IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1598	 52.04	+1	1636224..1638206	+	660	56552494	dxs	ZMO1598	-	1-deoxy-D-xylulose-5-phosphate synthase
1599	 49.43	0	1638299..1640908	+	869	56552495	-	ZMO1599	-	RND superfamily multidrug efflux system protein
1600	 46.63	0	1641142..1642104	+	320	56552496	thrB	ZMO1600	-	homoserine kinase
1601	 49.47	0	1642109..1642579	+	156	56552497	rnhA	ZMO1601	-	ribonuclease H
1602	 44.86	0	1642720..1644177	+	485	56552498	-	ZMO1602	-	hypothetical protein
1603	 49.44	0	1644461..1644907	+	148	56552499	-	ZMO1603	-	hypothetical protein
1604	 49.15	0	1644943..1646232	-	429	56552500	-	ZMO1604	-	phosphodiesterase-nucleotide pyrophosphatase
1605	 50.76	0	1646347..1647735	-	462	56552501	pdhB	ZMO1605	-	pyruvate dehydrogenase subunit beta
1606	 50.99	0	1647737..1648801	-	354	56552502	pdhA	ZMO1606	-	pyruvate dehydrogenase E1 component alpha subunit
1607	 48.24	0	1649168..1649536	-	122	56552503	-	ZMO1607	-	hypothetical protein
1608	 51.09	0	1649577..1650866	-	429	56552504	eno	ZMO1608	-	enolase
1609	 42.86	0	1651068..1651697	+	209	56552505	-	ZMO1609	-	hypothetical protein
1610	 49.04	0	1651700..1652221	+	173	56552506	-	ZMO1610	-	hypothetical protein
1611	 46.43	0	1652276..1652611	+	111	56552507	-	ZMO1611	-	hypothetical protein
1612	 46.50	0	1652869..1653453	+	194	56552508	-	ZMO1612	-	hypothetical protein
1613	 44.74	0	1653595..1653708	+	37	56552509	-	ZMO1613	-	hypothetical protein
1614	 46.17	0	1653793..1654431	-	212	56552510	-	ZMO1614	-	hypothetical protein
1615	 46.76	0	1654448..1654879	-	143	56552511	greA	ZMO1615	-	transcription elongation factor
1616	 42.28	0	1654866..1654988	-	40	56552512	-	ZMO1616	-	hypothetical protein
1617	 50.76	0	1657491..1658345	-	284	56552513	carB	ZMO1617	-	carbamoyl-phosphate synthase large chain
1618	 52.51	+1	1658413..1659585	-	390	56552514	carA	ZMO1618	-	carbamoyl phosphate synthase small subunit
1619	 45.71	0	1659771..1660295	+	174	56552515	-	ZMO1619	-	hypothetical protein
1620	 27.93	-2	1660596..1660706	-	36	56552516	-	ZMO1620	-	hypothetical protein
1621	 42.64	0	1660966..1661223	+	85	56552517	-	ZMO1621	-	hypothetical protein
1622	 52.54	+1	1661223..1662284	+	353	56552518	dnaG	ZMO1622	-	DNA primase
1623	 48.26	0	1663111..1665126	+	671	56552519	rpoD	ZMO1623	-	RNA polymerase sigma factor RpoD
1624	 51.88	+1	1665211..1666725	-	504	56552520	-	ZMO1624	-	ATPase
1625	 53.98	+1	1666996..1667460	+	154	56552521	rnpA	ZMO1625	-	ribonuclease P protein component
1626	 46.03	0	1667687..1669426	+	579	56552522	-	ZMO1626	-	putative inner membrane protein translocase component YidC
1627	 46.48	0	1669435..1670073	+	212	56552523	-	ZMO1627	-	GTPase EngB
1628	 44.25	0	1670140..1671192	-	350	56552524	-	ZMO1628	-	uncharacterized iron-regulated membrane protein
1629	 47.33	0	1671708..1672007	-	99	56552525	-	ZMO1629	-	hypothetical protein
1630	 43.75	0	1672004..1672291	-	95	56552526	-	ZMO1630	-	hypothetical protein
