IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
662	 47.61	0	654569..655864	-	431	56551558	purB	ZMO0662	-	adenylosuccinate lyase
663	 47.51	0	656004..656687	-	227	56551559	radC	ZMO0663	-	DNA repair protein
664	 43.52	0	656842..659982	+	1046	56551560	-	ZMO0664	-	exoproteins
665	 44.78	0	660037..660237	+	66	56551561	-	ZMO0665	-	hypothetical protein
666	 48.62	0	660234..660632	+	132	56551562	-	ZMO0666	-	hypothetical protein
667	 48.19	0	661242..662042	+	266	56551563	atpB	ZMO0667	-	F0F1 ATP synthase subunit A
668	 55.00	+1	662078..662317	+	79	56551564	atpE	ZMO0668	-	ATP synthase C chain
669	 48.90	0	662439..662939	+	166	56551565	atpG	ZMO0669	-	ATP synthase B chain
670	 53.49	+1	662953..663210	+	85	56551566	-	ZMO0670	-	hypothetical protein
671	 47.99	0	663245..663592	+	115	56551567	atpF	ZMO0671	-	ATP synthase subunit b
672	 43.21	0	663747..665741	+	664	56551568	uvrC	ZMO0672	-	excinuclease ABC subunit C
673	 42.82	0	665783..666541	+	252	56551569	recO	ZMO0673	-	DNA repair protein RecO
674	 46.10	0	666579..667103	+	174	56551570	-	ZMO0674	-	hypothetical protein
675	 46.05	0	667104..667913	-	269	56551571	-	ZMO0675	-	LysR family transcriptional regulator
676	 48.97	0	667980..669188	-	402	56551572	-	ZMO0676	-	cystathionine beta-lyase
677	 48.10	0	669255..670304	-	349	56551573	leuB	ZMO0677	-	3-isopropylmalate dehydrogenase
678	 46.15	0	670437..671060	-	207	56551574	tdsD	ZMO0678	-	nitroreductase
679	 23.53	-2	671150..671251	+	33	56551575	-	ZMO0679	-	hypothetical protein
680	 44.03	0	671414..672451	+	345	56551576	-	ZMO0680	-	hypothetical protein
681	 43.72	0	672448..674391	+	647	56551577	-	ZMO0681	-	hypothetical protein
682	 42.05	0	675915..677234	+	439	56551578	-	ZMO0682	-	hypothetical protein
683	 40.75	-1	677276..678259	+	327	56551579	-	ZMO0683	-	hypothetical protein
684	 43.13	0	678308..679348	+	346	56551580	-	ZMO0684	-	hypothetical protein
685	 41.50	0	679332..679919	+	195	56551581	-	ZMO0685	-	hypothetical protein
686	 34.75	-2	680361..680783	+	140	56551582	-	ZMO0686	-	hypothetical protein
687	 45.61	0	680870..682531	-	553	56551583	budB	ZMO0687	-	acetolactate synthase
688	 36.49	-1	682595..683101	-	168	56551584	-	ZMO0688	-	permease
689	 50.84	0	683751..685052	-	433	56551585	gfo	ZMO0689	-	glucose-fructose oxidoreductase chain A
690	 21.97	-2	685469..685600	-	43	56551586	-	ZMO0690	-	hypothetical protein
691	 45.71	0	685680..687020	-	446	56551587	gid	ZMO0691	-	tRNA (uracil-5-)-methyltransferase Gid
692	 49.50	0	687069..689846	-	925	56551588	gyrA	ZMO0692	-	DNA gyrase subunit A
693	 49.53	0	689915..690340	-	141	56551589	-	ZMO0693	-	organic hydroperoxide resistance protein
694	 43.94	0	690622..691347	-	241	56551590	-	ZMO0694	-	hypothetical protein
695	 46.42	0	692058..695633	-	1191	56551591	-	ZMO0695	-	hypothetical protein
696	 37.96	-1	695694..695801	-	35	56551592	-	ZMO0696	-	hypothetical protein
697	 41.36	0	696099..696422	-	107	56551593	sugE	ZMO0697	-	multidrug resistance protein
698	 44.58	0	696489..696995	-	168	56551594	-	ZMO0698	-	hypothetical protein
699	 40.10	-1	697132..697323	+	63	56551595	-	ZMO0699	-	hypothetical protein
700	 50.39	0	697330..698367	-	345	56551596	pepX	ZMO0700	-	dipeptidyl aminopeptidase
701	 48.89	0	698222..699346	-	374	56551599	-	ZMO0703	-	colicin tolerance protein
702	 52.94	+1	699327..699479	-	50	56551597	-	ZMO0701	-	hypothetical protein
703	 38.64	-1	699510..699641	-	43	56551598	-	ZMO0702	-	hypothetical protein
704	 49.41	0	699983..701431	-	482	56551600	-	ZMO0704	-	acyl-CoA synthase
705	 39.57	-1	701467..702075	+	202	56551601	-	ZMO0705	-	hypothetical protein
706	 48.46	0	702084..702731	-	215	56551602	nth	ZMO0706	-	endonuclease III
707	 52.42	+1	702728..703492	-	254	56551603	dapB	ZMO0707	-	dihydrodipicolinate reductase
708	 50.88	0	703497..704123	-	208	56551604	purN	ZMO0708	-	folate-dependent phosphoribosylglycinamide formyltransferase
709	 51.41	0	704116..705216	-	366	56551605	purM	ZMO0709	-	phosphoribosylaminoimidazole synthetase
710	 46.36	0	705271..706368	+	365	56551606	-	ZMO0710	-	hypothetical protein
711	 49.30	0	706372..707016	+	214	56551607	-	ZMO0711	-	ATPase
