IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
448	 48.84	0	443044..443733	-	229	56551344	-	ZMO0448	-	cell wall hydrolyses
449	 47.01	0	444524..445291	+	255	56551345	-	ZMO0449	-	hypothetical protein
450	 49.08	0	445314..446558	+	414	56551346	-	ZMO0450	-	hypothetical protein
451	 45.95	0	446537..446647	-	36	56551347	-	ZMO0451	-	hypothetical protein
452	 43.48	0	446661..446798	+	45	56551348	-	ZMO0452	-	hypothetical protein
453	 48.28	0	446865..448229	+	454	56551349	engA	ZMO0453	-	GTP-binding protein EngA
454	 49.77	0	449330..449968	-	212	56551350	fhs	ZMO0454	-	formate-tetrahydrofolate ligase
455	 39.64	-1	450154..450264	-	36	56551351	-	ZMO0455	-	hypothetical protein
456	 47.80	0	450398..450715	+	105	56551352	vanB	ZMO0456	-	vanillate O-demethylase oxidoreductase
457	 42.83	0	450841..451335	+	164	56551353	grp	ZMO0457	-	glutamate uptake regulatory protein
458	 46.35	0	451332..452030	-	232	56551354	-	ZMO0458	-	lipoprotein releasing system ATP-binding protein
459	 46.60	0	452023..453273	-	416	56551355	lolC	ZMO0459	-	ABC-type transport system
460	 48.94	0	453475..454602	-	375	56551356	proS	ZMO0460	-	prolyl-tRNA synthetase
461	 30.67	-2	454572..454721	-	49	56551357	-	ZMO0461	-	hypothetical protein
462	 46.97	0	455092..456726	-	544	56551358	pyrG	ZMO0462	-	CTP synthetase
463	 36.05	-1	456735..456881	+	48	56551359	-	ZMO0463	-	hypothetical protein
464	 52.21	+1	456865..457293	-	142	56551360	secG	ZMO0464	-	preprotein translocase subunit
465	 51.73	0	457473..458222	-	249	56551361	tpi	ZMO0465	-	triosephosphate isomerase
466	 30.95	-2	458279..458404	-	41	56551362	-	ZMO0466	-	hypothetical protein
467	 47.01	0	458508..460466	+	652	56551363	-	ZMO0467	-	peptidyl-prolyl isomerase
468	 48.03	0	460463..462013	+	516	56551364	trpE	ZMO0468	-	anthranilate synthase component I
469	 44.21	0	462052..462483	-	143	56551365	-	ZMO0469	-	hypothetical protein
470	 37.41	-1	462592..462738	-	48	56551366	-	ZMO0470	-	hypothetical protein
471	 48.75	0	462737..463696	+	319	56551367	-	ZMO0471	-	transcriptional regulator
472	 45.96	0	463735..464415	-	226	56551368	-	ZMO0472	-	hypothetical protein
473	 45.95	0	464625..465044	-	139	56551369	ribH	ZMO0473	-	riboflavin synthase beta-chain
474	 48.77	0	465046..466185	-	379	56551370	ribB	ZMO0474	-	GTP cyclohydrolase II
475	 48.47	0	466182..466802	-	206	56551371	ribC	ZMO0475	-	riboflavin synthase subunit alpha
476	 48.97	0	466891..467862	-	323	56551372	ribD	ZMO0476	-	riboflavin-specific deaminase/reductase
477	 41.31	0	467893..468243	-	116	56551373	-	ZMO0477	-	hypothetical protein
478	 45.00	0	468425..469144	+	239	56551374	-	ZMO0478	-	two-component response regulator
479	 43.75	0	469148..470500	+	450	56551375	-	ZMO0479	-	peptidoglycan binding domain-containing protein
480	 42.84	0	470493..472784	+	763	56551376	-	ZMO0480	-	two-component signal transduction histidine kinase
