IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
585	 49.23	0	586067..587293	-	408	56551481	trpB	ZMO0585	-	tryptophan synthase subunit beta
586	 49.21	0	587290..587925	-	211	56551482	trpF	ZMO0586	-	N-(5'-phosphoribosyl)anthranilate isomerase
587	 51.05	0	588038..588748	-	236	56551483	pyrF	ZMO0587	-	orotidine-5'-phosphate decarboxylase
588	 44.44	0	588762..589076	-	104	56551484	-	ZMO0588	-	hypothetical protein
589	 49.71	0	589166..590533	+	455	56551485	radA	ZMO0589	-	DNA repair protein RadA
590	 44.08	0	590533..591258	+	241	56551486	-	ZMO0590	-	uncharacterized membrane protein
591	 47.33	0	591473..591922	+	149	56551487	-	ZMO0591	-	Fe-S cluster formation protein
592	 47.73	0	591952..592326	+	124	56551488	-	ZMO0592	-	hypothetical protein
593	 46.93	0	592369..593508	-	379	56551489	aroB	ZMO0593	-	3-dehydroquinate synthase
594	 48.21	0	593505..594035	-	176	56551490	aroK	ZMO0594	-	shikimate kinase
595	 42.00	0	594116..594265	+	49	56551491	-	ZMO0595	-	hypothetical protein
596	 41.51	0	594152..594310	-	52	56551492	-	ZMO0596	-	hypothetical protein
597	 47.53	0	594369..596009	+	546	56551493	-	ZMO0597	-	hypothetical protein
598	 46.54	0	596051..596974	+	307	56551494	xerD	ZMO0598	-	integrase
599	 49.79	0	596985..597926	+	313	56551495	accA	ZMO0599	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
600	 31.58	-2	598030..598200	-	56	56551496	-	ZMO0600	-	hypothetical protein
601	 43.97	0	598187..600622	+	811	56551497	-	ZMO0601	-	two-component response regulator
602	 47.91	0	601676..602656	-	326	56551498	motB	ZMO0602	-	flagellar motor component
603	 46.30	0	602708..603571	-	287	56551499	motA	ZMO0603	-	flagellar motor protein MotA
604	 43.71	0	603774..604631	-	285	56551500	flgL	ZMO0604	-	flagellar hook-associated protein 3
605	 48.08	0	604646..606022	-	458	56551501	flgK	ZMO0605	-	flagellar hook-associated protein 1
606	 48.60	0	606183..606575	-	130	56551502	-	ZMO0606	-	peptidoglycan hydrolase
607	 50.87	0	606572..607723	-	383	56551503	flgI	ZMO0607	-	flagellar basal body P-ring protein
608	 49.63	0	607738..608412	-	224	56551504	flgH	ZMO0608	-	flagellar L-ring protein precursor
609	 47.98	0	608426..609217	-	263	56551505	flgG	ZMO0609	-	flagellar basal body rod protein FlgG
610	 51.60	0	609270..610019	-	249	56551506	flgF	ZMO0610	-	flagellar basal-body rod protein
611	 46.84	0	610059..611294	-	411	56551507	flgE	ZMO0611	-	flagellar hook protein
612	 49.35	0	611335..612027	-	230	56551508	flgD	ZMO0612	-	flagellar scaffolding protein
613	 50.12	0	612089..612493	-	134	56551509	flgC	ZMO0613	-	flagellar cell-proximal portion protein
614	 46.33	0	612502..612855	-	117	56551510	flgB	ZMO0614	-	flagellar proximal rod protein
615	 42.65	0	612887..613090	+	67	56551511	-	ZMO0615	-	hypothetical protein
616	 49.28	0	613068..613763	+	231	56551512	motA	ZMO0616	-	flagellar motor component
617	 45.05	0	613820..614425	+	201	56551513	motB	ZMO0617	-	flagellar chemotaxis protein
618	 40.88	-1	614621..614779	+	52	56551514	-	ZMO0618	-	hypothetical protein
619	 45.68	0	614991..615557	+	188	56551515	flgA	ZMO0619	-	flagellar protein
620	 48.04	0	615621..615926	-	101	56551516	-	ZMO0620	-	hypothetical protein
621	 48.51	0	615649..616083	+	144	56551517	-	ZMO0621	-	platelet binding protein
622	 48.43	0	616076..616393	+	105	56551518	-	ZMO0622	-	hypothetical protein
623	 34.04	-2	616667..616807	+	46	56551519	-	ZMO0623	-	hypothetical protein
624	 48.63	0	616807..618930	+	707	56551520	flhA	ZMO0624	-	flagellar biosynthesis protein FlhA
625	 47.69	0	618931..619752	+	273	56551521	fleN	ZMO0625	-	flagellar synthesis regulator
626	 47.04	0	619742..620485	+	247	56551522	fliA	ZMO0626	-	flagellar-specific RNA polymerase sigma factor
627	 41.63	0	620618..621304	+	228	56551523	-	ZMO0627	-	hypothetical protein
628	 38.12	-1	621363..621989	+	208	56551524	-	ZMO0628	-	hypothetical protein
629	 48.77	0	622080..622934	-	284	56551525	fliC	ZMO0629	-	flagellin
630	 50.26	0	623618..624001	+	127	56551526	-	ZMO0630	-	hypothetical protein
631	 51.16	0	624040..624942	+	300	56551527	-	ZMO0631	-	two-component response regulator
632	 48.54	0	625049..625390	+	113	56551528	fliE	ZMO0632	-	flagellar hook-basal body complex protein
633	 52.78	+1	625394..627049	+	551	56551529	fliF	ZMO0633	-	flagellar M-ring protein
