IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1833	 48.97	0	1875630..1875872	+	80	56552729	nifU	ZMO1833	-	nitrogen fixation protein
1834	 46.80	0	1875895..1877052	+	385	56552730	nifS	ZMO1834	-	nitrogenase metalloclusters biosynthesis protein
1835	 50.30	0	1877109..1878269	+	386	56552731	nifV	ZMO1835	-	homocitrate synthase
1836	 40.54	-1	1878314..1878646	+	110	56552732	nifW	ZMO1836	-	nitrogenase stabilizing/protective protein
1837	 48.39	0	1878718..1879587	+	289	56552733	modD	ZMO1837	-	molybdenum transport system protein
1838	 45.07	0	1879711..1879923	-	70	56552734	-	ZMO1838	-	molybdopterin binding protein
1839	 38.46	-1	1880116..1880232	+	38	56552735	-	ZMO1839	-	hypothetical protein
1840	 43.41	0	1880305..1880850	-	181	56552736	-	ZMO1840	-	putative isochorismatase family protein
1841	 46.63	0	1880963..1881496	-	177	56552737	-	ZMO1841	-	sigma E factor positive regulator
1842	 49.67	0	1881468..1882514	-	348	56552738	nosX	ZMO1842	-	maturation factor of nitrous oxide reductase
1843	 20.95	-2	1882665..1882769	+	34	56552739	-	ZMO1843	-	hypothetical protein
1844	 47.08	0	1882850..1883926	-	358	56552740	-	ZMO1844	-	oxidoreductase
1845	 46.26	0	1884064..1884357	-	97	56552741	-	ZMO1845	-	alkylphosphonate uptake protein
1846	 46.82	0	1884490..1885275	-	261	56552742	-	ZMO1846	-	ABC-type Fe3+ transport system ATPase component
1847	 47.63	0	1885239..1886252	-	337	56552743	-	ZMO1847	-	ABC-type Fe3+ transport system permease component
1848	 47.19	0	1886259..1887131	-	290	56552744	-	ZMO1848	-	ABC-type Fe3+ transport system solute-binding protein
1849	 47.60	0	1888120..1889850	+	576	56552745	-	ZMO1849	-	hypothetical protein
1850	 41.60	0	1889959..1890321	-	120	56552746	-	ZMO1850	-	hypothetical protein
1851	 43.69	0	1890318..1890800	-	160	56552747	nifF	ZMO1851	-	flavodoxin FldA
1852	 21.77	-2	1890873..1891019	+	48	56552748	-	ZMO1852	-	hypothetical protein
1853	 43.92	0	1891065..1891961	-	298	56552749	dapA	ZMO1853	-	dihydrodipicolinate synthase
1854	 47.87	0	1892106..1893350	-	414	56552750	-	ZMO1854	-	transcriptional regulator
1855	 45.11	0	1893683..1894438	+	251	56552751	yfeJ	ZMO1855	-	glutamine amidotransferase
1856	 49.80	0	1894602..1895864	-	420	56552752	-	ZMO1856	-	hypothetical protein
1857	 48.10	0	1896023..1896916	+	297	56552753	-	ZMO1857	-	transcriptional regulator
1858	 53.33	+1	1902155..1902289	+	44	56552754	-	ZMO1858	-	hypothetical protein
1859	 44.62	0	1904490..1905614	+	374	56552755	rpfN	ZMO1859	-	carbohydrate-selective porin
1860	 50.21	0	1905686..1906396	-	236	56552756	-	ZMO1860	-	nodulin 21 like protein
1861	 42.19	0	1906936..1907940	-	334	56552757	-	ZMO1861	-	dioxygenase
1862	 46.85	0	1909010..1909120	-	36	56552758	-	ZMO1862	-	hypothetical protein
1863	 44.17	0	1909237..1909725	-	162	56552759	-	ZMO1863	-	putative phosphatase
1864	 48.75	0	1910097..1910576	+	159	56552760	-	ZMO1864	-	transposase
1865	 53.33	+1	1916005..1916139	+	44	56552761	-	ZMO1865	-	hypothetical protein
