IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
474	 48.77	0	465046..466185	-	379	56551370	ribB	ZMO0474	-	GTP cyclohydrolase II
475	 48.47	0	466182..466802	-	206	56551371	ribC	ZMO0475	-	riboflavin synthase subunit alpha
476	 48.97	0	466891..467862	-	323	56551372	ribD	ZMO0476	-	riboflavin-specific deaminase/reductase
477	 41.31	0	467893..468243	-	116	56551373	-	ZMO0477	-	hypothetical protein
478	 45.00	0	468425..469144	+	239	56551374	-	ZMO0478	-	two-component response regulator
479	 43.75	0	469148..470500	+	450	56551375	-	ZMO0479	-	peptidoglycan binding domain-containing protein
480	 42.84	0	470493..472784	+	763	56551376	-	ZMO0480	-	two-component signal transduction histidine kinase
481	 43.99	0	472747..473328	-	193	56551377	-	ZMO0481	-	hypothetical protein
482	 48.15	0	473340..474338	-	332	56551378	glpX	ZMO0482	-	fructose 1,6-bisphosphatase II
483	 47.25	0	474460..475752	-	430	56551379	hom	ZMO0483	-	homoserine dehydrogenase
484	 41.07	-1	475910..476620	+	236	56551380	-	ZMO0484	-	magnesium transporter
485	 48.52	0	476871..478049	+	392	56551381	-	ZMO0485	-	acyl-CoA dehydrogenase
486	 50.11	0	478113..478988	+	291	56551382	-	ZMO0486	-	hypothetical protein
487	 49.45	0	478981..479793	+	270	56551383	-	ZMO0487	-	citrate lyase beta chain
488	 44.18	0	479911..480915	-	334	56551384	-	ZMO0488	-	GTP binding protein
489	 33.33	-2	481247..481477	+	76	56551385	-	ZMO0489	-	hypothetical protein
490	 47.31	0	481484..483550	-	688	56551386	ptrB	ZMO0490	-	protease II
491	 48.78	0	483675..485474	+	599	56551387	pepP	ZMO0491	-	aminopeptidase P
492	 49.59	0	485584..485946	+	120	56551388	glnB	ZMO0492	-	nitrogen regulatory protein PII
493	 48.69	0	486040..487452	+	470	56551389	glnA	ZMO0493	-	glutamine synthetase
494	 45.24	0	487648..488898	+	416	56551390	-	ZMO0494	-	MFS permease
495	 44.86	0	488892..493169	-	1425	56551391	-	ZMO0495	-	hypothetical protein
496	 46.86	0	493169..495061	-	630	56551392	-	ZMO0496	-	hypothetical protein
497	 46.58	0	495241..495942	-	233	56551393	-	ZMO0497	-	phosphatase
498	 47.19	0	496114..497499	+	461	56551394	glmU	ZMO0498	-	N-acetylglucosamine-1-phosphate uridyltransferase
499	 50.73	0	497681..499789	-	702	56551395	pbpF	ZMO0499	-	membrane carboxypeptidase
500	 46.47	0	499820..501760	-	646	56551396	-	ZMO0500	-	hypothetical protein
501	 44.37	0	502012..502464	+	150	56551397	-	ZMO0501	-	hypothetical protein
502	 46.21	0	502476..504137	-	553	56551398	-	ZMO0502	-	hypothetical protein
503	 44.87	0	504300..505469	+	389	56551399	dpm1	ZMO0503	-	putative dolichol-phosphate mannosyltransferase
504	 40.69	-1	505352..505555	-	67	56551400	-	ZMO0504	-	hypothetical protein
505	 46.36	0	505576..506235	+	219	56551401	rluC	ZMO0505	-	pseudouridylate synthase
506	 41.19	0	506485..506904	-	139	56551402	rf-2	ZMO0506	-	hypothetical protein
507	 47.53	0	507018..507503	+	161	56551403	-	ZMO0507	-	GAF domain-containing protein
