IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
371	 47.39	0	375138..375827	-	229	56551267	asr	ZMO0371	-	aspartate racemase
372	 39.18	-1	375999..376460	+	153	56551268	-	ZMO0372	-	global regulatory protein
373	 35.85	-1	376457..376813	-	118	56551269	-	ZMO0373	-	hypothetical protein
374	 47.64	0	377648..378919	+	423	56551270	sacB	ZMO0374	-	levansucrase
375	 47.10	0	379075..380316	+	413	56551271	sacC	ZMO0375	-	extracellular sucrase
376	 48.62	0	380607..383033	-	808	56551272	lon	ZMO0376	-	ATP-dependent Lon protease
377	 44.44	0	383220..383849	+	209	56551273	tag	ZMO0377	-	3-methyladenine DNA glycosylase
378	 46.94	0	383933..384439	+	168	56551274	-	ZMO0378	-	hypothetical protein
379	 49.57	0	384439..385725	+	428	56551275	-	ZMO0379	-	terminase
380	 47.63	0	385768..387957	+	729	56551276	-	ZMO0380	-	putative portal protein
381	 46.00	0	387957..388256	+	99	56551277	-	ZMO0381	-	hypothetical protein
382	 49.71	0	388306..388476	+	56	56551278	-	ZMO0382	-	hypothetical protein
383	 50.76	0	388445..389230	+	261	56551279	-	ZMO0383	-	hypothetical protein
384	 42.59	0	389256..389363	+	35	56551280	-	ZMO0384	-	hypothetical protein
385	 40.83	-1	389548..389667	+	39	56551281	-	ZMO0385	-	hypothetical protein
386	 48.33	0	389599..389718	-	39	56551282	-	ZMO0386	-	hypothetical protein
387	 53.84	+1	389894..390610	+	238	56551283	-	ZMO0387	-	major head protein
388	 46.67	0	390746..391090	+	114	56551284	-	ZMO0388	-	hypothetical protein
389	 50.15	0	391100..391759	+	219	56551285	-	ZMO0389	-	constituent protein
390	 49.44	0	391753..393174	+	473	56551286	-	ZMO0390	-	hypothetical protein
391	 50.36	0	393144..393419	+	91	56551287	-	ZMO0391	-	hypothetical protein
392	 48.61	0	393398..393901	+	167	56551288	-	ZMO0392	-	hypothetical protein
393	 46.88	0	393902..394573	+	223	56551289	-	ZMO0393	-	hypothetical protein
394	 46.37	0	394586..395260	+	224	56551290	-	ZMO0394	-	hypothetical protein
395	 49.00	0	395407..395757	-	116	56551292	-	ZMO0396	-	hypothetical protein
396	 49.86	0	395440..395808	+	122	56551291	-	ZMO0395	-	hypothetical protein
397	 48.77	0	395805..396251	+	148	56551293	-	ZMO0397	-	hypothetical protein
398	 48.12	0	396205..396657	+	150	56551294	-	ZMO0398	-	RTX toxin
399	 48.10	0	396662..397663	+	333	56551295	-	ZMO0399	-	neck appendage protein precursor
400	 47.95	0	397668..400322	+	884	56551296	-	ZMO0400	-	hypothetical protein
401	 39.42	-1	400332..402383	-	683	56551297	-	ZMO0401	-	signal transduction protein
402	 47.90	0	402603..403268	-	221	56551298	ftsJ	ZMO0402	-	23S rRNA methylase
403	 49.37	0	403265..404368	-	367	56551299	ppx	ZMO0403	-	exopolyphosphatase
404	 43.64	0	405047..405211	+	54	56551300	-	ZMO0404	-	hypothetical protein
405	 49.01	0	405319..407640	+	773	56551301	clpA	ZMO0405	-	ATPase
406	 46.35	0	407730..408551	-	273	56551302	-	ZMO0406	-	ABC-type multidrug transport system
407	 54.55	+1	408703..409395	+	230	56551303	-	ZMO0407	-	hypothetical protein
408	 48.39	0	409612..410820	+	402	56551304	argD	ZMO0408	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
409	 49.42	0	410842..411792	+	316	56551305	argF	ZMO0409	-	ornithine carbamoyltransferase
410	 45.67	0	411921..412844	+	307	56551306	hslO	ZMO0410	-	chaperone protein Hsp33
411	 48.66	0	412919..414901	+	660	56551307	gyrB	ZMO0411	-	DNA topoisomerase IV subunit B
412	 45.77	0	415097..415723	-	208	56551308	-	ZMO0412	-	multiple antibiotic transporter
413	 42.20	0	415912..416238	-	108	56551309	-	ZMO0413	-	hypothetical protein
414	 45.34	0	416262..417302	-	346	56551310	-	ZMO0414	-	hypothetical protein
415	 47.37	0	417299..417412	-	37	56551311	-	ZMO0415	-	hypothetical protein
416	 44.85	0	417463..418209	+	248	56551312	ftsE	ZMO0416	-	cell division involved ATPase
417	 43.55	0	418191..419081	+	296	56551313	ftsX	ZMO0417	-	cell division protein
418	 45.26	0	419113..419724	+	203	56551314	-	ZMO0418	-	hypothetical protein
419	 46.75	0	419773..420525	+	250	56551315	plsC	ZMO0419	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
420	 48.64	0	420574..421455	-	293	56551316	tyrC	ZMO0420	-	cyclohexadienyl dehydrogenase
421	 50.00	0	421456..422565	-	369	56551317	hisC	ZMO0421	-	histidinol-phosphate aminotransferase
