IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1543	 50.78	0	1574633..1576495	-	620	56552439	cobT	ZMO1543	-	cobalamin biosynthesis protein
1544	 49.49	0	1576502..1577485	-	327	56552440	cobS	ZMO1544	-	MoxR-like ATPase
1545	 51.92	+1	1577514..1578137	-	207	56552441	-	ZMO1545	-	DnaJ-class molecular chaperone
1546	 49.85	0	1577687..1578334	-	215	56552442	-	ZMO1546	-	DnaJ-class molecular chaperone
1547	 50.26	0	1578272..1578838	+	188	56552443	-	ZMO1547	-	transcriptional regulator
1548	 50.05	0	1578854..1581031	+	725	56552444	shc	ZMO1548	-	squalene--hopene cyclase
1549	 49.35	0	1581396..1581701	+	101	56552445	bolA	ZMO1549	-	hypothetical protein
1550	 51.57	0	1581790..1582458	+	222	56552446	hisG	ZMO1550	-	ATP phosphoribosyltransferase catalytic subunit
1551	 52.35	+1	1582700..1583740	+	346	56552447	hisD	ZMO1551	-	histidinol dehydrogenase
1552	 45.64	0	1583824..1584213	+	129	56552448	-	ZMO1552	-	transcription termination factor
1553	 49.38	0	1584226..1585197	+	323	56552449	thiL	ZMO1553	-	thiamine-monophosphate kinase
1554	 48.77	0	1585506..1586276	+	256	56552450	-	ZMO1554	-	hypothetical protein
1555	 47.01	0	1586326..1586442	-	38	56552451	-	ZMO1555	-	hypothetical protein
1556	 46.36	0	1586582..1587970	+	462	56552452	gsh	ZMO1556	-	gamma-glutamylcysteine synthetase
1557	 50.29	0	1588393..1589919	+	508	56552453	purF	ZMO1557	-	amidophosphoribosyltransferase
1558	 30.08	-2	1590247..1590369	+	40	56552454	-	ZMO1558	-	hypothetical protein
1559	 35.96	-1	1590908..1591021	-	37	56552455	-	ZMO1559	-	hypothetical protein
1560	 33.33	-2	1591103..1591222	-	39	56552456	-	ZMO1560	-	hypothetical protein
1561	 51.06	0	1591364..1592068	+	234	56552457	-	ZMO1561	-	dehydrogenase
1562	 43.16	0	1592135..1592602	+	155	56552458	-	ZMO1562	-	NTP pyrophosphohydrolase
1563	 46.99	0	1592747..1593610	+	287	56552459	-	ZMO1563	-	putative salt-induced outer membrane protein
1564	 43.56	0	1593835..1594401	-	188	56552460	-	ZMO1564	-	putative nicotinamide mononucleotide transporter
1565	 48.04	0	1594481..1594582	+	33	56552461	-	ZMO1565	-	hypothetical protein
1566	 46.91	0	1594871..1595194	+	107	56552462	-	ZMO1566	-	hypothetical protein
1567	 45.30	0	1596024..1596374	-	116	56552463	-	ZMO1567	-	hypothetical protein
1568	 47.59	0	1596387..1598126	-	579	56552464	-	ZMO1568	-	TonB-dependent receptor
1569	 50.68	0	1598969..1599781	-	270	56552465	pflA	ZMO1569	-	pyruvate-formate lyase activating enzyme
1570	 49.57	0	1599744..1602059	-	771	56552466	pfl	ZMO1570	-	formate acetyltransferase
1571	 49.62	0	1602823..1604253	+	476	56552467	cydA	ZMO1571	-	cytochrome bd-type quinol oxidase subunit 1
1572	 50.83	0	1604260..1605282	+	340	56552468	cydB	ZMO1572	-	cytochrome bd-type quinol oxidase subunit 2
1573	 44.95	0	1605592..1606521	+	309	56552469	-	ZMO1573	-	iron-dependent peroxidase
1574	 43.23	0	1606647..1607555	+	302	56552470	-	ZMO1574	-	transcriptional regulatory protein
