IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
198	 51.42	0	190144..191271	+	375	56551094	rf-2	ZMO0198	-	protein chain release factor B
199	 47.25	0	191324..191977	-	217	56551095	lexA	ZMO0199	-	LexA repressor
200	 50.78	0	192143..193168	-	341	56551096	trpD	ZMO0200	-	anthranilate phosphoribosyltransferase
201	 46.03	0	193195..193824	-	209	56551097	trpG	ZMO0201	-	anthranilate/para-aminobenzoate synthase component II
202	 47.91	0	194772..196664	+	630	56551098	mcpA	ZMO0202	-	chemotaxis methyl-accepting protein
203	 44.22	0	196706..197155	-	149	56551099	pbrR	ZMO0203	-	heavy metal resistance transcriptional regulator
204	 43.98	0	197207..197854	+	215	56551100	czcD	ZMO0204	-	Co/Zn/Cd efflux system component
205	 51.62	0	197858..198781	-	307	56551101	-	ZMO0205	-	nucleoside-diphosphate-sugar epimerase
206	 51.59	0	198778..199971	-	397	56551102	proB	ZMO0206	-	gamma-glutamyl kinase
207	 52.78	+1	199956..200999	-	347	56551103	obgE	ZMO0207	-	GTPase ObgE
208	 51.23	0	201091..201699	-	202	56551104	-	ZMO0208	-	hypothetical protein
209	 49.26	0	201892..202161	-	89	56551105	rpmA	ZMO0209	-	50S ribosomal protein L27
210	 39.84	-1	202206..202328	+	40	56551106	-	ZMO0210	-	hypothetical protein
211	 54.69	+1	202294..202602	-	102	161611322	rplU	ZMO0211	-	50S ribosomal protein L21
212	 36.67	-1	202781..202900	+	39	56551108	-	ZMO0212	-	hypothetical protein
213	 50.22	0	202906..205380	-	824	56551109	sppA	ZMO0213	-	autotransporter
214	 46.12	0	206592..208046	-	484	56551110	dinF	ZMO0214	-	putative cation efflux pump
215	 47.36	0	208259..208921	+	220	56551111	-	ZMO0215	-	5-formyltetrahydrofolate cyclo-ligase
216	 47.02	0	209001..210410	-	469	56551112	-	ZMO0216	-	membrane protein
217	 49.51	0	210418..210621	-	67	56551113	-	ZMO0217	-	hypothetical protein
218	 33.33	-2	210739..210858	+	39	56551114	-	ZMO0218	-	hypothetical protein
219	 47.95	0	210925..213756	+	943	56551115	helY	ZMO0219	-	ATP-dependent helicase
220	 46.02	0	213988..214326	+	112	56551116	fdxA	ZMO0220	-	ferredoxin
221	 49.73	0	214655..215209	+	184	56551117	-	ZMO0221	-	transcriptional regulator
222	 42.33	0	215423..215722	+	99	56551118	-	ZMO0222	-	hypothetical protein
223	 40.94	-1	215802..216563	+	253	56551119	-	ZMO0223	-	hypothetical protein
224	 45.68	0	216572..217219	-	215	56551120	-	ZMO0224	-	hypothetical protein
225	 50.53	0	217219..218340	-	373	56551121	metX	ZMO0225	-	homoserine O-acetyltransferase
226	 48.53	0	218719..219468	+	249	56551122	sdh	ZMO0226	-	serine dehydrogenase
227	 47.58	0	219484..222249	+	921	56551123	polA	ZMO0227	-	DNA polymerase I
228	 51.28	0	222231..223634	+	467	56551124	-	ZMO0228	-	membrane protein
229	 48.33	0	223778..224824	+	348	56551125	-	ZMO0229	-	ABC-type Fe3+ transport system
230	 48.22	0	224821..225606	+	261	56551126	fhuC	ZMO0230	-	ABC-type cobalamin/Fe3+ transport systems