1631	 49.30	0	1672273..1674564	-	763	56552527	-	ZMO1631	-	TonB-dependent receptor
1632	 48.72	0	1674853..1675983	+	376	56552528	dapE	ZMO1632	-	succinyl-diaminopimelate desuccinylase
1633	 39.76	-1	1676039..1676365	-	108	56552529	-	ZMO1633	-	hypothetical protein
1634	 49.05	0	1676430..1677116	-	228	56552530	-	ZMO1634	-	hypothetical protein
1635	 39.48	-1	1678390..1678698	-	102	56552531	mltA	ZMO1635	-	lytic murein transglycosylase
1636	 49.69	0	1678740..1679393	-	217	56552532	-	ZMO1636	-	hypothetical protein
1637	 38.64	-1	1679466..1679597	+	43	56552533	-	ZMO1637	-	hypothetical protein
1638	 47.47	0	1679860..1680354	+	164	56552534	secB	ZMO1638	-	preprotein translocase subunit
1639	 48.57	0	1680439..1682052	+	537	56552535	-	ZMO1639	-	uncharacterized membrane protein
1640	 47.51	0	1682076..1683098	+	340	56552536	trpS	ZMO1640	-	tryptophanyl-tRNA synthetase
1641	 53.24	+1	1683217..1683879	+	220	56552537	-	ZMO1641	-	hypothetical protein
1642	 48.34	0	1683950..1685095	-	381	56552538	anmK	ZMO1642	-	anhydro-N-acetylmuramic acid kinase
1643	 48.21	0	1685213..1686442	+	409	56552539	tyrS	ZMO1643	-	tyrosyl-tRNA synthetase
1644	 50.07	0	1686502..1688580	-	692	56552540	-	ZMO1644	-	DNA helicase
1645	 42.59	0	1688665..1688880	+	71	56552541	-	ZMO1645	-	hypothetical protein
1646	 49.28	0	1688894..1692292	+	1132	56552542	-	ZMO1646	-	transcription-repair coupling factor
1647	 47.64	0	1692548..1693099	-	183	56552543	folK	ZMO1647	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
1648	 46.61	0	1693272..1694009	+	245	56552544	ung	ZMO1648	-	uracil-DNA glycosylase
1649	 49.30	0	1694256..1695326	+	356	56552545	gnl	ZMO1649	-	gluconolactonase
1650	 46.75	0	1695701..1696684	+	327	56552546	-	ZMO1650	-	class C beta-lactamase
1651	 50.63	0	1696779..1699067	-	762	56552547	ptsP	ZMO1651	-	phosphoenolpyruvate-protein phosphotransferase
1652	 52.02	+1	1699084..1700073	-	329	56552548	-	ZMO1652	-	dioxygenase
1653	 51.65	0	1700160..1701431	-	423	56552549	lysC	ZMO1653	-	aspartate kinase
1654	 45.71	0	1701505..1702296	+	263	56552550	ubiG	ZMO1654	-	3-demethylubiquinone-9 3-methyltransferase
1655	 46.77	0	1702381..1702938	+	185	56552551	-	ZMO1655	-	putative bacterioferritin comigratory protein
1656	 47.02	0	1703125..1704030	+	301	56552552	-	ZMO1656	-	hypothetical protein
1657	 50.61	0	1704214..1705284	+	356	56552553	-	ZMO1657	-	hypothetical protein
1658	 50.30	0	1705340..1706329	+	329	56552554	-	ZMO1658	-	ATPase
1659	 49.48	0	1706551..1708464	+	637	56552555	ftsH	ZMO1659	-	ATP-dependent Zn protease
1660	 49.28	0	1708591..1709004	+	137	56552556	-	ZMO1660	-	hypothetical protein
1661	 50.97	0	1709055..1710341	+	428	56552557	proA	ZMO1661	-	gamma-glutamyl phosphate reductase
1662	 50.63	0	1710399..1711034	+	211	56552558	nadD	ZMO1662	-	nicotinic acid mononucleotide adenylyltransferase
1663	 46.02	0	1711043..1711444	+	133	56552559	-	ZMO1663	-	hypothetical protein