1575	 38.46	-1	1607654..1607770	+	38	56552471	-	ZMO1575	-	hypothetical protein
1576	 47.26	0	1607748..1608494	+	248	56552472	-	ZMO1576	-	short-chain alcohol dehydrogenase
1577	 46.68	0	1608752..1609972	+	406	56552473	opdE	ZMO1577	-	arabinose efflux permease
1578	 47.58	0	1610019..1610783	+	254	56552474	-	ZMO1578	-	dehydrogenase
1579	 41.71	0	1610847..1611968	+	373	56552475	-	ZMO1579	-	alpha/beta hydrolase superfamily protein
1580	 53.33	+1	1616983..1617117	+	44	56552476	-	ZMO1580	-	hypothetical protein
1581	 48.82	0	1618669..1618965	+	98	56552477	-	ZMO1581	-	hypothetical protein
1582	 45.33	0	1619013..1619504	-	163	56552478	-	ZMO1582	-	G:T/U mismatch-specific DNA glycosylase
1583	 50.10	0	1619888..1622326	-	812	56552479	gyrB	ZMO1583	-	type IIA topoisomerase B subunit
1584	 51.11	0	1622469..1623599	-	376	56552480	recF	ZMO1584	-	recombination protein F
1585	 34.03	-2	1623571..1623714	-	47	56552481	-	ZMO1585	-	hypothetical protein
1586	 44.73	0	1623714..1624187	+	157	56552482	bfr	ZMO1586	-	bacterioferritin
1587	 46.33	0	1624274..1624627	+	117	56552483	-	ZMO1587	-	hypothetical protein
1588	 48.47	0	1624785..1627625	+	946	56552484	uvrA	ZMO1588	-	excinuclease ABC subunit A
1589	 33.66	-2	1627796..1628725	+	309	56552485	-	ZMO1589	-	hypothetical protein
1590	 49.21	0	1628836..1629597	-	253	56552486	-	ZMO1590	-	ABC-type transport system ATPase component
1591	 49.48	0	1629606..1630367	-	253	56552487	-	ZMO1591	-	ABC-type transport system permease component
1592	 50.48	0	1630428..1631477	-	349	56552488	alr	ZMO1592	-	alanine racemase
1593	 48.68	0	1631561..1633495	-	644	56552489	-	ZMO1593	-	protease
1594	 32.88	-2	1633543..1633764	-	73	56552490	-	ZMO1594	-	hypothetical protein
1595	 42.53	0	1633821..1633994	+	57	56552491	-	ZMO1595	-	hypothetical protein
1596	 50.00	0	1634679..1635830	+	383	56552492	adhB	ZMO1596	-	alcohol dehydrogenase II
1597	 42.69	0	1635986..1636156	+	56	56552493	-	ZMO1597	-	hypothetical protein
1598	 52.04	+1	1636224..1638206	+	660	56552494	dxs	ZMO1598	-	1-deoxy-D-xylulose-5-phosphate synthase
1599	 49.43	0	1638299..1640908	+	869	56552495	-	ZMO1599	-	RND superfamily multidrug efflux system protein
1600	 46.63	0	1641142..1642104	+	320	56552496	thrB	ZMO1600	-	homoserine kinase
1601	 49.47	0	1642109..1642579	+	156	56552497	rnhA	ZMO1601	-	ribonuclease H
1602	 44.86	0	1642720..1644177	+	485	56552498	-	ZMO1602	-	hypothetical protein
1603	 49.44	0	1644461..1644907	+	148	56552499	-	ZMO1603	-	hypothetical protein
1604	 49.15	0	1644943..1646232	-	429	56552500	-	ZMO1604	-	phosphodiesterase-nucleotide pyrophosphatase
1605	 50.76	0	1646347..1647735	-	462	56552501	pdhB	ZMO1605	-	pyruvate dehydrogenase subunit beta
1606	 50.99	0	1647737..1648801	-	354	56552502	pdhA	ZMO1606	-	pyruvate dehydrogenase E1 component alpha subunit
1607	 48.24	0	1649168..1649536	-	122	56552503	-	ZMO1607	-	hypothetical protein
1608	 51.09	0	1649577..1650866	-	429	56552504	eno	ZMO1608	-	enolase