231	 49.03	0	225865..226380	+	171	56551127	-	ZMO0231	-	hypothetical protein
232	 51.87	+1	226497..227246	-	249	56551128	-	ZMO0232	-	rRNA methylase
233	 37.73	-1	227819..228205	-	128	56551129	-	ZMO0233	-	hypothetical protein
234	 51.81	+1	228298..229959	-	553	56551130	-	ZMO0234	-	trypsin-like serine protease
235	 35.71	-2	230303..230428	-	41	56551131	-	ZMO0235	-	hypothetical protein
236	 49.37	0	230409..231437	+	342	56551132	-	ZMO0236	-	ATPase
237	 37.04	-1	231450..231557	-	35	56551133	-	ZMO0237	-	hypothetical protein
238	 49.01	0	231871..232425	+	184	56551134	atpH	ZMO0238	-	ATP synthase delta subunit
239	 50.85	0	232428..233957	+	509	56551135	atpA	ZMO0239	-	F0F1 ATP synthase subunit alpha
240	 48.05	0	233991..234887	+	298	56551136	atpG	ZMO0240	-	F0F1 ATP synthase subunit gamma
241	 50.31	0	234916..236370	+	484	56551137	atpD	ZMO0241	-	F0F1 ATP synthase subunit beta
242	 46.07	0	236430..236696	+	88	56551138	atpC	ZMO0242	-	F0F1 ATP synthase subunit epsilon
243	 47.51	0	237095..237898	-	267	56551139	-	ZMO0243	-	hypothetical protein
244	 48.91	0	238193..238468	-	91	56551140	-	ZMO0244	-	HU DNA-binding protein
245	 34.78	-2	238673..238810	+	45	56551141	-	ZMO0245	-	hypothetical protein
246	 49.19	0	239003..239557	+	184	56551142	hslV	ZMO0246	-	ATP-dependent protease peptidase subunit
247	 47.02	0	239582..240874	+	430	56551143	hslU	ZMO0247	-	ATP-dependent protease ATP-binding subunit
248	 38.46	-1	240896..241090	+	64	56551144	-	ZMO0248	-	hypothetical protein
249	 41.67	0	241160..241327	+	55	56551145	rpmG	ZMO0249	-	50S ribosomal protein L33
250	 43.25	0	241443..241805	-	120	56551146	-	ZMO0250	-	two-component response regulator
251	 49.89	0	241977..242435	+	152	56551147	-	ZMO0251	-	putative translation initiation inhibitor
252	 49.02	0	242784..251738	+	2984	56551148	ompA	ZMO0252	-	RTX family exoprotein
253	 50.68	0	251743..253218	+	491	56551149	tolC	ZMO0253	-	outer membrane efflux protein
254	 49.02	0	253215..255362	+	715	56551150	cyaB	ZMO0254	-	cytoplasmic membrane export protein
255	 48.73	0	255355..256536	+	393	56551151	-	ZMO0255	-	membrane spanning export protein
256	 45.97	0	256658..258382	+	574	56551152	-	ZMO0256	-	D-lactate dehydrogenase
257	 49.85	0	258605..259282	+	225	56551153	-	ZMO0257	-	two-component response regulator
258	 48.77	0	259285..260742	+	485	56551154	-	ZMO0258	-	two-component signal transduction histidine kinase
259	 44.44	0	260873..260989	-	38	56551155	-	ZMO0259	-	hypothetical protein
260	 46.90	0	260993..261604	+	203	56551156	cycV	ZMO0260	-	ABC-type transport system ATPase component
261	 44.00	0	261573..261722	+	49	56551157	-	ZMO0261	-	hypothetical protein
262	 50.09	0	261712..262248	+	178	56551158	-	ZMO0262	-	ABC-type transport system permease component
263	 40.31	-1	262254..263657	-	467	56551159	-	ZMO0263	-	hypothetical protein
