IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1808	 46.07	0	1849985..1850251	-	88	56552704	-	ZMO1808	-	hypothetical protein
1809	 49.04	0	1850264..1850938	-	224	56552705	rnfE	ZMO1809	-	SoxR-reducing system protein RsxE
1810	 49.45	0	1850928..1851560	-	210	56552706	rnfG	ZMO1810	-	NADH:ubiquinone oxidoreductase subunit
1811	 49.77	0	1851635..1852711	-	358	56552707	rnfD	ZMO1811	-	NADH:ubiquinone oxidoreductase subunit
1812	 53.07	+1	1852711..1854174	-	487	56552708	rnfC	ZMO1812	-	NADH:ubiquinone oxidoreductase subunit
1813	 52.49	+1	1854185..1854847	-	220	56552709	rnfB	ZMO1813	-	NADH:ubiquinone oxidoreductase subunit
1814	 47.59	0	1854864..1855445	-	193	56552710	rnfA	ZMO1814	-	NADH:ubiquinone oxidoreductase subunit
1815	 47.51	0	1855914..1858121	-	735	56552711	-	ZMO1815	-	TonB-dependent receptor
1816	 46.10	0	1858831..1860537	+	568	56552712	-	ZMO1816	-	transcriptional regulator
1817	 47.28	0	1860746..1862215	+	489	56552713	nifB	ZMO1817	-	nitrogen fixation protein
1818	 48.72	0	1862255..1862449	+	64	56552714	fdxN	ZMO1818	-	ferredoxin
1819	 42.35	0	1862483..1862737	+	84	56552715	nifZ	ZMO1819	-	nitrogen fixation protein
1820	 46.95	0	1862758..1862970	+	70	56552716	fixU	ZMO1820	-	nitrogen fixation protein
1821	 47.85	0	1862970..1863830	+	286	56552717	-	ZMO1821	-	hypothetical protein
1822	 45.87	0	1863843..1865972	-	709	56552718	-	ZMO1822	-	TonB-dependent receptor
1823	 49.77	0	1866350..1867237	+	295	56552719	nifH	ZMO1823	-	nitrogenase reductase
1824	 49.32	0	1867248..1868723	+	491	56552720	nifD	ZMO1824	-	nitrogenase FeMo alpha subunit
1825	 49.41	0	1868783..1870318	+	511	56552721	nifK	ZMO1825	-	nitrogenase FeMo beta subunit protein
1826	 48.80	0	1870387..1871841	+	484	56552722	nifE	ZMO1826	-	nitrogenase FeMo cofactor synthesis protein
1827	 47.70	0	1871838..1873208	+	456	56552723	nifN	ZMO1827	-	nitrogenase FeMo cofactor synthesis protein
1828	 50.71	0	1873201..1873695	+	164	56552724	nifX	ZMO1828	-	nitrogenase FeMo cofactor synthesis protein
1829	 48.60	0	1873685..1874149	+	154	56552725	-	ZMO1829	-	hypothetical protein
1830	 49.61	0	1873988..1874503	-	171	56552726	fdxB	ZMO1830	-	ferredoxin
1831	 46.26	0	1874486..1875073	+	195	56552727	nifQ	ZMO1831	-	nitrogen fixation protein
1832	 46.30	0	1875249..1875572	+	107	56552728	-	ZMO1832	-	hypothetical protein
1833	 48.97	0	1875630..1875872	+	80	56552729	nifU	ZMO1833	-	nitrogen fixation protein
1834	 46.80	0	1875895..1877052	+	385	56552730	nifS	ZMO1834	-	nitrogenase metalloclusters biosynthesis protein
1835	 50.30	0	1877109..1878269	+	386	56552731	nifV	ZMO1835	-	homocitrate synthase
1836	 40.54	-1	1878314..1878646	+	110	56552732	nifW	ZMO1836	-	nitrogenase stabilizing/protective protein
1837	 48.39	0	1878718..1879587	+	289	56552733	modD	ZMO1837	-	molybdenum transport system protein
1838	 45.07	0	1879711..1879923	-	70	56552734	-	ZMO1838	-	molybdopterin binding protein
1839	 38.46	-1	1880116..1880232	+	38	56552735	-	ZMO1839	-	hypothetical protein