1866	 49.06	0	1917655..1919295	-	546	56552762	-	ZMO1866	-	metallo-beta-lactamase hydrolase subunit
1867	 50.36	0	1919343..1920170	-	275	56552763	-	ZMO1867	-	pantothenate kinase
1868	 44.53	0	1920199..1921002	-	267	56552764	birA	ZMO1868	-	biotin protein ligase
1869	 45.56	0	1920999..1921832	-	277	56552765	-	ZMO1869	-	ribonuclease I
1870	 50.81	0	1921847..1922830	-	327	56552766	nadC	ZMO1870	-	nicotinate-nucleotide pyrophosphorylase
1871	 47.05	0	1922852..1923850	-	332	56552767	nadA	ZMO1871	-	quinolinate synthetase
1872	 48.01	0	1923865..1924491	-	208	56552768	-	ZMO1872	-	hypothetical protein
1873	 43.84	0	1924527..1924859	-	110	56552769	-	ZMO1873	-	glutaredoxin-related protein
1874	 47.86	0	1924908..1925141	-	77	56552770	bolA	ZMO1874	-	stress-induced morphogen protein
1875	 49.86	0	1925146..1925514	-	122	56552771	-	ZMO1875	-	hypothetical protein
1876	 47.59	0	1925874..1926371	+	165	56552772	-	ZMO1876	-	hypothetical protein
1877	 45.19	0	1926528..1927379	-	283	56552773	-	ZMO1877	-	glutamine cyclotransferase
1878	 50.11	0	1927522..1929387	+	621	56552774	valS	ZMO1878	-	valyl-tRNA synthetase
1879	 51.60	0	1930308..1931309	+	333	56552775	hemB	ZMO1879	-	delta-aminolevulinic acid dehydratase
1880	 48.28	0	1931302..1931910	+	202	56552776	-	ZMO1880	-	hypothetical protein
1881	 45.30	0	1932660..1932776	+	38	56552777	-	ZMO1881	-	hypothetical protein
1882	 46.71	0	1932784..1933770	+	328	56552778	-	ZMO1882	-	putative transport protein
1883	 46.07	0	1933893..1934834	-	313	56552779	serA	ZMO1883	-	phosphoglycerate dehydrogenase
1884	 46.07	0	1934889..1935524	-	211	56552780	-	ZMO1884	-	hypothetical protein
1885	 49.49	0	1935705..1936781	-	358	56552781	ncr	ZMO1885	-	NADH:flavin oxidoreductase
1886	 48.74	0	1936968..1938077	-	369	56552782	-	ZMO1886	-	putative transport protein
1887	 45.86	0	1938082..1938648	-	188	56552783	entB	ZMO1887	-	isochorismatase
1888	 39.33	-1	1938976..1939125	-	49	56552784	-	ZMO1888	-	hypothetical protein
1889	 45.78	0	1939171..1940046	-	291	56552785	-	ZMO1889	-	SAM-dependent methyltransferase
1890	 47.43	0	1940073..1941299	-	408	56552786	-	ZMO1890	-	Zn-dependent peptidase
1891	 48.36	0	1941296..1942726	-	476	161611315	thrC	ZMO1891	-	threonine synthase
1892	 45.30	0	1942913..1943263	-	116	56552788	-	ZMO1892	-	hypothetical protein
1893	 40.10	-1	1943314..1943505	-	63	56552790	-	ZMO1894	-	hypothetical protein
1894	 37.25	-1	1943496..1943597	+	33	56552789	-	ZMO1893	-	hypothetical protein
1895	 45.34	0	1943628..1944635	+	335	56552791	-	ZMO1895	-	sugar kinase
1896	 43.03	0	1944756..1945673	-	305	56552792	secF	ZMO1896	-	preprotein translocase subunit
1897	 48.36	0	1945690..1947273	-	527	56552793	secD	ZMO1897	-	preprotein translocase subunit SecD
1898	 43.68	0	1947280..1947627	-	115	56552794	yajC	ZMO1898	-	preprotein translocase subunit
1899	 47.74	0	1948507..1949478	-	323	56552795	fabH	ZMO1899	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1900	 47.73	0	1949475..1950530	-	351	56552796	plsX	ZMO1900	-	putative glycerol-3-phosphate acyltransferase PlsX
