IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1644	 50.07	0	1686502..1688580	-	692	56552540	-	ZMO1644	-	DNA helicase
1645	 42.59	0	1688665..1688880	+	71	56552541	-	ZMO1645	-	hypothetical protein
1646	 49.28	0	1688894..1692292	+	1132	56552542	-	ZMO1646	-	transcription-repair coupling factor
1647	 47.64	0	1692548..1693099	-	183	56552543	folK	ZMO1647	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
1648	 46.61	0	1693272..1694009	+	245	56552544	ung	ZMO1648	-	uracil-DNA glycosylase
1649	 49.30	0	1694256..1695326	+	356	56552545	gnl	ZMO1649	-	gluconolactonase
1650	 46.75	0	1695701..1696684	+	327	56552546	-	ZMO1650	-	class C beta-lactamase
1651	 50.63	0	1696779..1699067	-	762	56552547	ptsP	ZMO1651	-	phosphoenolpyruvate-protein phosphotransferase
1652	 52.02	+1	1699084..1700073	-	329	56552548	-	ZMO1652	-	dioxygenase
1653	 51.65	0	1700160..1701431	-	423	56552549	lysC	ZMO1653	-	aspartate kinase
1654	 45.71	0	1701505..1702296	+	263	56552550	ubiG	ZMO1654	-	3-demethylubiquinone-9 3-methyltransferase
1655	 46.77	0	1702381..1702938	+	185	56552551	-	ZMO1655	-	putative bacterioferritin comigratory protein
1656	 47.02	0	1703125..1704030	+	301	56552552	-	ZMO1656	-	hypothetical protein
1657	 50.61	0	1704214..1705284	+	356	56552553	-	ZMO1657	-	hypothetical protein
1658	 50.30	0	1705340..1706329	+	329	56552554	-	ZMO1658	-	ATPase
1659	 49.48	0	1706551..1708464	+	637	56552555	ftsH	ZMO1659	-	ATP-dependent Zn protease
1660	 49.28	0	1708591..1709004	+	137	56552556	-	ZMO1660	-	hypothetical protein
1661	 50.97	0	1709055..1710341	+	428	56552557	proA	ZMO1661	-	gamma-glutamyl phosphate reductase
1662	 50.63	0	1710399..1711034	+	211	56552558	nadD	ZMO1662	-	nicotinic acid mononucleotide adenylyltransferase
1663	 46.02	0	1711043..1711444	+	133	56552559	-	ZMO1663	-	hypothetical protein
1664	 53.15	+1	1711516..1711944	+	142	56552560	-	ZMO1664	-	hypothetical protein
1665	 44.02	0	1711944..1713131	+	395	56552561	-	ZMO1665	-	membrane-bound metallopeptidase
1666	 44.44	0	1713168..1713320	-	50	56552562	-	ZMO1666	-	hypothetical protein
1667	 46.40	0	1713304..1714650	+	448	56552563	ctpA	ZMO1667	-	periplasmic protease
1668	 43.89	0	1714683..1715288	+	201	56552564	dsbB	ZMO1668	-	disulfide bond formation protein
1669	 47.67	0	1715258..1715815	+	185	56552565	-	ZMO1669	-	ubiquinone biosynthesis protein
1670	 45.83	0	1715822..1716253	+	143	56552566	-	ZMO1670	-	hypothetical protein
1671	 52.14	+1	1716363..1716782	+	139	56552567	-	ZMO1671	-	hypothetical protein
1672	 47.92	0	1716917..1717396	+	159	56552568	-	ZMO1672	-	hypothetical protein
1673	 47.69	0	1717504..1718325	-	273	56552569	-	ZMO1673	-	putative oxidoreductase
1674	 45.74	0	1718356..1718484	-	42	56552570	-	ZMO1674	-	hypothetical protein
1675	 48.25	0	1718509..1719279	-	256	56552571	-	ZMO1675	-	protein-disulfide isomerase
1676	 46.85	0	1719530..1720180	-	216	56552572	-	ZMO1676	-	hypothetical protein
