IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
315	 40.62	-1	315482..315673	-	63	56551211	-	ZMO0315	-	hypothetical protein
316	 44.97	0	315707..315895	+	62	56551212	-	ZMO0316	-	hypothetical protein
317	 28.10	-2	316011..316220	-	69	56551213	-	ZMO0317	-	hypothetical protein
318	 46.83	0	316209..316964	+	251	56551214	-	ZMO0318	-	oxidoreductase
319	 41.37	0	317037..317285	-	82	56551215	-	ZMO0319	-	hypothetical protein
320	 33.33	-2	317573..317752	+	59	56551216	-	ZMO0320	-	hypothetical protein
321	 43.17	0	317899..318396	+	165	56551217	dhfrIII	ZMO0321	-	dihydrofolate reductase
322	 49.74	0	318735..319679	+	314	56551218	ribF	ZMO0322	-	riboflavin biosynthesis protein
323	 48.87	0	319798..322623	+	941	56551219	ileS	ZMO0323	-	isoleucyl-tRNA synthetase
324	 45.14	0	322627..323151	+	174	56551220	lspA	ZMO0324	-	lipoprotein signal peptidase
325	 51.85	+1	323236..323748	+	170	56551221	-	ZMO0325	-	hypothetical protein
326	 48.65	0	323765..324208	-	147	56551222	-	ZMO0326	-	7-cyano-7-deazaguanine reductase
327	 48.41	0	324392..326440	+	682	56551223	metC	ZMO0327	-	cystathionine beta-lyase
328	 48.58	0	326596..327159	+	187	56551224	efp	ZMO0328	-	elongation factor P
329	 51.59	0	327159..327974	+	271	56551225	cbbF	ZMO0329	-	fructose-1,6-bisphosphatase
330	 33.33	-2	327960..328142	-	60	56551226	-	ZMO0330	-	hypothetical protein
331	 46.06	0	328420..329016	+	198	56551227	-	ZMO0331	-	hypothetical protein
332	 49.09	0	329081..329797	-	238	56551228	thiE	ZMO0332	-	thiamine-phosphate pyrophosphorylase
333	 33.33	-2	329973..330149	-	58	56551229	-	ZMO0333	-	hypothetical protein
334	 37.50	-1	330029..330196	+	55	56551230	-	ZMO0334	-	hypothetical protein
335	 46.56	0	330186..330971	+	261	56551231	-	ZMO0335	-	ATPase
336	 46.81	0	331068..331742	+	224	56551232	-	ZMO0336	-	DnaJ domain-containing protein
337	 31.58	-2	331732..331845	+	37	56551233	-	ZMO0337	-	hypothetical protein
338	 30.70	-2	331739..331852	-	37	56551234	-	ZMO0338	-	hypothetical protein
339	 49.42	0	331883..333262	+	459	56551235	exoC	ZMO0339	-	phosphoglucomutase
340	 36.60	-1	333237..333389	+	50	56551236	-	ZMO0340	-	hypothetical protein
341	 49.10	0	333449..334228	+	259	56551237	-	ZMO0341	-	oxidoreductase
342	 49.46	0	334290..335492	-	400	56551238	aatA	ZMO0342	-	aspartate aminotransferase
343	 44.35	0	335615..336286	-	223	56551239	-	ZMO0343	-	anthranilate/para-aminobenzoate synthase component I
344	 49.41	0	336589..338031	+	480	56551240	-	ZMO0344	-	Zn-dependent protease
345	 45.94	0	338326..339039	+	237	56551241	-	ZMO0345	-	metal-dependent hydrolase
346	 48.37	0	339240..340589	+	449	56551242	amtB	ZMO0346	-	ammonia permease
347	 45.88	0	340984..341469	+	161	56551243	hfq	ZMO0347	-	RNA-binding protein Hfq
348	 50.90	0	341466..342848	+	460	56551244	-	ZMO0348	-	GTPase
349	 48.68	0	342869..343435	+	188	56551245	-	ZMO0349	-	putative transcriptional regulator
350	 45.45	0	343575..344201	+	208	56551246	-	ZMO0350	-	hypothetical protein
351	 47.37	0	344424..349625	+	1733	56551247	-	ZMO0351	-	DNA and RNA helicase
352	 44.12	0	349727..351358	+	543	56551248	-	ZMO0352	-	hypothetical protein
353	 46.88	0	351403..352746	+	447	56551249	-	ZMO0353	-	pyrophosphorylase
354	 50.13	0	352884..354776	-	630	56551250	mutL	ZMO0354	-	DNA mismatch repair enzyme
355	 52.15	+1	354983..356029	+	348	56551251	mreB	ZMO0355	-	ATPase
356	 50.49	0	356060..357079	+	339	56551252	mreC	ZMO0356	-	rod shape-determining protein
357	 44.93	0	357093..357644	+	183	56551253	-	ZMO0357	-	hypothetical protein
358	 38.46	-1	357685..357801	-	38	56551254	-	ZMO0358	-	hypothetical protein
359	 49.01	0	357835..359703	+	622	56551255	mrdA	ZMO0359	-	cell division protein
360	 47.52	0	359715..360821	+	368	56551256	mrdB	ZMO0360	-	rod shape-determining protein
361	 44.91	0	361428..362420	+	330	56551257	-	ZMO0361	-	hypothetical protein
362	 47.01	0	362518..364740	+	740	56551258	uvrB	ZMO0362	-	excinuclease ABC subunit B
363	 50.33	0	364874..366073	+	399	56551259	tgt	ZMO0363	-	tRNA guanine transglycosylase
364	 43.90	0	366120..368315	+	731	56551260	ligA	ZMO0364	-	DNA ligase