1840	 43.41	0	1880305..1880850	-	181	56552736	-	ZMO1840	-	putative isochorismatase family protein
1841	 46.63	0	1880963..1881496	-	177	56552737	-	ZMO1841	-	sigma E factor positive regulator
1842	 49.67	0	1881468..1882514	-	348	56552738	nosX	ZMO1842	-	maturation factor of nitrous oxide reductase
1843	 20.95	-2	1882665..1882769	+	34	56552739	-	ZMO1843	-	hypothetical protein
1844	 47.08	0	1882850..1883926	-	358	56552740	-	ZMO1844	-	oxidoreductase
1845	 46.26	0	1884064..1884357	-	97	56552741	-	ZMO1845	-	alkylphosphonate uptake protein
1846	 46.82	0	1884490..1885275	-	261	56552742	-	ZMO1846	-	ABC-type Fe3+ transport system ATPase component
1847	 47.63	0	1885239..1886252	-	337	56552743	-	ZMO1847	-	ABC-type Fe3+ transport system permease component
1848	 47.19	0	1886259..1887131	-	290	56552744	-	ZMO1848	-	ABC-type Fe3+ transport system solute-binding protein
1849	 47.60	0	1888120..1889850	+	576	56552745	-	ZMO1849	-	hypothetical protein
1850	 41.60	0	1889959..1890321	-	120	56552746	-	ZMO1850	-	hypothetical protein
1851	 43.69	0	1890318..1890800	-	160	56552747	nifF	ZMO1851	-	flavodoxin FldA
1852	 21.77	-2	1890873..1891019	+	48	56552748	-	ZMO1852	-	hypothetical protein
1853	 43.92	0	1891065..1891961	-	298	56552749	dapA	ZMO1853	-	dihydrodipicolinate synthase
1854	 47.87	0	1892106..1893350	-	414	56552750	-	ZMO1854	-	transcriptional regulator
1855	 45.11	0	1893683..1894438	+	251	56552751	yfeJ	ZMO1855	-	glutamine amidotransferase
1856	 49.80	0	1894602..1895864	-	420	56552752	-	ZMO1856	-	hypothetical protein
1857	 48.10	0	1896023..1896916	+	297	56552753	-	ZMO1857	-	transcriptional regulator
1858	 53.33	+1	1902155..1902289	+	44	56552754	-	ZMO1858	-	hypothetical protein
1859	 44.62	0	1904490..1905614	+	374	56552755	rpfN	ZMO1859	-	carbohydrate-selective porin
1860	 50.21	0	1905686..1906396	-	236	56552756	-	ZMO1860	-	nodulin 21 like protein
1861	 42.19	0	1906936..1907940	-	334	56552757	-	ZMO1861	-	dioxygenase
1862	 46.85	0	1909010..1909120	-	36	56552758	-	ZMO1862	-	hypothetical protein
1863	 44.17	0	1909237..1909725	-	162	56552759	-	ZMO1863	-	putative phosphatase
1864	 48.75	0	1910097..1910576	+	159	56552760	-	ZMO1864	-	transposase
1865	 53.33	+1	1916005..1916139	+	44	56552761	-	ZMO1865	-	hypothetical protein
1866	 49.06	0	1917655..1919295	-	546	56552762	-	ZMO1866	-	metallo-beta-lactamase hydrolase subunit
1867	 50.36	0	1919343..1920170	-	275	56552763	-	ZMO1867	-	pantothenate kinase
1868	 44.53	0	1920199..1921002	-	267	56552764	birA	ZMO1868	-	biotin protein ligase
1869	 45.56	0	1920999..1921832	-	277	56552765	-	ZMO1869	-	ribonuclease I
1870	 50.81	0	1921847..1922830	-	327	56552766	nadC	ZMO1870	-	nicotinate-nucleotide pyrophosphorylase
1871	 47.05	0	1922852..1923850	-	332	56552767	nadA	ZMO1871	-	quinolinate synthetase
1872	 48.01	0	1923865..1924491	-	208	56552768	-	ZMO1872	-	hypothetical protein
1873	 43.84	0	1924527..1924859	-	110	56552769	-	ZMO1873	-	glutaredoxin-related protein
1874	 47.86	0	1924908..1925141	-	77	56552770	bolA	ZMO1874	-	stress-induced morphogen protein
