IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
21	 49.48	0	23797..25239	-	480	56550917	ykgF	ZMO0021	-	electron transport protein
22	 49.06	0	25239..25982	-	247	56550918	-	ZMO0022	-	Fe-S oxidoreductase
23	 43.19	0	26353..26829	-	158	56550919	-	ZMO0023	-	transcriptional regulator
24	 48.33	0	26925..27104	+	59	56550920	-	ZMO0024	-	integral membrane protein
25	 48.65	0	27151..27855	+	234	56550921	-	ZMO0025	-	hypothetical protein
26	 48.10	0	28030..28977	+	315	56550922	-	ZMO0026	-	hypothetical protein
27	 51.09	0	29294..30898	+	534	56550923	purH	ZMO0027	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
28	 46.86	0	31084..32007	+	307	56550924	-	ZMO0028	-	mrr restriction system protein
29	 43.44	0	32037..33935	-	632	56550925	-	ZMO0029	-	hypothetical protein
30	 43.14	0	34225..34632	+	135	56550926	gloA	ZMO0030	-	lactoylglutathione lyase
31	 47.96	0	34636..37056	-	806	56550927	-	ZMO0031	-	TonB-dependent receptor
32	 30.83	-2	37273..37392	+	39	56550928	-	ZMO0032	-	hypothetical protein
33	 49.43	0	37404..37838	-	144	56550929	-	ZMO0033	-	hypothetical protein
34	 33.33	-2	37839..37997	-	52	56550930	-	ZMO0034	-	hypothetical protein
35	 49.25	0	38018..38620	+	200	56550931	-	ZMO0035	-	hypothetical protein
36	 52.80	+1	38624..38962	-	112	56550932	-	ZMO0036	-	hypothetical protein
37	 49.35	0	38962..39423	-	153	56550933	nagE	ZMO0037	-	PTS system mannose/fructose-specific component IIA
38	 48.76	0	39624..40226	-	200	56550934	-	ZMO0038	-	ribosome-associated protein Y
39	 51.06	0	40339..41043	-	234	56550935	dnaQ	ZMO0039	-	DNA polymerase III epsilon subunit
40	 50.00	0	41051..41644	-	197	56550936	coaE	ZMO0040	-	dephospho-CoA kinase
41	 54.02	+1	41657..42439	-	260	56550937	aroE	ZMO0041	-	shikimate 5-dehydrogenase
42	 55.83	+1	42449..42568	+	39	56550938	-	ZMO0042	-	hypothetical protein
43	 50.25	0	42535..43131	-	198	56550939	-	ZMO0043	-	nucleotide-binding protein
44	 46.36	0	43595..45352	+	585	56550940	-	ZMO0044	-	hypothetical protein
45	 52.67	+1	45391..45540	-	49	56550941	-	ZMO0045	-	hypothetical protein
46	 46.80	0	45399..45836	-	145	56550943	-	ZMO0047	-	hypothetical protein
47	 48.21	0	45925..46092	+	55	56550942	-	ZMO0046	-	hypothetical protein
48	 45.76	0	45931..46107	-	58	56550944	-	ZMO0048	-	hypothetical protein
49	 41.54	0	45956..46150	+	64	56550945	-	ZMO0049	-	hypothetical protein
50	 49.67	0	46172..47083	+	303	56550946	-	ZMO0050	-	LysR family transcriptional regulator
51	 42.28	0	47080..47202	+	40	56550947	-	ZMO0051	-	hypothetical protein
52	 50.43	0	47275..48426	-	383	56550948	igiE	ZMO0052	-	cyanate permease
53	 49.44	0	48423..49229	-	268	56550949	pcaD	ZMO0053	-	putative beta-ketoadipate enol-lactone hydrolase
54	 47.84	0	49349..49858	+	169	56550950	-	ZMO0054	-	MarR family transcriptional regulator
55	 52.15	+1	49995..50786	-	263	56550951	-	ZMO0055	-	permease
56	 51.54	0	50970..52793	-	607	56550952	glmS	ZMO0056	-	D-fructose-6-phosphate amidotransferase
57	 41.35	0	52879..53439	-	186	56550953	-	ZMO0057	-	hypothetical protein
58	 39.22	-1	53444..53647	+	67	56550954	-	ZMO0058	-	hypothetical protein
59	 50.39	0	53616..54764	+	382	56550955	glxK	ZMO0059	-	glycerate kinase
60	 43.56	0	54812..55114	-	100	56550956	-	ZMO0060	-	hypothetical protein
61	 49.69	0	55124..56425	-	433	56550957	phyM	ZMO0061	-	phytase
62	 49.43	0	56562..57530	-	322	56550958	-	ZMO0062	-	hypothetical protein
63	 34.85	-2	57575..57706	+	43	56550959	-	ZMO0063	-	hypothetical protein
64	 48.95	0	57797..59455	-	552	56550960	oprB	ZMO0064	-	carbohydrate-selective porin
65	 23.53	-2	59429..59530	+	33	56550961	-	ZMO0065	-	hypothetical protein
66	 32.59	-2	59628..59897	+	89	56550962	-	ZMO0066	-	hypothetical protein
67	 26.47	-2	59966..60067	+	33	56550963	-	ZMO0067	-	hypothetical protein
68	 48.23	0	60238..61365	+	375	56550964	-	ZMO0068	-	hypothetical protein
69	 44.98	0	61631..62068	+	145	56550965	-	ZMO0069	-	hypothetical protein
70	 46.43	0	62194..62865	+	223	56550966	grxB	ZMO0070	-	glutaredoxin 2
71	 45.65	0	62917..63054	-	45	56550967	-	ZMO0071	-	hypothetical protein
