fmt	ZMO0811	-	methionyl-tRNA formyltransferase
812	 50.08	0	814355..814951	+	198	56551708	recR	ZMO0812	-	recombinational DNA repair protein
813	 45.51	0	814974..815507	+	177	56551709	defA	ZMO0813	-	polypeptide deformylase
814	 45.95	0	815592..816938	+	448	56551710	-	ZMO0814	-	DNA recombination protein
815	 60.00	+2	816975..817214	-	79	56551711	-	ZMO0815	-	hypothetical protein
816	 36.88	-1	817251..817391	-	46	56551712	-	ZMO0816	-	hypothetical protein
817	 45.27	0	817426..817626	-	66	56551713	-	ZMO0817	-	hypothetical protein
818	 47.34	0	817881..818237	+	118	56551714	ygcM	ZMO0818	-	putative 6-pyruvol tetrahydrobiopterin synthase
819	 46.58	0	818450..819763	+	437	56551715	ugd	ZMO0819	-	UDP-glucose 6-dehydrogenase
820	 50.84	0	819840..822044	-	734	56551716	pur-q	ZMO0820	-	phosphoribosylformylglycinamidine synthase II
821	 47.34	0	822192..823205	+	337	56551717	cysZ	ZMO0821	-	cysteine synthase A
822	 49.04	0	823275..823637	+	120	56551718	-	ZMO0822	-	hypothetical protein
823	 48.05	0	824847..825845	+	332	56551719	mraW	ZMO0823	-	S-adenosyl-methyltransferase
824	 46.53	0	825842..826432	+	196	56551720	-	ZMO0824	-	hypothetical protein
825	 50.28	0	826510..828144	+	544	56551721	pbp	ZMO0825	-	penicillin-binding protein
826	 48.73	0	828144..829520	+	458	56551722	murE	ZMO0826	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
827	 46.98	0	829602..830993	+	463	56551723	murF	ZMO0827	-	UDP-N-acetylmuramyl pentapeptide synthase
828	 47.99	0	830981..832051	+	356	56551724	mraY	ZMO0828	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
829	 48.42	0	832048..833373	+	441	56551725	murD	ZMO0829	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
830	 47.98	0	833373..834608	+	411	56551726	ftsW	ZMO0830	-	cell division protein
831	 50.69	0	834605..835768	+	387	56551727	murG	ZMO0831	-	N-acetylglucosaminyl transferase
832	 48.92	0	835765..837195	+	476	56551728	murC	ZMO0832	-	UDP-N-acetylmuramate--L-alanine ligase
833	 47.91	0	837192..838124	+	310	56551729	murB	ZMO0833	-	UDP-N-acetylenolpyruvoylglucosamine reductase
834	 47.72	0	838121..839086	+	321	56551730	ddl	ZMO0834	-	D-alanyl-D-alanine ligase
835	 48.21	0	839250..840029	+	259	56551731	ftsQ	ZMO0835	-	cell division protein
836	 49.64	0	840047..841309	+	420	56551732	ftsA	ZMO0836	-	cell division protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.