1677	 48.75	0	1720215..1721336	+	373	56552573	mutY	ZMO1677	-	A/G-specific DNA glycosylase
1678	 51.37	0	1721340..1722254	-	304	56552574	pheA	ZMO1678	-	prephenate dehydratase
1679	 45.96	0	1722350..1723228	-	292	56552575	-	ZMO1679	-	Rossmann fold nucleotide-binding protein
1680	 47.51	0	1723271..1723933	-	220	56552576	-	ZMO1680	-	hypothetical protein
1681	 49.32	0	1724393..1726087	+	564	56552577	-	ZMO1681	-	aspartate:alanine antiporter
1682	 47.65	0	1726117..1727709	+	530	56552578	asdA	ZMO1682	-	aspartate aminotransferase
1683	 48.23	0	1727805..1728905	+	366	56552579	ansA	ZMO1683	-	periplasmic L-asparaginase II
1684	 50.56	0	1729367..1730527	+	386	56552580	serC	ZMO1684	-	phosphoserine aminotransferase
1685	 49.49	0	1730599..1732182	+	527	56552581	serA	ZMO1685	-	D-3-phosphoglycerate dehydrogenase
1686	 50.45	0	1732379..1733494	+	371	56552582	hisG	ZMO1686	-	ATP phosphoribosyltransferase
1687	 51.86	+1	1733559..1734848	+	429	56552583	purA	ZMO1687	-	adenylosuccinate synthetase
1688	 47.88	0	1734938..1735762	-	274	56552584	-	ZMO1688	-	aminomethyltransferase
1689	 49.14	0	1735806..1737146	+	446	56552585	pyrC	ZMO1689	-	dihydroorotase
1690	 52.12	+1	1737595..1738536	+	313	56552586	-	ZMO1690	-	DnaJ-class molecular chaperone
1691	 44.67	0	1738817..1739839	+	340	56552587	-	ZMO1691	-	hypothetical protein
1692	 48.35	0	1739850..1740668	+	272	56552588	fabI	ZMO1692	-	enoyl-[acyl-carrier-protein] reductase
1693	 53.30	+1	1740665..1741741	+	358	56552589	aroC	ZMO1693	-	chorismate synthase
1694	 48.89	0	1741820..1744300	-	826	56552590	-	ZMO1694	-	TonB-dependent receptor
1695	 46.67	0	1744564..1745103	-	179	56552591	-	ZMO1695	-	hypothetical protein
1696	 47.00	0	1745261..1746277	-	338	56552592	-	ZMO1696	-	alginate lyase
1697	 42.61	0	1746392..1746736	+	114	56552593	-	ZMO1697	-	hypothetical protein
1698	 49.33	0	1746915..1748039	-	374	56552594	ribA	ZMO1698	-	GTP cyclohydrolase II
1699	 47.41	0	1748002..1748811	-	269	56552595	ex3	ZMO1699	-	exonuclease III
1700	 36.36	-1	1749468..1749896	+	142	56552596	-	ZMO1700	-	hypothetical protein
1701	 47.68	0	1749902..1750591	-	229	56552597	-	ZMO1701	-	outer membrane lipoprotein-sorting protein
1702	 49.88	0	1750669..1753104	-	811	56552598	ftsK	ZMO1702	-	DNA segregation ATPase
1703	 50.33	0	1753261..1754478	+	405	56552599	-	ZMO1703	-	2-polyprenyl-6-methoxyphenol hydroxylase
1704	 47.04	0	1754519..1755211	-	230	56552600	lonD	ZMO1704	-	ATP-dependent proteinase
1705	 47.65	0	1755163..1756077	-	304	56552601	-	ZMO1705	-	thioredoxin
1706	 42.64	0	1756171..1756299	+	42	56552602	-	ZMO1706	-	hypothetical protein
1707	 51.87	+1	1756313..1756900	+	195	161611316	pyrE	ZMO1707	-	orotate phosphoribosyltransferase
1708	 50.32	0	1756922..1757692	+	256	56552604	-	ZMO1708	-	pyridoxal phosphate biosynthetic protein PdxJ
1709	 42.22	0	1757689..1758093	+	134	56552605	acpS	ZMO1709	-	phosphopantetheinyl transferase
1710	 45.28	0	1758149..1759027	+	292	56552606	lepB	ZMO1710	-	signal peptidase I