422	 50.00	0	423132..423539	+	135	56551318	-	ZMO0422	-	transcriptional regulator
423	 46.50	0	423539..425011	+	490	56551319	-	ZMO0423	-	cysteine desulfurase activator complex subunit SufB
424	 45.33	0	425035..425184	+	49	56551320	-	ZMO0424	-	ABC transporter ATP-binding protein
425	 49.18	0	425168..425779	+	203	56551321	-	ZMO0425	-	ABC-type transport system
426	 48.57	0	425776..426891	+	371	56551322	-	ZMO0426	-	ABC-type transport system permease component
427	 48.53	0	426888..428111	+	407	56551323	csdB	ZMO0427	-	selenocysteine lyase
428	 47.36	0	428108..428542	+	144	56551324	-	ZMO0428	-	metal-sulfur cluster biosynthetic enzyme
429	 44.44	0	428581..428922	+	113	56551325	-	ZMO0429	-	hypothetical protein
430	 42.90	0	429047..429715	+	222	56551326	-	ZMO0430	-	hydrolase
431	 50.66	0	429749..430579	+	276	56551327	dapD	ZMO0431	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
432	 43.12	0	430647..431525	-	292	56551328	rocF	ZMO0432	-	arginase/agmatinase/formimionoglutamate hydrolase
433	 47.16	0	431867..432517	-	216	56551329	gmk	ZMO0433	-	guanylate kinase
434	 36.81	-1	432556..432699	-	47	56551330	-	ZMO0434	-	hypothetical protein
435	 58.09	+2	432671..433078	-	135	56551331	-	ZMO0435	-	hypothetical protein
436	 45.36	0	433243..433641	-	132	56551332	-	ZMO0436	-	hypothetical protein
437	 43.69	0	433799..434020	+	73	56551333	-	ZMO0437	-	hypothetical protein
438	 45.83	0	434159..434278	+	39	56551334	-	ZMO0438	-	hypothetical protein
439	 51.64	0	434275..435399	+	374	56551335	rluC	ZMO0439	-	pseudouridylate synthase
440	 44.33	0	435509..435799	+	96	56551336	-	ZMO0440	-	hypothetical protein
441	 45.82	0	435826..436530	+	234	56551337	-	ZMO0441	-	chaperone
442	 44.96	0	436559..437203	+	214	56551338	-	ZMO0442	-	putative phosphatase
443	 46.05	0	437287..438324	-	345	56551339	nrdF	ZMO0443	-	ribonucleotide-diphosphate reductase subunit beta
444	 48.62	0	438653..439699	+	348	56551340	-	ZMO0444	-	hypothetical protein
445	 50.70	0	439696..441261	+	521	56551341	-	ZMO0445	-	hypothetical protein
446	 45.98	0	441293..442699	+	468	56551342	algI	ZMO0446	-	putative alginate O-acetyltransferase
447	 49.68	0	442717..443028	+	103	56551343	-	ZMO0447	-	hypothetical protein
448	 48.84	0	443044..443733	-	229	56551344	-	ZMO0448	-	cell wall hydrolyses
449	 47.01	0	444524..445291	+	255	56551345	-	ZMO0449	-	hypothetical protein
450	 49.08	0	445314..446558	+	414	56551346	-	ZMO0450	-	hypothetical protein
451	 45.95	0	446537..446647	-	36	56551347	-	ZMO0451	-	hypothetical protein
452	 43.48	0	446661..446798	+	45	56551348	-	ZMO0452	-	hypothetical protein
453	 48.28	0	446865..448229	+	454	56551349	engA	ZMO0453	-	GTP-binding protein EngA
454	 49.77	0	449330..449968	-	212	56551350	fhs	ZMO0454	-	formate-tetrahydrofolate ligase
455	 39.64	-1	450154..450264	-	36	56551351	-	ZMO0455	-	hypothetical protein
456	 47.80	0	450398..450715	+	105	56551352	vanB	ZMO0456	-	vanillate O-demethylase oxidoreductase
457	 42.83	0	450841..451335	+	164	56551353	grp	ZMO0457	-	glutamate uptake regulatory protein
458	 46.35	0	451332..452030	-	232	56551354	-	ZMO0458	-	lipoprotein releasing system ATP-binding protein
459	 46.60	0	452023..453273	-	416	56551355	lolC	ZMO0459	-	ABC-type transport system
460	 48.94	0	453475..454602	-	375	56551356	proS	ZMO0460	-	prolyl-tRNA synthetase
461	 30.67	-2	454572..454721	-	49	56551357	-	ZMO0461	-	hypothetical protein
462	 46.97	0	455092..456726	-	544	56551358	pyrG	ZMO0462	-	CTP synthetase
463	 36.05	-1	456735..456881	+	48	56551359	-	ZMO0463	-	hypothetical protein
464	 52.21	+1	456865..457293	-	142	56551360	secG	ZMO0464	-	preprotein translocase subunit
465	 51.73	0	457473..458222	-	249	56551361	tpi	ZMO0465	-	triosephosphate isomerase
466	 30.95	-2	458279..458404	-	41	56551362	-	ZMO0466	-	hypothetical protein
467	 47.01	0	458508..460466	+	652	56551363	-	ZMO0467	-	peptidyl-prolyl isomerase
468	 48.03	0	460463..462013	+	516	56551364	trpE	ZMO0468	-	anthranilate synthase component I
469	 44.21	0	462052..462483	-	143	56551365	-	ZMO0469	-	hypothetical protein
470	 37.41	-1	462592..462738	-	48	56551366	-	ZMO0470	-	hypothetical protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.