508	 42.13	0	507527..507958	+	143	56551404	-	ZMO0508	-	acetyltransferase
509	 49.31	0	508043..508762	+	239	56551405	-	ZMO0509	-	hypothetical protein
510	 46.56	0	509042..510364	+	440	56551406	pdhC	ZMO0510	-	pyruvate dehydrogenase E2 component
511	 49.33	0	510361..510810	+	149	56551407	-	ZMO0511	-	acyl-CoA hydrolase
512	 48.47	0	510856..512256	+	466	56551408	lpd	ZMO0512	-	dihydrolipoyl dehydrogenase
513	 47.88	0	512268..512975	+	235	56551409	-	ZMO0513	-	hypothetical protein
514	 49.68	0	513761..514231	+	156	56551410	rpsG	ZMO0514	-	30S ribosomal protein S7
515	 49.40	0	514290..516362	+	690	56551411	-	ZMO0515	-	elongation factor G
516	 51.01	0	516466..517659	+	397	56551412	-	ZMO0516	-	elongation factor Tu
517	 52.13	+1	518391..519119	+	242	56551413	rplC	ZMO0517	-	50S ribosomal protein L3
518	 50.48	0	519122..519745	+	207	56551414	rplD	ZMO0518	-	50S ribosomal protein L4
519	 48.72	0	519738..520049	+	103	56551415	rplW	ZMO0519	-	50S ribosomal protein L23
520	 52.57	+1	520054..520890	+	278	56551416	rplB	ZMO0520	-	50S ribosomal protein L2
521	 51.97	+1	521168..521548	+	126	56551417	rplV	ZMO0521	-	50S ribosomal protein L22
522	 51.72	0	521550..522245	+	231	56551418	rpsC	ZMO0522	-	30S ribosomal protein S3
523	 53.47	+1	522309..522740	+	143	56551419	rplP	ZMO0523	-	50S ribosomal protein L16
524	 53.92	+1	522743..522946	+	67	56551420	rpmC	ZMO0524	-	50S ribosomal protein L29
525	 46.03	0	522958..523209	+	83	56551421	rpsQ	ZMO0525	-	ribosomal protein S17
526	 51.92	+1	523337..523648	+	103	56551422	rplN	ZMO0526	-	ribosomal protein L14
527	 49.69	0	523648..523965	+	105	56551423	rplX	ZMO0527	-	50S ribosomal protein L24
528	 48.36	0	523958..524536	+	192	56551424	rplE	ZMO0528	-	50S ribosomal protein L5
529	 49.67	0	524580..524885	+	101	56551425	rpsN	ZMO0529	-	30S ribosomal protein S14
530	 51.77	+1	524899..525294	+	131	56551426	rpsH	ZMO0530	-	30S ribosomal protein S8
531	 48.88	0	525294..525827	+	177	56551427	rplF	ZMO0531	-	50S ribosomal protein L6
532	 50.98	0	525827..526183	+	118	56551428	rplR	ZMO0532	-	50S ribosomal protein L18
533	 53.99	+1	526184..526885	+	233	56551429	rpsE	ZMO0533	-	30S ribosomal protein S5
534	 48.59	0	526893..527069	+	58	56551430	rpmD	ZMO0534	-	50S ribosomal protein L30
535	 39.58	-1	527053..527196	-	47	56551431	-	ZMO0535	-	hypothetical protein
536	 47.97	0	527220..527711	+	163	56551432	rplO	ZMO0536	-	50S ribosomal protein L15
537	 45.64	0	527997..529385	+	462	56551433	secY	ZMO0537	-	preprotein translocase subunit SecY
538	 46.73	0	529418..530089	+	223	56551434	adk	ZMO0538	-	adenylate kinase
539	 50.14	0	530424..530792	+	122	161611321	rpsM	ZMO0539	-	30S ribosomal protein S13
540	 51.54	0	530857..531246	+	129	56551436	rpsK	ZMO0540	-	30S ribosomal protein S11
541	 48.12	0	531339..532400	+	353	56551437	rpoA	ZMO0541	-	DNA-directed RNA polymerase subunit alpha
