IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1749	 52.07	+1	1792197..1793306	+	369	56552645	-	ZMO1749	-	lipoprotein precursor
1750	 38.94	-1	1793454..1793792	-	112	56552646	-	ZMO1750	-	hypothetical protein
1751	 46.67	0	1794718..1795017	+	99	56552647	-	ZMO1751	-	hypothetical protein
1752	 44.68	0	1795195..1795476	+	93	56552648	-	ZMO1752	-	hypothetical protein
1753	 45.89	0	1795811..1796638	+	275	56552649	fpr	ZMO1753	-	ferredoxin-NADP reductase
1754	 49.60	0	1796777..1798153	-	458	56552650	ssdA	ZMO1754	-	NAD-dependent aldehyde dehydrogenase
1755	 48.55	0	1798838..1799356	-	172	56552651	thyB	ZMO1755	-	thymidylate synthase
1756	 50.07	0	1799728..1801083	+	451	56552652	gntP	ZMO1756	-	H+/gluconate symporter
1757	 46.18	0	1801196..1801693	+	165	56552653	gntK	ZMO1757	-	gluconate kinase
1758	 49.95	0	1801766..1802806	-	346	56552654	-	ZMO1758	-	DNA uptake lipoprotein
1759	 40.02	-1	1802960..1803916	-	318	56552655	-	ZMO1759	-	hypothetical protein
1760	 49.78	0	1804005..1804697	-	230	56552656	-	ZMO1760	-	ABC-type branched-chain amino acid transport systems periplasmic component
1761	 46.28	0	1805301..1806188	+	295	56552657	-	ZMO1761	-	methyltransferase
1762	 44.70	0	1806181..1806567	+	128	56552658	-	ZMO1762	-	endonuclease
1763	 48.31	0	1806614..1807234	-	206	56552659	-	ZMO1763	-	hypothetical protein
1764	 49.16	0	1807287..1808714	-	475	56552660	-	ZMO1764	-	peptidoglycan binding domain-containing protein
1765	 32.72	-2	1808858..1809019	-	53	56552661	-	ZMO1765	-	hypothetical protein
1766	 48.05	0	1809004..1809594	-	196	56552662	-	ZMO1766	-	putative magnesium transporter
1767	 49.83	0	1810062..1810928	-	288	56552663	celA	ZMO1767	-	UDPG-pyrophosphorylase
1768	 48.82	0	1811053..1812318	-	421	56552664	lysA	ZMO1768	-	diaminopimelate decarboxylase
1769	 55.95	+1	1812332..1812583	-	83	56552665	-	ZMO1769	-	hypothetical protein
1770	 50.82	0	1812583..1813989	-	468	56552666	argH	ZMO1770	-	argininosuccinate lyase
1771	 46.80	0	1814310..1815467	-	385	56552667	yugJ	ZMO1771	-	NADH-dependent butanol dehydrogenase
1772	 48.59	0	1815702..1816697	+	331	56552668	-	ZMO1772	-	NADPH:quinone oxidoreductase
1773	 48.74	0	1816754..1817584	-	276	56552669	-	ZMO1773	-	aldo/keto reductase
1774	 47.50	0	1817624..1817743	-	39	56552670	-	ZMO1774	-	hypothetical protein
1775	 43.75	0	1818053..1818388	-	111	56552671	-	ZMO1775	-	hypothetical protein
1776	 50.86	0	1818907..1821462	+	851	56552672	pepN	ZMO1776	-	aminopeptidase N
1777	 41.02	-1	1821816..1822856	+	346	56552673	-	ZMO1777	-	hypothetical protein
1778	 43.33	0	1822881..1823900	-	339	56552674	-	ZMO1778	-	hypothetical protein
1779	 47.83	0	1824097..1824510	-	137	56552675	-	ZMO1779	-	hypothetical protein
1780	 41.42	0	1824546..1824854	-	102	56552676	-	ZMO1780	-	hypothetical protein
1781	 45.18	0	1825006..1826136	-	376	56552677	-	ZMO1781	-	hypothetical protein
1782	 44.33	0	1826275..1826574	-	99	56552679	-	ZMO1783	-	hypothetical protein
1783	 46.67	0	1826318..1826587	+	89	56552678	-	ZMO1782	-	hypothetical protein
