IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
533	 53.99	+1	526184..526885	+	233	56551429	rpsE	ZMO0533	-	30S ribosomal protein S5
534	 48.59	0	526893..527069	+	58	56551430	rpmD	ZMO0534	-	50S ribosomal protein L30
535	 39.58	-1	527053..527196	-	47	56551431	-	ZMO0535	-	hypothetical protein
536	 47.97	0	527220..527711	+	163	56551432	rplO	ZMO0536	-	50S ribosomal protein L15
537	 45.64	0	527997..529385	+	462	56551433	secY	ZMO0537	-	preprotein translocase subunit SecY
538	 46.73	0	529418..530089	+	223	56551434	adk	ZMO0538	-	adenylate kinase
539	 50.14	0	530424..530792	+	122	161611321	rpsM	ZMO0539	-	30S ribosomal protein S13
540	 51.54	0	530857..531246	+	129	56551436	rpsK	ZMO0540	-	30S ribosomal protein S11
541	 48.12	0	531339..532400	+	353	56551437	rpoA	ZMO0541	-	DNA-directed RNA polymerase subunit alpha
542	 50.12	0	532520..532942	+	140	56551438	rplQ	ZMO0542	-	50S ribosomal protein L17
543	 44.78	0	533710..535980	+	756	56551439	acnA	ZMO0543	-	aconitate hydratase
544	 45.92	0	536046..537308	+	420	56551440	citC	ZMO0544	-	isocitrate dehydrogenase
545	 45.66	0	537417..538211	-	264	56551441	trpC	ZMO0545	-	indole-3-glycerol-phosphate synthase
546	 46.43	0	538609..540051	+	480	56551442	-	ZMO0546	-	sulfate permease
547	 45.68	0	540556..542070	-	504	56551443	-	ZMO0547	-	hypothetical protein
548	 43.39	0	542213..543226	-	337	56551444	-	ZMO0548	-	two-component signal transduction histidine kinase
549	 51.13	0	543379..545625	-	748	56551445	pnp	ZMO0549	-	polynucleotide phosphorylase/polyadenylase
550	 47.78	0	545739..546008	-	89	56551446	rpsO	ZMO0550	-	ribosomal protein S15P
551	 49.45	0	546026..546937	-	303	56551447	rulB	ZMO0551	-	tRNA pseudouridine synthase B
552	 42.44	0	546934..547515	-	193	56551448	tdk	ZMO0552	-	thymidine kinase
553	 46.24	0	547539..547964	-	141	56551449	rbfA	ZMO0553	-	ribosome-binding factor A
554	 52.86	+1	548111..551080	-	989	56551450	infB	ZMO0554	-	translation initiation factor IF-2
555	 49.12	0	551084..551818	-	244	56551451	-	ZMO0555	-	transcription terminating nucleic-acid-binding protein
556	 49.20	0	551885..553510	-	541	56551452	nusA	ZMO0556	-	transcription elongation factor NusA
557	 49.01	0	553507..554061	-	184	56551453	-	ZMO0557	-	hypothetical protein
558	 46.95	0	554462..555790	+	442	56551454	-	ZMO0558	-	dehydrogenase
559	 48.19	0	555866..556693	+	275	56551455	-	ZMO0559	-	ATPase
560	 45.43	0	556860..558008	+	382	56551456	hisC	ZMO0560	-	putative aminotransferase
561	 42.04	0	559101..560558	-	485	56551457	-	ZMO0561	-	TonB-dependent receptor
562	 44.04	0	560726..561883	+	385	56551458	hisC	ZMO0562	-	putative aminotransferase
563	 45.21	0	562026..562328	-	100	56551459	aroH	ZMO0563	-	chorismate mutase
564	 49.21	0	562444..563457	+	337	56551460	ispB	ZMO0564	-	geranylgeranyl pyrophosphate synthase
565	 48.61	0	563499..566012	+	837	56551461	hrpB	ZMO0565	-	ATP-dependent helicases