1875	 49.86	0	1925146..1925514	-	122	56552771	-	ZMO1875	-	hypothetical protein
1876	 47.59	0	1925874..1926371	+	165	56552772	-	ZMO1876	-	hypothetical protein
1877	 45.19	0	1926528..1927379	-	283	56552773	-	ZMO1877	-	glutamine cyclotransferase
1878	 50.11	0	1927522..1929387	+	621	56552774	valS	ZMO1878	-	valyl-tRNA synthetase
1879	 51.60	0	1930308..1931309	+	333	56552775	hemB	ZMO1879	-	delta-aminolevulinic acid dehydratase
1880	 48.28	0	1931302..1931910	+	202	56552776	-	ZMO1880	-	hypothetical protein
1881	 45.30	0	1932660..1932776	+	38	56552777	-	ZMO1881	-	hypothetical protein
1882	 46.71	0	1932784..1933770	+	328	56552778	-	ZMO1882	-	putative transport protein
1883	 46.07	0	1933893..1934834	-	313	56552779	serA	ZMO1883	-	phosphoglycerate dehydrogenase
1884	 46.07	0	1934889..1935524	-	211	56552780	-	ZMO1884	-	hypothetical protein
1885	 49.49	0	1935705..1936781	-	358	56552781	ncr	ZMO1885	-	NADH:flavin oxidoreductase
1886	 48.74	0	1936968..1938077	-	369	56552782	-	ZMO1886	-	putative transport protein
1887	 45.86	0	1938082..1938648	-	188	56552783	entB	ZMO1887	-	isochorismatase
1888	 39.33	-1	1938976..1939125	-	49	56552784	-	ZMO1888	-	hypothetical protein
1889	 45.78	0	1939171..1940046	-	291	56552785	-	ZMO1889	-	SAM-dependent methyltransferase
1890	 47.43	0	1940073..1941299	-	408	56552786	-	ZMO1890	-	Zn-dependent peptidase
1891	 48.36	0	1941296..1942726	-	476	161611315	thrC	ZMO1891	-	threonine synthase
1892	 45.30	0	1942913..1943263	-	116	56552788	-	ZMO1892	-	hypothetical protein
1893	 40.10	-1	1943314..1943505	-	63	56552790	-	ZMO1894	-	hypothetical protein
1894	 37.25	-1	1943496..1943597	+	33	56552789	-	ZMO1893	-	hypothetical protein
1895	 45.34	0	1943628..1944635	+	335	56552791	-	ZMO1895	-	sugar kinase
1896	 43.03	0	1944756..1945673	-	305	56552792	secF	ZMO1896	-	preprotein translocase subunit
1897	 48.36	0	1945690..1947273	-	527	56552793	secD	ZMO1897	-	preprotein translocase subunit SecD
1898	 43.68	0	1947280..1947627	-	115	56552794	yajC	ZMO1898	-	preprotein translocase subunit
1899	 47.74	0	1948507..1949478	-	323	56552795	fabH	ZMO1899	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1900	 47.73	0	1949475..1950530	-	351	56552796	plsX	ZMO1900	-	putative glycerol-3-phosphate acyltransferase PlsX
1901	 42.09	0	1950933..1952006	-	357	56552797	-	ZMO1901	-	hypothetical protein
1902	 40.88	-1	1952025..1952753	-	242	56552798	hemD	ZMO1902	-	uroporphyrinogen-III synthase
1903	 45.52	0	1952788..1953714	-	308	56552799	hemC	ZMO1903	-	porphobilinogen deaminase
1904	 44.23	0	1953713..1954804	+	363	56552800	-	ZMO1904	-	metal-dependent protease
1905	 43.40	0	1954805..1955827	+	340	56552801	gpsA	ZMO1905	-	glycerol-3-phosphate dehydrogenase
1906	 46.67	0	1955905..1956444	-	179	56552802	infC	ZMO1906	-	translation initiation factor IF-3
1907	 45.03	0	1956556..1959231	-	891	56552803	mutS	ZMO1907	-	DNA mismatch repair protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.