1784	 38.71	-1	1826764..1827897	+	377	56552680	-	ZMO1784	-	hypothetical protein
1785	 46.05	0	1828084..1828791	-	235	56552681	-	ZMO1785	-	hypothetical protein
1786	 44.41	0	1828973..1829938	+	321	56552682	-	ZMO1786	-	hypothetical protein
1787	 45.78	0	1830011..1830259	-	82	56552683	-	ZMO1787	-	hypothetical protein
1788	 47.48	0	1830602..1832446	-	614	56552684	-	ZMO1788	-	hypothetical protein
1789	 34.81	-2	1832418..1832552	+	44	56552685	-	ZMO1789	-	hypothetical protein
1790	 50.00	0	1832663..1834450	+	595	56552686	-	ZMO1790	-	ABC-type multidrug transport system ATPase component
1791	 40.15	-1	1834459..1834590	-	43	56552687	-	ZMO1791	-	hypothetical protein
1792	 50.62	0	1834565..1836421	-	618	56552688	ilvD	ZMO1792	-	dihydroxy-acid dehydratase
1793	 48.20	0	1836523..1837437	+	304	56552689	ilvR	ZMO1793	-	isoleucine biosynthesis transcriptional activator
1794	 46.91	0	1837806..1838129	-	107	56552690	-	ZMO1794	-	hypothetical protein
1795	 37.55	-1	1838158..1838394	+	78	56552691	-	ZMO1795	-	hypothetical protein
1796	 50.51	0	1838410..1839771	+	453	56552692	aroA	ZMO1796	-	3-phosphoshikimate 1-carboxyvinyltransferase
1797	 48.82	0	1839768..1840400	+	210	56552693	cmk	ZMO1797	-	cytidylate kinase
1798	 52.31	+1	1840667..1842373	+	568	56552694	rpsA	ZMO1798	-	30S ribosomal protein S1
1799	 36.27	-1	1842402..1842503	+	33	56552695	-	ZMO1799	-	hypothetical protein
1800	 47.86	0	1842500..1843339	-	279	56552696	-	ZMO1800	-	phenazine biosynthesis protein
1801	 44.56	0	1843616..1843900	+	94	56552697	ihfB	ZMO1801	-	integration host factor beta-subunit
1802	 56.90	+1	1844077..1844250	-	57	56552698	-	ZMO1802	-	hypothetical protein
1803	 47.01	0	1844281..1844397	-	38	56552699	-	ZMO1803	-	hypothetical protein
1804	 47.21	0	1844396..1845829	+	477	56552700	-	ZMO1804	-	amino acid transporter
1805	 48.32	0	1845889..1846542	-	217	56552701	cbbZ	ZMO1805	-	phosphoglycolate phosphatase
1806	 46.67	0	1846769..1847368	-	199	56552702	-	ZMO1806	-	putative acetyltransferase
1807	 42.77	0	1847550..1849934	+	794	56552703	-	ZMO1807	-	TonB-dependent receptor
1808	 46.07	0	1849985..1850251	-	88	56552704	-	ZMO1808	-	hypothetical protein
1809	 49.04	0	1850264..1850938	-	224	56552705	rnfE	ZMO1809	-	SoxR-reducing system protein RsxE
1810	 49.45	0	1850928..1851560	-	210	56552706	rnfG	ZMO1810	-	NADH:ubiquinone oxidoreductase subunit
1811	 49.77	0	1851635..1852711	-	358	56552707	rnfD	ZMO1811	-	NADH:ubiquinone oxidoreductase subunit
1812	 53.07	+1	1852711..1854174	-	487	56552708	rnfC	ZMO1812	-	NADH:ubiquinone oxidoreductase subunit
1813	 52.49	+1	1854185..1854847	-	220	56552709	rnfB	ZMO1813	-	NADH:ubiquinone oxidoreductase subunit
1814	 47.59	0	1854864..1855445	-	193	56552710	rnfA	ZMO1814	-	NADH:ubiquinone oxidoreductase subunit
1815	 47.51	0	1855914..1858121	-	735	56552711	-	ZMO1815	-	TonB-dependent receptor
1816	 46.10	0	1858831..1860537	+	568	56552712	-	ZMO1816	-	transcriptional regulator