566	 44.66	0	566205..567458	-	417	56551462	-	ZMO0566	-	MFS permease
567	 49.62	0	567679..568605	-	308	56551463	sucD	ZMO0567	-	succinyl-CoA synthetase alpha subunit
568	 41.93	0	568662..569045	-	127	56551464	sdhD	ZMO0568	-	succinate dehydrogenase anchor subunit
569	 42.72	0	569048..569473	-	141	56551465	sdhC	ZMO0569	-	succinate dehydrogenase
570	 49.79	0	569630..570577	+	315	56551466	prmA	ZMO0570	-	ribosomal protein L11 methylase
571	 46.72	0	571449..573218	+	589	56551467	-	ZMO0571	-	ABC-type anion transport system
572	 46.89	0	573245..574564	+	439	56551468	-	ZMO0572	-	ABC-type nitrate/sulfonate/bicarbonate transport system
573	 42.75	0	574746..575393	+	215	56551469	grxB	ZMO0573	-	glutaredoxin 2
574	 46.51	0	575446..577752	-	768	56551470	-	ZMO0574	-	DNA and RNA helicase
575	 51.45	0	577816..578367	-	183	56551471	mboA	ZMO0575	-	N6-adenine-specific methylase
576	 47.62	0	578997..579395	-	132	56551472	-	ZMO0576	-	pseudouridylate synthase
577	 46.57	0	579778..579981	+	67	56551473	-	ZMO0577	-	hypothetical protein
578	 46.37	0	580056..581336	-	426	56551474	-	ZMO0578	-	Na+/H+-dicarboxylate symporter
579	 27.87	-2	581479..581661	+	60	56551475	-	ZMO0579	-	hypothetical protein
580	 33.95	-2	581538..581699	-	53	56551476	-	ZMO0580	-	hypothetical protein
581	 45.98	0	581710..583014	+	434	56551477	-	ZMO0581	-	MFS permease
582	 50.08	0	583035..584366	-	443	56551478	folC	ZMO0582	-	putative folylpolyglutamate/dihydrofolate synthase
583	 49.47	0	584395..585249	-	284	56551479	accD	ZMO0583	-	acetyl-CoA carboxylase beta subunit
584	 50.42	0	585246..586070	-	274	56551480	trpA	ZMO0584	-	tryptophan synthase subunit alpha
585	 49.23	0	586067..587293	-	408	56551481	trpB	ZMO0585	-	tryptophan synthase subunit beta
586	 49.21	0	587290..587925	-	211	56551482	trpF	ZMO0586	-	N-(5'-phosphoribosyl)anthranilate isomerase
587	 51.05	0	588038..588748	-	236	56551483	pyrF	ZMO0587	-	orotidine-5'-phosphate decarboxylase
588	 44.44	0	588762..589076	-	104	56551484	-	ZMO0588	-	hypothetical protein
589	 49.71	0	589166..590533	+	455	56551485	radA	ZMO0589	-	DNA repair protein RadA
590	 44.08	0	590533..591258	+	241	56551486	-	ZMO0590	-	uncharacterized membrane protein
591	 47.33	0	591473..591922	+	149	56551487	-	ZMO0591	-	Fe-S cluster formation protein
592	 47.73	0	591952..592326	+	124	56551488	-	ZMO0592	-	hypothetical protein
593	 46.93	0	592369..593508	-	379	56551489	aroB	ZMO0593	-	3-dehydroquinate synthase
594	 48.21	0	593505..594035	-	176	56551490	aroK	ZMO0594	-	shikimate kinase
595	 42.00	0	594116..594265	+	49	56551491	-	ZMO0595	-	hypothetical protein
596	 41.51	0	594152..594310	-	52	56551492	-	ZMO0596	-	hypothetical protein
597	 47.53	0	594369..596009	+	546	56551493	-	ZMO0597	-	hypothetical protein
598	 46.54	0	596051..596974	+	307	56551494	xerD	ZMO0598	-	integrase
599	 49.79	0	596985..597926	+	313	56551495	accA	ZMO0599	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