1901	 42.09	0	1950933..1952006	-	357	56552797	-	ZMO1901	-	hypothetical protein
1902	 40.88	-1	1952025..1952753	-	242	56552798	hemD	ZMO1902	-	uroporphyrinogen-III synthase
1903	 45.52	0	1952788..1953714	-	308	56552799	hemC	ZMO1903	-	porphobilinogen deaminase
1904	 44.23	0	1953713..1954804	+	363	56552800	-	ZMO1904	-	metal-dependent protease
1905	 43.40	0	1954805..1955827	+	340	56552801	gpsA	ZMO1905	-	glycerol-3-phosphate dehydrogenase
1906	 46.67	0	1955905..1956444	-	179	56552802	infC	ZMO1906	-	translation initiation factor IF-3
1907	 45.03	0	1956556..1959231	-	891	56552803	mutS	ZMO1907	-	DNA mismatch repair protein
1908	 45.86	0	1959293..1959787	-	164	56552804	-	ZMO1908	-	tmRNA-binding small protein A
1909	 41.85	0	1960001..1960540	+	179	56552805	-	ZMO1909	-	hypothetical protein
1910	 45.85	0	1960707..1961369	+	220	56552806	rplY	ZMO1910	-	ribosomal protein L25
1911	 44.56	0	1961444..1962013	+	189	56552807	-	ZMO1911	-	peptidyl-tRNA hydrolase
1912	 45.69	0	1962063..1963163	+	366	56552808	-	ZMO1912	-	translation-associated GTPase
1913	 41.96	0	1963494..1964444	+	316	56552809	gshB	ZMO1913	-	glutathione synthetase
1914	 45.56	0	1964449..1965372	-	307	56552810	xerC	ZMO1914	-	site-specific tyrosine recombinase XerC
1915	 40.43	-1	1965383..1966819	-	478	56552811	bioD	ZMO1915	-	putative biotin synthesis protein
1916	 42.44	0	1966807..1967454	-	215	56552812	-	ZMO1916	-	hypothetical protein
1917	 42.51	0	1967451..1968659	-	402	56552813	bioF	ZMO1917	-	putative 8-amino-7-oxononanoate synthase
1918	 44.15	0	1968726..1969991	+	421	56552814	bioA	ZMO1918	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1919	 49.58	0	1969988..1970461	-	157	56552815	-	ZMO1919	-	thiol-disulfide isomerase
1920	 56.19	+1	1970774..1971193	+	139	56552816	-	ZMO1920	-	hypothetical protein
1921	 46.15	0	1971322..1973490	+	722	56552817	priA	ZMO1921	-	primosome assembly protein PriA
1922	 47.77	0	1973493..1974974	-	493	56552818	wcbO	ZMO1922	-	capsule polysaccharide export protein
1923	 40.58	-1	1975292..1976767	+	491	56552819	rkpI	ZMO1923	-	capsular polysaccharide biosynthesis protein
1924	 45.60	0	1976779..1977732	-	317	56552820	-	ZMO1924	-	collagenase
1925	 47.71	0	1977729..1979474	-	581	56552821	-	ZMO1925	-	collagenase
1926	 34.21	-2	1979595..1979708	+	37	56552822	-	ZMO1926	-	hypothetical protein
1927	 46.97	0	1979705..1981618	-	637	56552823	sppA	ZMO1927	-	periplasmic serine protease
1928	 47.92	0	1981991..1982278	+	95	56552824	groES	ZMO1928	-	co-chaperonin GroES
1929	 50.64	0	1982385..1984025	+	546	56552825	groEL	ZMO1929	-	chaperonin GroEL
1930	 63.33	+2	1984282..1985481	+	399	56552826	intZ	ZMO1930	-	integrase
1931	 60.58	+2	1985478..1986644	+	388	56552827	-	ZMO1931	-	hypothetical protein
1932	 57.45	+2	1987548..1988339	-	263	56552828	-	ZMO1932	-	hypothetical protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.