264	 37.18	-1	263712..265166	-	484	56551160	-	ZMO0264	-	hypothetical protein
265	 40.04	-1	265200..266630	-	476	56551161	-	ZMO0265	-	hypothetical protein
266	 39.71	-1	266685..268112	-	475	56551162	-	ZMO0266	-	hypothetical protein
267	 40.44	-1	268167..269615	-	482	56551163	-	ZMO0267	-	hypothetical protein
268	 40.77	-1	269649..271073	-	474	56551164	-	ZMO0268	-	hypothetical protein
269	 43.95	0	271128..272549	-	473	56551165	-	ZMO0269	-	hypothetical protein
270	 40.69	-1	272604..274085	-	493	56551166	-	ZMO0270	-	hypothetical protein
271	 49.88	0	275186..276472	+	428	56551167	lnt	ZMO0271	-	apolipoprotein N-acyltransferase
272	 35.75	-2	276469..276675	-	68	56551168	-	ZMO0272	-	hypothetical protein
273	 50.51	0	276665..277840	+	391	56551169	metK	ZMO0273	-	S-adenosylmethionine synthetase
274	 48.00	0	277915..279414	-	499	56551170	rpoN1	ZMO0274	-	RNA polymerase factor sigma-54
275	 49.43	0	279462..280256	-	264	56551171	-	ZMO0275	-	ABC-type transport system ATPase component
276	 50.42	0	280459..281055	-	198	56551172	-	ZMO0276	-	hypothetical protein
277	 48.83	0	281061..281699	-	212	56551173	-	ZMO0277	-	hypothetical protein
278	 48.06	0	281732..282349	-	205	56551174	rnd	ZMO0278	-	ribonuclease D 3'-5' exonuclease
279	 51.41	0	282879..283409	+	176	56551175	-	ZMO0279	-	cold shock protein
280	 38.46	-1	283440..283595	+	51	56551176	-	ZMO0280	-	hypothetical protein
281	 43.06	0	283802..284449	-	215	56551177	-	ZMO0281	-	TetR family transcriptional regulator
282	 48.72	0	284674..285843	+	389	56551178	acrA	ZMO0282	-	acridine efflux pump
283	 48.28	0	285847..288990	+	1047	56551179	mexB	ZMO0283	-	RND multidrug efflux transporter
284	 49.50	0	288990..289589	+	199	56551180	-	ZMO0284	-	outer membrane protein
285	 48.54	0	289769..290524	+	251	56551181	-	ZMO0285	-	drug efflux lipoprotein
286	 50.31	0	290571..291371	-	266	56551182	-	ZMO0286	-	outer membrane protein
287	 46.65	0	291695..292843	+	382	56551183	-	ZMO0287	-	putative transport protein
288	 39.74	-1	292824..292979	-	51	56551185	-	ZMO0289	-	hypothetical protein
289	 42.86	0	292867..292992	-	41	56551184	-	ZMO0288	-	hypothetical protein
290	 46.46	0	292972..294228	+	418	56551186	-	ZMO0290	-	hypothetical protein
291	 47.72	0	294218..295051	-	277	56551187	lgt	ZMO0291	-	prolipoprotein diacylglyceryl transferase
292	 31.53	-2	295207..295317	+	36	56551188	-	ZMO0292	-	hypothetical protein
293	 49.00	0	295336..296778	-	480	56551189	-	ZMO0293	-	metabolite/sugar transport protein
294	 49.72	0	297463..297639	-	58	56551190	-	ZMO0294	-	ribosomal protein L28
295	 55.26	+1	297686..297799	+	37	56551191	-	ZMO0295	-	hypothetical protein
296	 50.93	0	298056..298538	+	160	56551192	-	ZMO0296	-	cytidine and deoxycytidylate deaminase
297	 50.75	0	298787..300112	+	441	56551193	-	ZMO0297	-	hemolysin
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.