365	 23.53	-2	368372..368473	+	33	56551261	-	ZMO0365	-	hypothetical protein
366	 48.73	0	368688..370109	+	473	56551262	glf	ZMO0366	-	glucose facilitated diffusion protein
367	 47.05	0	370255..371712	+	485	56551263	zwf	ZMO0367	-	glucose-6-phosphate 1-dehydrogenase
368	 51.32	0	371705..373528	+	607	56551264	edd	ZMO0368	-	phosphogluconate dehydratase
369	 48.82	0	373661..374635	+	324	56551265	glk	ZMO0369	-	glucokinase
370	 28.57	-2	374605..374730	-	41	56551266	-	ZMO0370	-	hypothetical protein
371	 47.39	0	375138..375827	-	229	56551267	asr	ZMO0371	-	aspartate racemase
372	 39.18	-1	375999..376460	+	153	56551268	-	ZMO0372	-	global regulatory protein
373	 35.85	-1	376457..376813	-	118	56551269	-	ZMO0373	-	hypothetical protein
374	 47.64	0	377648..378919	+	423	56551270	sacB	ZMO0374	-	levansucrase
375	 47.10	0	379075..380316	+	413	56551271	sacC	ZMO0375	-	extracellular sucrase
376	 48.62	0	380607..383033	-	808	56551272	lon	ZMO0376	-	ATP-dependent Lon protease
377	 44.44	0	383220..383849	+	209	56551273	tag	ZMO0377	-	3-methyladenine DNA glycosylase
378	 46.94	0	383933..384439	+	168	56551274	-	ZMO0378	-	hypothetical protein
379	 49.57	0	384439..385725	+	428	56551275	-	ZMO0379	-	terminase
380	 47.63	0	385768..387957	+	729	56551276	-	ZMO0380	-	putative portal protein
381	 46.00	0	387957..388256	+	99	56551277	-	ZMO0381	-	hypothetical protein
382	 49.71	0	388306..388476	+	56	56551278	-	ZMO0382	-	hypothetical protein
383	 50.76	0	388445..389230	+	261	56551279	-	ZMO0383	-	hypothetical protein
384	 42.59	0	389256..389363	+	35	56551280	-	ZMO0384	-	hypothetical protein
385	 40.83	-1	389548..389667	+	39	56551281	-	ZMO0385	-	hypothetical protein
386	 48.33	0	389599..389718	-	39	56551282	-	ZMO0386	-	hypothetical protein
387	 53.84	+1	389894..390610	+	238	56551283	-	ZMO0387	-	major head protein
388	 46.67	0	390746..391090	+	114	56551284	-	ZMO0388	-	hypothetical protein
389	 50.15	0	391100..391759	+	219	56551285	-	ZMO0389	-	constituent protein
390	 49.44	0	391753..393174	+	473	56551286	-	ZMO0390	-	hypothetical protein
391	 50.36	0	393144..393419	+	91	56551287	-	ZMO0391	-	hypothetical protein
392	 48.61	0	393398..393901	+	167	56551288	-	ZMO0392	-	hypothetical protein
393	 46.88	0	393902..394573	+	223	56551289	-	ZMO0393	-	hypothetical protein
394	 46.37	0	394586..395260	+	224	56551290	-	ZMO0394	-	hypothetical protein
395	 49.00	0	395407..395757	-	116	56551292	-	ZMO0396	-	hypothetical protein
396	 49.86	0	395440..395808	+	122	56551291	-	ZMO0395	-	hypothetical protein
397	 48.77	0	395805..396251	+	148	56551293	-	ZMO0397	-	hypothetical protein
398	 48.12	0	396205..396657	+	150	56551294	-	ZMO0398	-	RTX toxin
399	 48.10	0	396662..397663	+	333	56551295	-	ZMO0399	-	neck appendage protein precursor
400	 47.95	0	397668..400322	+	884	56551296	-	ZMO0400	-	hypothetical protein
401	 39.42	-1	400332..402383	-	683	56551297	-	ZMO0401	-	signal transduction protein
402	 47.90	0	402603..403268	-	221	56551298	ftsJ	ZMO0402	-	23S rRNA methylase
403	 49.37	0	403265..404368	-	367	56551299	ppx	ZMO0403	-	exopolyphosphatase
404	 43.64	0	405047..405211	+	54	56551300	-	ZMO0404	-	hypothetical protein
405	 49.01	0	405319..407640	+	773	56551301	clpA	ZMO0405	-	ATPase
406	 46.35	0	407730..408551	-	273	56551302	-	ZMO0406	-	ABC-type multidrug transport system
407	 54.55	+1	408703..409395	+	230	56551303	-	ZMO0407	-	hypothetical protein
408	 48.39	0	409612..410820	+	402	56551304	argD	ZMO0408	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
409	 49.42	0	410842..411792	+	316	56551305	argF	ZMO0409	-	ornithine carbamoyltransferase
410	 45.67	0	411921..412844	+	307	56551306	hslO	ZMO0410	-	chaperone protein Hsp33
411	 48.66	0	412919..414901	+	660	56551307	gyrB	ZMO0411	-	DNA topoisomerase IV subunit B
412	 45.77	0	415097..415723	-	208	56551308	-	ZMO0412	-	multiple antibiotic transporter
413	 42.20	0	415912..416238	-	108	56551309	-	ZMO0413	-	hypothetical protein
414	 45.34	0	416262..417302	-	346	56551310	-	ZMO0414	-	hypothetical protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.