481	 43.99	0	472747..473328	-	193	56551377	-	ZMO0481	-	hypothetical protein
482	 48.15	0	473340..474338	-	332	56551378	glpX	ZMO0482	-	fructose 1,6-bisphosphatase II
483	 47.25	0	474460..475752	-	430	56551379	hom	ZMO0483	-	homoserine dehydrogenase
484	 41.07	-1	475910..476620	+	236	56551380	-	ZMO0484	-	magnesium transporter
485	 48.52	0	476871..478049	+	392	56551381	-	ZMO0485	-	acyl-CoA dehydrogenase
486	 50.11	0	478113..478988	+	291	56551382	-	ZMO0486	-	hypothetical protein
487	 49.45	0	478981..479793	+	270	56551383	-	ZMO0487	-	citrate lyase beta chain
488	 44.18	0	479911..480915	-	334	56551384	-	ZMO0488	-	GTP binding protein
489	 33.33	-2	481247..481477	+	76	56551385	-	ZMO0489	-	hypothetical protein
490	 47.31	0	481484..483550	-	688	56551386	ptrB	ZMO0490	-	protease II
491	 48.78	0	483675..485474	+	599	56551387	pepP	ZMO0491	-	aminopeptidase P
492	 49.59	0	485584..485946	+	120	56551388	glnB	ZMO0492	-	nitrogen regulatory protein PII
493	 48.69	0	486040..487452	+	470	56551389	glnA	ZMO0493	-	glutamine synthetase
494	 45.24	0	487648..488898	+	416	56551390	-	ZMO0494	-	MFS permease
495	 44.86	0	488892..493169	-	1425	56551391	-	ZMO0495	-	hypothetical protein
496	 46.86	0	493169..495061	-	630	56551392	-	ZMO0496	-	hypothetical protein
497	 46.58	0	495241..495942	-	233	56551393	-	ZMO0497	-	phosphatase
498	 47.19	0	496114..497499	+	461	56551394	glmU	ZMO0498	-	N-acetylglucosamine-1-phosphate uridyltransferase
499	 50.73	0	497681..499789	-	702	56551395	pbpF	ZMO0499	-	membrane carboxypeptidase
500	 46.47	0	499820..501760	-	646	56551396	-	ZMO0500	-	hypothetical protein
501	 44.37	0	502012..502464	+	150	56551397	-	ZMO0501	-	hypothetical protein
502	 46.21	0	502476..504137	-	553	56551398	-	ZMO0502	-	hypothetical protein
503	 44.87	0	504300..505469	+	389	56551399	dpm1	ZMO0503	-	putative dolichol-phosphate mannosyltransferase
504	 40.69	-1	505352..505555	-	67	56551400	-	ZMO0504	-	hypothetical protein
505	 46.36	0	505576..506235	+	219	56551401	rluC	ZMO0505	-	pseudouridylate synthase
506	 41.19	0	506485..506904	-	139	56551402	rf-2	ZMO0506	-	hypothetical protein
507	 47.53	0	507018..507503	+	161	56551403	-	ZMO0507	-	GAF domain-containing protein
508	 42.13	0	507527..507958	+	143	56551404	-	ZMO0508	-	acetyltransferase
509	 49.31	0	508043..508762	+	239	56551405	-	ZMO0509	-	hypothetical protein
510	 46.56	0	509042..510364	+	440	56551406	pdhC	ZMO0510	-	pyruvate dehydrogenase E2 component
511	 49.33	0	510361..510810	+	149	56551407	-	ZMO0511	-	acyl-CoA hydrolase
512	 48.47	0	510856..512256	+	466	56551408	lpd	ZMO0512	-	dihydrolipoyl dehydrogenase
513	 47.88	0	512268..512975	+	235	56551409	-	ZMO0513	-	hypothetical protein
514	 49.68	0	513761..514231	+	156	56551410	rpsG	ZMO0514	-	30S ribosomal protein S7