1817	 47.28	0	1860746..1862215	+	489	56552713	nifB	ZMO1817	-	nitrogen fixation protein
1818	 48.72	0	1862255..1862449	+	64	56552714	fdxN	ZMO1818	-	ferredoxin
1819	 42.35	0	1862483..1862737	+	84	56552715	nifZ	ZMO1819	-	nitrogen fixation protein
1820	 46.95	0	1862758..1862970	+	70	56552716	fixU	ZMO1820	-	nitrogen fixation protein
1821	 47.85	0	1862970..1863830	+	286	56552717	-	ZMO1821	-	hypothetical protein
1822	 45.87	0	1863843..1865972	-	709	56552718	-	ZMO1822	-	TonB-dependent receptor
1823	 49.77	0	1866350..1867237	+	295	56552719	nifH	ZMO1823	-	nitrogenase reductase
1824	 49.32	0	1867248..1868723	+	491	56552720	nifD	ZMO1824	-	nitrogenase FeMo alpha subunit
1825	 49.41	0	1868783..1870318	+	511	56552721	nifK	ZMO1825	-	nitrogenase FeMo beta subunit protein
1826	 48.80	0	1870387..1871841	+	484	56552722	nifE	ZMO1826	-	nitrogenase FeMo cofactor synthesis protein
1827	 47.70	0	1871838..1873208	+	456	56552723	nifN	ZMO1827	-	nitrogenase FeMo cofactor synthesis protein
1828	 50.71	0	1873201..1873695	+	164	56552724	nifX	ZMO1828	-	nitrogenase FeMo cofactor synthesis protein
1829	 48.60	0	1873685..1874149	+	154	56552725	-	ZMO1829	-	hypothetical protein
1830	 49.61	0	1873988..1874503	-	171	56552726	fdxB	ZMO1830	-	ferredoxin
1831	 46.26	0	1874486..1875073	+	195	56552727	nifQ	ZMO1831	-	nitrogen fixation protein
1832	 46.30	0	1875249..1875572	+	107	56552728	-	ZMO1832	-	hypothetical protein
1833	 48.97	0	1875630..1875872	+	80	56552729	nifU	ZMO1833	-	nitrogen fixation protein
1834	 46.80	0	1875895..1877052	+	385	56552730	nifS	ZMO1834	-	nitrogenase metalloclusters biosynthesis protein
1835	 50.30	0	1877109..1878269	+	386	56552731	nifV	ZMO1835	-	homocitrate synthase
1836	 40.54	-1	1878314..1878646	+	110	56552732	nifW	ZMO1836	-	nitrogenase stabilizing/protective protein
1837	 48.39	0	1878718..1879587	+	289	56552733	modD	ZMO1837	-	molybdenum transport system protein
1838	 45.07	0	1879711..1879923	-	70	56552734	-	ZMO1838	-	molybdopterin binding protein
1839	 38.46	-1	1880116..1880232	+	38	56552735	-	ZMO1839	-	hypothetical protein
1840	 43.41	0	1880305..1880850	-	181	56552736	-	ZMO1840	-	putative isochorismatase family protein
1841	 46.63	0	1880963..1881496	-	177	56552737	-	ZMO1841	-	sigma E factor positive regulator
1842	 49.67	0	1881468..1882514	-	348	56552738	nosX	ZMO1842	-	maturation factor of nitrous oxide reductase
1843	 20.95	-2	1882665..1882769	+	34	56552739	-	ZMO1843	-	hypothetical protein
1844	 47.08	0	1882850..1883926	-	358	56552740	-	ZMO1844	-	oxidoreductase
1845	 46.26	0	1884064..1884357	-	97	56552741	-	ZMO1845	-	alkylphosphonate uptake protein
1846	 46.82	0	1884490..1885275	-	261	56552742	-	ZMO1846	-	ABC-type Fe3+ transport system ATPase component
1847	 47.63	0	1885239..1886252	-	337	56552743	-	ZMO1847	-	ABC-type Fe3+ transport system permease component
1848	 47.19	0	1886259..1887131	-	290	56552744	-	ZMO1848	-	ABC-type Fe3+ transport system solute-binding protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.