1664	 53.15	+1	1711516..1711944	+	142	56552560	-	ZMO1664	-	hypothetical protein
1665	 44.02	0	1711944..1713131	+	395	56552561	-	ZMO1665	-	membrane-bound metallopeptidase
1666	 44.44	0	1713168..1713320	-	50	56552562	-	ZMO1666	-	hypothetical protein
1667	 46.40	0	1713304..1714650	+	448	56552563	ctpA	ZMO1667	-	periplasmic protease
1668	 43.89	0	1714683..1715288	+	201	56552564	dsbB	ZMO1668	-	disulfide bond formation protein
1669	 47.67	0	1715258..1715815	+	185	56552565	-	ZMO1669	-	ubiquinone biosynthesis protein
1670	 45.83	0	1715822..1716253	+	143	56552566	-	ZMO1670	-	hypothetical protein
1671	 52.14	+1	1716363..1716782	+	139	56552567	-	ZMO1671	-	hypothetical protein
1672	 47.92	0	1716917..1717396	+	159	56552568	-	ZMO1672	-	hypothetical protein
1673	 47.69	0	1717504..1718325	-	273	56552569	-	ZMO1673	-	putative oxidoreductase
1674	 45.74	0	1718356..1718484	-	42	56552570	-	ZMO1674	-	hypothetical protein
1675	 48.25	0	1718509..1719279	-	256	56552571	-	ZMO1675	-	protein-disulfide isomerase
1676	 46.85	0	1719530..1720180	-	216	56552572	-	ZMO1676	-	hypothetical protein
1677	 48.75	0	1720215..1721336	+	373	56552573	mutY	ZMO1677	-	A/G-specific DNA glycosylase
1678	 51.37	0	1721340..1722254	-	304	56552574	pheA	ZMO1678	-	prephenate dehydratase
1679	 45.96	0	1722350..1723228	-	292	56552575	-	ZMO1679	-	Rossmann fold nucleotide-binding protein
1680	 47.51	0	1723271..1723933	-	220	56552576	-	ZMO1680	-	hypothetical protein
1681	 49.32	0	1724393..1726087	+	564	56552577	-	ZMO1681	-	aspartate:alanine antiporter
1682	 47.65	0	1726117..1727709	+	530	56552578	asdA	ZMO1682	-	aspartate aminotransferase
1683	 48.23	0	1727805..1728905	+	366	56552579	ansA	ZMO1683	-	periplasmic L-asparaginase II
1684	 50.56	0	1729367..1730527	+	386	56552580	serC	ZMO1684	-	phosphoserine aminotransferase
1685	 49.49	0	1730599..1732182	+	527	56552581	serA	ZMO1685	-	D-3-phosphoglycerate dehydrogenase
1686	 50.45	0	1732379..1733494	+	371	56552582	hisG	ZMO1686	-	ATP phosphoribosyltransferase
1687	 51.86	+1	1733559..1734848	+	429	56552583	purA	ZMO1687	-	adenylosuccinate synthetase
1688	 47.88	0	1734938..1735762	-	274	56552584	-	ZMO1688	-	aminomethyltransferase
1689	 49.14	0	1735806..1737146	+	446	56552585	pyrC	ZMO1689	-	dihydroorotase
1690	 52.12	+1	1737595..1738536	+	313	56552586	-	ZMO1690	-	DnaJ-class molecular chaperone
1691	 44.67	0	1738817..1739839	+	340	56552587	-	ZMO1691	-	hypothetical protein
1692	 48.35	0	1739850..1740668	+	272	56552588	fabI	ZMO1692	-	enoyl-[acyl-carrier-protein] reductase
1693	 53.30	+1	1740665..1741741	+	358	56552589	aroC	ZMO1693	-	chorismate synthase
1694	 48.89	0	1741820..1744300	-	826	56552590	-	ZMO1694	-	TonB-dependent receptor
1695	 46.67	0	1744564..1745103	-	179	56552591	-	ZMO1695	-	hypothetical protein
1696	 47.00	0	1745261..1746277	-	338	56552592	-	ZMO1696	-	alginate lyase
1697	 42.61	0	1746392..1746736	+	114	56552593	-	ZMO1697	-	hypothetical protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.