1711	 48.26	0	1759037..1760155	+	372	56552607	-	ZMO1711	-	permease
1712	 50.36	0	1760234..1760791	-	185	56552608	-	ZMO1712	-	peptidyl-prolyl isomerase
1713	 50.72	0	1761071..1761277	-	68	56552609	rpsU	ZMO1713	-	30S ribosomal protein S21
1714	 43.00	0	1761429..1762049	+	206	56552610	exbD2	ZMO1714	-	biopolymer transport ExbD2 protein
1715	 50.20	0	1762081..1762572	-	163	56552611	exbD1	ZMO1715	-	biopolymer transport ExbD protein
1716	 51.21	0	1762699..1763442	-	247	56552612	exbB	ZMO1716	-	biopolymer transport ExbB protein
1717	 50.82	0	1763619..1764350	-	243	56552613	-	ZMO1717	-	hypothetical protein
1718	 44.29	0	1764707..1765564	+	285	56552614	-	ZMO1718	-	hypothetical protein
1719	 48.23	0	1766273..1767178	+	301	56552615	frk	ZMO1719	-	fructokinase
1720	 51.06	0	1767383..1767760	-	125	56552616	-	ZMO1720	-	DNA-directed RNA polymerase subunit omega
1721	 45.99	0	1767941..1768327	-	128	56552617	gloA	ZMO1721	-	lactoylglutathione lyase
1722	 47.66	0	1768369..1769478	-	369	56552618	adhC	ZMO1722	-	glutathione dependent formaldehyde dehydrogenase
1723	 47.69	0	1769552..1770310	-	252	56552619	-	ZMO1723	-	hypothetical protein
1724	 51.91	+1	1770847..1772127	-	426	56552620	murA	ZMO1724	-	UDP-N-acetylglucosamine enolpyruvyl transferase
1725	 43.86	0	1772232..1772459	-	75	56552621	-	ZMO1725	-	hypothetical protein
1726	 38.49	-1	1772497..1772748	+	83	56552622	-	ZMO1726	-	hypothetical protein
1727	 49.75	0	1772893..1774104	+	403	56552623	-	ZMO1727	-	aminotransferase
1728	 41.56	0	1774108..1774593	-	161	56552624	-	ZMO1728	-	hypothetical protein
1729	 47.56	0	1774714..1774959	-	81	56552625	-	ZMO1729	-	hypothetical protein
1730	 45.48	0	1775055..1775828	-	257	56552626	cysE	ZMO1730	-	serine acetyltransferase
1731	 34.01	-2	1776030..1776176	+	48	56552627	-	ZMO1731	-	hypothetical protein
1732	 47.15	0	1776173..1776715	-	180	56552628	ahpC	ZMO1732	-	alkyl hydroperoxide reductase
1733	 50.21	0	1776907..1777848	+	313	56552629	-	ZMO1733	-	transcriptional regulator
1734	 42.59	0	1778201..1779388	+	395	56552630	-	ZMO1734	-	hypothetical protein
1735	 46.99	0	1779399..1780313	-	304	56552631	-	ZMO1735	-	LPS glycosyltransferase
1736	 44.24	0	1780408..1780572	-	54	56552632	-	ZMO1736	-	hypothetical protein
1737	 40.97	-1	1780542..1780685	+	47	56552633	-	ZMO1737	-	hypothetical protein
1738	 48.31	0	1780740..1781540	-	266	56552634	-	ZMO1738	-	two-component response regulator
1739	 46.81	0	1781542..1782780	-	412	56552635	-	ZMO1739	-	two-component signal transduction histidine kinase
1740	 52.75	+1	1782925..1783197	-	90	56552636	-	ZMO1740	-	hypothetical protein
1741	 48.31	0	1783250..1785058	-	602	56552637	-	ZMO1741	-	GTP-binding protein LepA
1742	 44.19	0	1785049..1785177	+	42	56552638	-	ZMO1742	-	hypothetical protein
1743	 48.73	0	1785164..1786072	-	302	56552639	apaH	ZMO1743	-	diadenosine tetraphosphatase
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.