72	 50.73	0	63126..64487	-	453	56550968	-	ZMO0072	-	glucose/sorbosone dehydrogenase
73	 51.75	+1	64496..65380	-	294	56550969	-	ZMO0073	-	hemolysin
74	 45.20	0	65435..65965	-	176	56550970	-	ZMO0074	-	metal-dependent hydrolase
75	 52.31	+1	65952..67031	-	359	56550971	phoH	ZMO0075	-	phosphate starvation-inducible protein
76	 52.90	+1	67009..67146	-	45	56550972	-	ZMO0076	-	hypothetical protein
77	 52.32	+1	67152..68489	-	445	56550973	-	ZMO0077	-	2-methylthioadenine synthetase
78	 52.94	+1	68587..69096	-	169	56550974	cheW	ZMO0078	-	chemotaxis protein
79	 48.91	0	69267..69632	-	121	56550975	cheY	ZMO0079	-	chemotaxis protein
80	 48.79	0	69777..70313	-	178	56550976	cheD	ZMO0080	-	chemotaxis protein
81	 52.50	+1	70350..71408	-	352	56550977	cheB	ZMO0081	-	chemotaxis-specific methylesterase
82	 47.77	0	71405..72277	-	290	56550978	cheR	ZMO0082	-	chemotaxis methyltransferase
83	 51.52	0	72274..74604	-	776	56550979	cheA	ZMO0083	-	chemotaxis protein
84	 48.52	0	74615..74884	-	89	56550980	-	ZMO0084	-	hypothetical protein
85	 48.55	0	75058..76371	-	437	56550981	mcpJ	ZMO0085	-	chemotaxis methyl-accepting protein
86	 49.54	0	76804..78969	-	721	56550982	-	ZMO0086	-	guanosine polyphosphate pyrophosphohydrolase
87	 44.93	0	79112..79594	-	160	56550983	-	ZMO0087	-	hypothetical protein
88	 42.13	0	79720..80424	-	234	56550984	-	ZMO0088	-	hypothetical protein
89	 42.28	0	80633..81325	-	230	56550985	-	ZMO0089	-	hypothetical protein
90	 50.75	0	81762..82559	-	265	56550986	-	ZMO0090	-	dehydrogenase
91	 39.74	-1	82626..82781	+	51	56550987	-	ZMO0091	-	hypothetical protein
92	 40.65	-1	82882..83646	+	254	56550988	-	ZMO0092	-	hypothetical protein
93	 46.27	0	83741..83941	+	66	56550989	-	ZMO0093	-	hypothetical protein
94	 50.95	0	83922..84869	+	315	56550990	bioB	ZMO0094	-	biotin synthase
95	 41.44	0	84952..85173	-	73	56550991	-	ZMO0095	-	hypothetical protein
96	 49.28	0	85619..86170	-	183	56550992	pgsA	ZMO0096	-	phosphatidylglycerophosphate synthase
97	 47.62	0	86169..86315	+	48	56550993	-	ZMO0097	-	hypothetical protein
98	 42.51	0	86443..86649	+	68	56550994	-	ZMO0098	-	hypothetical protein
99	 47.75	0	86672..87940	+	422	56550995	plsC	ZMO0099	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
100	 45.93	0	88005..88385	-	126	56550996	-	ZMO0100	-	hypothetical protein
101	 45.63	0	88492..89556	+	354	56550997	-	ZMO0101	-	nucleoside-diphosphate-sugar epimerase
102	 39.13	-1	89568..89774	+	68	56550998	-	ZMO0102	-	hypothetical protein
103	 49.96	0	90130..91548	+	472	56550999	-	ZMO0103	-	hypothetical protein
104	 42.98	0	91568..91681	+	37	56551000	-	ZMO0104	-	hypothetical protein
105	 53.88	+1	91653..93107	+	484	56551001	leuC	ZMO0105	-	isopropylmalate isomerase large subunit
106	 46.29	0	93104..93682	+	192	56551002	leuD	ZMO0106	-	3-isopropylmalate dehydratase small subunit
107	 48.02	0	93747..94556	-	269	56551003	-	ZMO0107	-	hypothetical protein
108	 49.85	0	94614..94940	-	108	56551004	-	ZMO0108	-	cation transporter
109	 37.43	-1	95278..96717	+	479	56551005	-	ZMO0109	-	hypothetical protein
110	 39.90	-1	96714..97703	+	329	56551006	-	ZMO0110	-	hypothetical protein
111	 50.70	0	97850..99646	-	598	56551007	-	ZMO0111	-	ABC transporter
112	 45.83	0	99833..100192	+	119	56551008	-	ZMO0112	-	hypothetical protein
113	 45.56	0	100982..102388	+	468	56551009	pabB	ZMO0113	-	para-aminobenzoate synthase component I
114	 46.57	0	102405..103016	+	203	56551010	trpGD	ZMO0114	-	anthranilate synthase component II
115	 47.79	0	102961..103818	+	285	56551011	pabC	ZMO0115	-	branched-chain amino acid aminotransferase
116	 48.86	0	104018..104455	+	145	56551012	-	ZMO0116	-	hypothetical protein
117	 49.33	0	104522..106159	+	545	56551013	hcp	ZMO0117	-	hydroxylamine reductase
118	 41.30	0	106299..106436	+	45	56551014	-	ZMO0118	-	hypothetical protein
119	 44.57	0	106417..107484	+	355	56551015	nhaA	ZMO0119	-	Na+/H+ antiporter
120	 47.72	0	107594..108712	+	372	56551016	-	ZMO0120	-	hypothetical protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.