515	 49.40	0	514290..516362	+	690	56551411	-	ZMO0515	-	elongation factor G
516	 51.01	0	516466..517659	+	397	56551412	-	ZMO0516	-	elongation factor Tu
517	 52.13	+1	518391..519119	+	242	56551413	rplC	ZMO0517	-	50S ribosomal protein L3
518	 50.48	0	519122..519745	+	207	56551414	rplD	ZMO0518	-	50S ribosomal protein L4
519	 48.72	0	519738..520049	+	103	56551415	rplW	ZMO0519	-	50S ribosomal protein L23
520	 52.57	+1	520054..520890	+	278	56551416	rplB	ZMO0520	-	50S ribosomal protein L2
521	 51.97	+1	521168..521548	+	126	56551417	rplV	ZMO0521	-	50S ribosomal protein L22
522	 51.72	0	521550..522245	+	231	56551418	rpsC	ZMO0522	-	30S ribosomal protein S3
523	 53.47	+1	522309..522740	+	143	56551419	rplP	ZMO0523	-	50S ribosomal protein L16
524	 53.92	+1	522743..522946	+	67	56551420	rpmC	ZMO0524	-	50S ribosomal protein L29
525	 46.03	0	522958..523209	+	83	56551421	rpsQ	ZMO0525	-	ribosomal protein S17
526	 51.92	+1	523337..523648	+	103	56551422	rplN	ZMO0526	-	ribosomal protein L14
527	 49.69	0	523648..523965	+	105	56551423	rplX	ZMO0527	-	50S ribosomal protein L24
528	 48.36	0	523958..524536	+	192	56551424	rplE	ZMO0528	-	50S ribosomal protein L5
529	 49.67	0	524580..524885	+	101	56551425	rpsN	ZMO0529	-	30S ribosomal protein S14
530	 51.77	+1	524899..525294	+	131	56551426	rpsH	ZMO0530	-	30S ribosomal protein S8
531	 48.88	0	525294..525827	+	177	56551427	rplF	ZMO0531	-	50S ribosomal protein L6
532	 50.98	0	525827..526183	+	118	56551428	rplR	ZMO0532	-	50S ribosomal protein L18
533	 53.99	+1	526184..526885	+	233	56551429	rpsE	ZMO0533	-	30S ribosomal protein S5
534	 48.59	0	526893..527069	+	58	56551430	rpmD	ZMO0534	-	50S ribosomal protein L30
535	 39.58	-1	527053..527196	-	47	56551431	-	ZMO0535	-	hypothetical protein
536	 47.97	0	527220..527711	+	163	56551432	rplO	ZMO0536	-	50S ribosomal protein L15
537	 45.64	0	527997..529385	+	462	56551433	secY	ZMO0537	-	preprotein translocase subunit SecY
538	 46.73	0	529418..530089	+	223	56551434	adk	ZMO0538	-	adenylate kinase
539	 50.14	0	530424..530792	+	122	161611321	rpsM	ZMO0539	-	30S ribosomal protein S13
540	 51.54	0	530857..531246	+	129	56551436	rpsK	ZMO0540	-	30S ribosomal protein S11
541	 48.12	0	531339..532400	+	353	56551437	rpoA	ZMO0541	-	DNA-directed RNA polymerase subunit alpha
542	 50.12	0	532520..532942	+	140	56551438	rplQ	ZMO0542	-	50S ribosomal protein L17
543	 44.78	0	533710..535980	+	756	56551439	acnA	ZMO0543	-	aconitate hydratase
544	 45.92	0	536046..537308	+	420	56551440	citC	ZMO0544	-	isocitrate dehydrogenase
545	 45.66	0	537417..538211	-	264	56551441	trpC	ZMO0545	-	indole-3-glycerol-phosphate synthase
546	 46.43	0	538609..540051	+	480	56551442	-	ZMO0546	-	sulfate permease
547	 45.68	0	540556..542070	-	504	56551443	-	ZMO0547	-	hypothetical protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.