600	 31.58	-2	598030..598200	-	56	56551496	-	ZMO0600	-	hypothetical protein
601	 43.97	0	598187..600622	+	811	56551497	-	ZMO0601	-	two-component response regulator
602	 47.91	0	601676..602656	-	326	56551498	motB	ZMO0602	-	flagellar motor component
603	 46.30	0	602708..603571	-	287	56551499	motA	ZMO0603	-	flagellar motor protein MotA
604	 43.71	0	603774..604631	-	285	56551500	flgL	ZMO0604	-	flagellar hook-associated protein 3
605	 48.08	0	604646..606022	-	458	56551501	flgK	ZMO0605	-	flagellar hook-associated protein 1
606	 48.60	0	606183..606575	-	130	56551502	-	ZMO0606	-	peptidoglycan hydrolase
607	 50.87	0	606572..607723	-	383	56551503	flgI	ZMO0607	-	flagellar basal body P-ring protein
608	 49.63	0	607738..608412	-	224	56551504	flgH	ZMO0608	-	flagellar L-ring protein precursor
609	 47.98	0	608426..609217	-	263	56551505	flgG	ZMO0609	-	flagellar basal body rod protein FlgG
610	 51.60	0	609270..610019	-	249	56551506	flgF	ZMO0610	-	flagellar basal-body rod protein
611	 46.84	0	610059..611294	-	411	56551507	flgE	ZMO0611	-	flagellar hook protein
612	 49.35	0	611335..612027	-	230	56551508	flgD	ZMO0612	-	flagellar scaffolding protein
613	 50.12	0	612089..612493	-	134	56551509	flgC	ZMO0613	-	flagellar cell-proximal portion protein
614	 46.33	0	612502..612855	-	117	56551510	flgB	ZMO0614	-	flagellar proximal rod protein
615	 42.65	0	612887..613090	+	67	56551511	-	ZMO0615	-	hypothetical protein
616	 49.28	0	613068..613763	+	231	56551512	motA	ZMO0616	-	flagellar motor component
617	 45.05	0	613820..614425	+	201	56551513	motB	ZMO0617	-	flagellar chemotaxis protein
618	 40.88	-1	614621..614779	+	52	56551514	-	ZMO0618	-	hypothetical protein
619	 45.68	0	614991..615557	+	188	56551515	flgA	ZMO0619	-	flagellar protein
620	 48.04	0	615621..615926	-	101	56551516	-	ZMO0620	-	hypothetical protein
621	 48.51	0	615649..616083	+	144	56551517	-	ZMO0621	-	platelet binding protein
622	 48.43	0	616076..616393	+	105	56551518	-	ZMO0622	-	hypothetical protein
623	 34.04	-2	616667..616807	+	46	56551519	-	ZMO0623	-	hypothetical protein
624	 48.63	0	616807..618930	+	707	56551520	flhA	ZMO0624	-	flagellar biosynthesis protein FlhA
625	 47.69	0	618931..619752	+	273	56551521	fleN	ZMO0625	-	flagellar synthesis regulator
626	 47.04	0	619742..620485	+	247	56551522	fliA	ZMO0626	-	flagellar-specific RNA polymerase sigma factor
627	 41.63	0	620618..621304	+	228	56551523	-	ZMO0627	-	hypothetical protein
628	 38.12	-1	621363..621989	+	208	56551524	-	ZMO0628	-	hypothetical protein
629	 48.77	0	622080..622934	-	284	56551525	fliC	ZMO0629	-	flagellin
630	 50.26	0	623618..624001	+	127	56551526	-	ZMO0630	-	hypothetical protein
631	 51.16	0	624040..624942	+	300	56551527	-	ZMO0631	-	two-component response regulator
632	 48.54	0	625049..625390	+	113	56551528	fliE	ZMO0632	-	flagellar hook-basal body complex protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.