542	 50.12	0	532520..532942	+	140	56551438	rplQ	ZMO0542	-	50S ribosomal protein L17
543	 44.78	0	533710..535980	+	756	56551439	acnA	ZMO0543	-	aconitate hydratase
544	 45.92	0	536046..537308	+	420	56551440	citC	ZMO0544	-	isocitrate dehydrogenase
545	 45.66	0	537417..538211	-	264	56551441	trpC	ZMO0545	-	indole-3-glycerol-phosphate synthase
546	 46.43	0	538609..540051	+	480	56551442	-	ZMO0546	-	sulfate permease
547	 45.68	0	540556..542070	-	504	56551443	-	ZMO0547	-	hypothetical protein
548	 43.39	0	542213..543226	-	337	56551444	-	ZMO0548	-	two-component signal transduction histidine kinase
549	 51.13	0	543379..545625	-	748	56551445	pnp	ZMO0549	-	polynucleotide phosphorylase/polyadenylase
550	 47.78	0	545739..546008	-	89	56551446	rpsO	ZMO0550	-	ribosomal protein S15P
551	 49.45	0	546026..546937	-	303	56551447	rulB	ZMO0551	-	tRNA pseudouridine synthase B
552	 42.44	0	546934..547515	-	193	56551448	tdk	ZMO0552	-	thymidine kinase
553	 46.24	0	547539..547964	-	141	56551449	rbfA	ZMO0553	-	ribosome-binding factor A
554	 52.86	+1	548111..551080	-	989	56551450	infB	ZMO0554	-	translation initiation factor IF-2
555	 49.12	0	551084..551818	-	244	56551451	-	ZMO0555	-	transcription terminating nucleic-acid-binding protein
556	 49.20	0	551885..553510	-	541	56551452	nusA	ZMO0556	-	transcription elongation factor NusA
557	 49.01	0	553507..554061	-	184	56551453	-	ZMO0557	-	hypothetical protein
558	 46.95	0	554462..555790	+	442	56551454	-	ZMO0558	-	dehydrogenase
559	 48.19	0	555866..556693	+	275	56551455	-	ZMO0559	-	ATPase
560	 45.43	0	556860..558008	+	382	56551456	hisC	ZMO0560	-	putative aminotransferase
561	 42.04	0	559101..560558	-	485	56551457	-	ZMO0561	-	TonB-dependent receptor
562	 44.04	0	560726..561883	+	385	56551458	hisC	ZMO0562	-	putative aminotransferase
563	 45.21	0	562026..562328	-	100	56551459	aroH	ZMO0563	-	chorismate mutase
564	 49.21	0	562444..563457	+	337	56551460	ispB	ZMO0564	-	geranylgeranyl pyrophosphate synthase
565	 48.61	0	563499..566012	+	837	56551461	hrpB	ZMO0565	-	ATP-dependent helicases
566	 44.66	0	566205..567458	-	417	56551462	-	ZMO0566	-	MFS permease
567	 49.62	0	567679..568605	-	308	56551463	sucD	ZMO0567	-	succinyl-CoA synthetase alpha subunit
568	 41.93	0	568662..569045	-	127	56551464	sdhD	ZMO0568	-	succinate dehydrogenase anchor subunit
569	 42.72	0	569048..569473	-	141	56551465	sdhC	ZMO0569	-	succinate dehydrogenase
570	 49.79	0	569630..570577	+	315	56551466	prmA	ZMO0570	-	ribosomal protein L11 methylase
571	 46.72	0	571449..573218	+	589	56551467	-	ZMO0571	-	ABC-type anion transport system
572	 46.89	0	573245..574564	+	439	56551468	-	ZMO0572	-	ABC-type nitrate/sulfonate/bicarbonate transport system
573	 42.75	0	574746..575393	+	215	56551469	grxB	ZMO0573	-	glutaredoxin 2
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.