712	 46.80	0	707198..709351	+	717	56551608	ppk	ZMO0712	-	polyphosphate kinase
713	 46.76	0	709518..711044	+	508	56551609	-	ZMO0713	-	exopolyphosphatase
714	 48.34	0	711122..712294	-	390	56551610	rnd	ZMO0714	-	ribonuclease D
715	 49.86	0	712396..714186	+	596	56551611	aspS	ZMO0715	-	aspartyl-tRNA synthetase
716	 45.93	0	714219..715004	+	261	56551612	-	ZMO0716	-	hypothetical protein
717	 41.44	0	714970..715080	-	36	56551613	-	ZMO0717	-	hypothetical protein
718	 49.80	0	715052..715549	-	165	56551614	greB	ZMO0718	-	transcription elongation factor
719	 51.05	0	715624..717717	-	697	56551615	-	ZMO0719	-	transglycosylase
720	 49.32	0	717739..718614	+	291	56551616	dapA	ZMO0720	-	dihydrodipicolinate synthase
721	 46.17	0	718618..719100	+	160	56551617	smpB	ZMO0721	-	SsrA-binding protein
722	 48.68	0	719295..721340	+	681	56551618	-	ZMO0722	-	metallopeptidase
723	 47.13	0	721767..722324	-	185	56551619	nusG	ZMO0723	-	transcription antiterminator
724	 46.30	0	722013..722552	+	179	56551620	nusG	ZMO0724	-	transcription antiterminator
725	 49.77	0	722639..723070	+	143	56551621	rplK	ZMO0725	-	50S ribosomal protein L11
726	 51.99	+1	723075..723776	+	233	56551622	rplA	ZMO0726	-	50S ribosomal protein L1
727	 54.65	+1	724041..724556	+	171	56551623	rplJ	ZMO0727	-	50S ribosomal protein L10
728	 49.72	0	724553..724906	-	117	56551625	-	ZMO0729	-	ribosomal protein L7/L12
729	 51.34	0	724614..724985	+	123	56551624	rplL	ZMO0728	-	50S ribosomal protein L7/L12
730	 44.28	0	725219..725419	-	66	56551626	-	ZMO0730	-	hypothetical protein
731	 50.05	0	725449..729654	+	1401	56551627	rpoB	ZMO0731	-	DNA-directed RNA polymerase subunit beta
732	 49.66	0	729737..733912	+	1391	56551628	-	ZMO0732	-	DNA-directed RNA polymerase subunit beta'
733	 42.02	0	734041..734535	-	164	56551629	-	ZMO0733	-	putative acetyltransferase
734	 46.76	0	734709..735527	+	272	56551630	pssB	ZMO0734	-	exopolysaccharide production protein
735	 50.74	0	735587..736873	-	428	56551631	accC	ZMO0735	-	acetyl-CoA carboxylase
736	 52.38	+1	736950..737432	-	160	56551632	-	ZMO0736	-	acetyl-CoA carboxylase
737	 47.85	0	737528..737968	-	146	56551633	aroD	ZMO0737	-	3-dehydroquinate dehydratase
738	 50.50	0	738047..739042	+	331	56551634	thiG	ZMO0738	-	bifunctional sulfur carrier protein/thiazole synthase protein
739	 45.12	0	739109..739405	-	98	56551635	-	ZMO0739	-	hypothetical protein
740	 43.96	0	739626..739898	+	90	56551636	-	ZMO0740	-	hypothetical protein
741	 42.59	0	739973..740080	-	35	56551637	-	ZMO0741	-	hypothetical protein
742	 41.88	0	740102..740218	+	38	56551638	-	ZMO0742	-	hypothetical protein
743	 48.43	0	740230..741819	+	529	56551639	prfC	ZMO0743	-	peptide chain release factor RF-3
744	 45.32	0	741978..742778	+	266	56551640	-	ZMO0744	-	hypothetical protein
745	 43.67	0	742896..743369	+	157	56551641	-	ZMO0745	-	hypothetical protein
746	 45.88	0	743990..744523	+	177	56551642	-	ZMO0746	-	hypothetical protein
747	 51.67	0	744627..745046	+	139	56551643	-	ZMO0747	-	hypothetical protein
748	 48.81	0	745089..746012	-	307	56551644	cysK	ZMO0748	-	cysteine synthase
749	 49.17	0	746222..747130	-	302	56551645	rpoH	ZMO0749	-	RNA polymerase factor sigma-32
750	 49.90	0	747183..748136	-	317	56551646	rluD	ZMO0750	-	pseudouridine synthase D large subunit
751	 45.61	0	748181..748636	+	151	56551647	-	ZMO0751	-	metal-dependent protease
752	 47.37	0	748754..749380	+	208	56551648	-	ZMO0752	-	hypothetical protein
753	 46.27	0	749552..749806	+	84	56551649	-	ZMO0753	-	glutaredoxin 3
754	 46.53	0	749844..750146	+	100	56551650	-	ZMO0754	-	hypothetical protein
755	 46.12	0	750221..751252	-	343	56551651	-	ZMO0755	-	hypothetical protein
756	 45.08	0	751227..751643	-	138	56551652	-	ZMO0756	-	hypothetical protein
757	 45.09	0	751754..752884	-	376	56551653	-	ZMO0757	-	hypothetical protein
758	 48.54	0	752868..753518	-	216	56551654	dhbB	ZMO0758	-	putative isochorismatase
759	 46.83	0	753556..754281	-	241	56551655	-	ZMO0759	-	Zn-dependent hydrolase
760	 47.73	0	754322..754717	-	131	56551656	gloA	ZMO0760	-	lactoylglutathione lyase
761	 45.65	0	754406..754819	+	137	56551657	gloA	ZMO0761	-	lactoylglutathione lyase
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.