634	 51.77	+1	627114..627254	+	46	56551530	-	ZMO0634	-	hypothetical protein
635	 49.08	0	627247..628281	+	344	56551531	fliG	ZMO0635	-	flagellar motor switch protein
636	 45.05	0	628268..629035	+	255	56551532	-	ZMO0636	-	flagellar biosynthetic protein
637	 49.11	0	629032..629925	+	297	56551533	fliI	ZMO0637	-	flagellum-specific ATP synthase
638	 46.48	0	630361..630786	+	141	56551534	-	ZMO0638	-	hypothetical protein
639	 41.89	0	630783..631331	+	182	56551535	-	ZMO0639	-	hypothetical protein
640	 42.08	0	631386..632666	+	426	56551536	-	ZMO0640	-	hypothetical protein
641	 44.44	0	632782..633186	+	134	56551537	motD	ZMO0641	-	chemotaxis protein
642	 39.82	-1	633199..633768	+	189	56551538	-	ZMO0642	-	hypothetical protein
643	 46.95	0	633765..634763	+	332	56551539	fliM	ZMO0643	-	flagellar switch protein
644	 40.71	-1	634760..635071	+	103	56551540	fliN	ZMO0644	-	flagellar motor switch
645	 40.61	-1	635064..635228	+	54	56551541	-	ZMO0645	-	hypothetical protein
646	 37.38	-1	635068..635388	+	106	56551542	fliO	ZMO0646	-	flagellar protein
647	 42.27	0	635393..636343	+	316	56551543	fliP	ZMO0647	-	flagellar biosynthesis protein FliP
648	 41.30	0	636340..636615	+	91	56551544	fliQ	ZMO0648	-	flagellar biosynthetic protein
649	 43.36	0	636629..637426	+	265	56551545	fliR	ZMO0649	-	flagellar biosynthetic protein
650	 41.99	0	637416..638558	+	380	56551546	flhB	ZMO0650	-	flagellar biosynthesis protein FlhB
651	 44.07	0	638660..640354	+	564	56551547	fliD	ZMO0651	-	flagellar hook-associated protein 2
652	 42.56	0	640395..640784	+	129	56551548	fliS	ZMO0652	-	flagellar protein
653	 42.76	0	640877..641947	-	356	56551549	-	ZMO0653	-	permease
654	 43.92	0	641996..645376	-	1126	56551550	-	ZMO0654	-	glycosyltransferase
655	 43.96	0	645528..647108	+	526	56551551	add	ZMO0655	-	adenosine deaminase
656	 44.06	0	647236..647757	-	173	56551552	gpt	ZMO0656	-	putative purine phosphoribosyltransferase
657	 45.29	0	647835..648863	-	342	56551553	aruG	ZMO0657	-	arginine/ornithine N-succinyltransferase beta subunit
658	 45.89	0	648860..650014	-	384	56551554	-	ZMO0658	-	hypothetical protein
659	 46.15	0	650527..651072	+	181	56551555	-	ZMO0659	-	hypothetical protein
660	 47.85	0	651304..653211	+	635	56551556	dnaK	ZMO0660	-	DnaK molecular chaperone
661	 50.18	0	653331..654458	+	375	56551557	dnaJ	ZMO0661	-	DnaJ molecular chaperone
662	 47.61	0	654569..655864	-	431	56551558	purB	ZMO0662	-	adenylosuccinate lyase
663	 47.51	0	656004..656687	-	227	56551559	radC	ZMO0663	-	DNA repair protein
664	 43.52	0	656842..659982	+	1046	56551560	-	ZMO0664	-	exoproteins
665	 44.78	0	660037..660237	+	66	56551561	-	ZMO0665	-	hypothetical protein
666	 48.62	0	660234..660632	+	132	56551562	-	ZMO0666	-	hypothetical protein
667	 48.19	0	661242..662042	+	266	56551563	atpB	ZMO0667	-	F0F1 ATP synthase subunit A
668	 55.00	+1	662078..662317	+	79	56551564	atpE	ZMO0668	-	ATP synthase C chain
669	 48.90	0	662439..662939	+	166	56551565	atpG	ZMO0669	-	ATP synthase B chain
670	 53.49	+1	662953..663210	+	85	56551566	-	ZMO0670	-	hypothetical protein
671	 47.99	0	663245..663592	+	115	56551567	atpF	ZMO0671	-	ATP synthase subunit b
672	 43.21	0	663747..665741	+	664	56551568	uvrC	ZMO0672	-	excinuclease ABC subunit C
673	 42.82	0	665783..666541	+	252	56551569	recO	ZMO0673	-	DNA repair protein RecO
674	 46.10	0	666579..667103	+	174	56551570	-	ZMO0674	-	hypothetical protein
675	 46.05	0	667104..667913	-	269	56551571	-	ZMO0675	-	LysR family transcriptional regulator
676	 48.97	0	667980..669188	-	402	56551572	-	ZMO0676	-	cystathionine beta-lyase
677	 48.10	0	669255..670304	-	349	56551573	leuB	ZMO0677	-	3-isopropylmalate dehydrogenase
678	 46.15	0	670437..671060	-	207	56551574	tdsD	ZMO0678	-	nitroreductase
679	 23.53	-2	671150..671251	+	33	56551575	-	ZMO0679	-	hypothetical protein
680	 44.03	0	671414..672451	+	345	56551576	-	ZMO0680	-	hypothetical protein
681	 43.72	0	672448..674391	+	647	56551577	-	ZMO0681	-	hypothetical protein
682	 42.05	0	675915..677234	+	439	56551578	-	ZMO0682	-	hypothetical protein
683	 40.75	-1	677276..678259	+	327	56551579	-	ZMO0683	-	hypothetical protein
684	 43.13	0	678308..679348	+	346	56551580	-	ZMO0684	-	hypothetical protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.