1609	 42.86	0	1651068..1651697	+	209	56552505	-	ZMO1609	-	hypothetical protein
1610	 49.04	0	1651700..1652221	+	173	56552506	-	ZMO1610	-	hypothetical protein
1611	 46.43	0	1652276..1652611	+	111	56552507	-	ZMO1611	-	hypothetical protein
1612	 46.50	0	1652869..1653453	+	194	56552508	-	ZMO1612	-	hypothetical protein
1613	 44.74	0	1653595..1653708	+	37	56552509	-	ZMO1613	-	hypothetical protein
1614	 46.17	0	1653793..1654431	-	212	56552510	-	ZMO1614	-	hypothetical protein
1615	 46.76	0	1654448..1654879	-	143	56552511	greA	ZMO1615	-	transcription elongation factor
1616	 42.28	0	1654866..1654988	-	40	56552512	-	ZMO1616	-	hypothetical protein
1617	 50.76	0	1657491..1658345	-	284	56552513	carB	ZMO1617	-	carbamoyl-phosphate synthase large chain
1618	 52.51	+1	1658413..1659585	-	390	56552514	carA	ZMO1618	-	carbamoyl phosphate synthase small subunit
1619	 45.71	0	1659771..1660295	+	174	56552515	-	ZMO1619	-	hypothetical protein
1620	 27.93	-2	1660596..1660706	-	36	56552516	-	ZMO1620	-	hypothetical protein
1621	 42.64	0	1660966..1661223	+	85	56552517	-	ZMO1621	-	hypothetical protein
1622	 52.54	+1	1661223..1662284	+	353	56552518	dnaG	ZMO1622	-	DNA primase
1623	 48.26	0	1663111..1665126	+	671	56552519	rpoD	ZMO1623	-	RNA polymerase sigma factor RpoD
1624	 51.88	+1	1665211..1666725	-	504	56552520	-	ZMO1624	-	ATPase
1625	 53.98	+1	1666996..1667460	+	154	56552521	rnpA	ZMO1625	-	ribonuclease P protein component
1626	 46.03	0	1667687..1669426	+	579	56552522	-	ZMO1626	-	putative inner membrane protein translocase component YidC
1627	 46.48	0	1669435..1670073	+	212	56552523	-	ZMO1627	-	GTPase EngB
1628	 44.25	0	1670140..1671192	-	350	56552524	-	ZMO1628	-	uncharacterized iron-regulated membrane protein
1629	 47.33	0	1671708..1672007	-	99	56552525	-	ZMO1629	-	hypothetical protein
1630	 43.75	0	1672004..1672291	-	95	56552526	-	ZMO1630	-	hypothetical protein
1631	 49.30	0	1672273..1674564	-	763	56552527	-	ZMO1631	-	TonB-dependent receptor
1632	 48.72	0	1674853..1675983	+	376	56552528	dapE	ZMO1632	-	succinyl-diaminopimelate desuccinylase
1633	 39.76	-1	1676039..1676365	-	108	56552529	-	ZMO1633	-	hypothetical protein
1634	 49.05	0	1676430..1677116	-	228	56552530	-	ZMO1634	-	hypothetical protein
1635	 39.48	-1	1678390..1678698	-	102	56552531	mltA	ZMO1635	-	lytic murein transglycosylase
1636	 49.69	0	1678740..1679393	-	217	56552532	-	ZMO1636	-	hypothetical protein
1637	 38.64	-1	1679466..1679597	+	43	56552533	-	ZMO1637	-	hypothetical protein
1638	 47.47	0	1679860..1680354	+	164	56552534	secB	ZMO1638	-	preprotein translocase subunit
1639	 48.57	0	1680439..1682052	+	537	56552535	-	ZMO1639	-	uncharacterized membrane protein
1640	 47.51	0	1682076..1683098	+	340	56552536	trpS	ZMO1640	-	tryptophanyl-tRNA synthetase
1641	 53.24	+1	1683217..1683879	+	220	56552537	-	ZMO1641	-	hypothetical protein
1642	 48.34	0	1683950..1685095	-	381	56552538	anmK	ZMO1642	-	anhydro-N-acetylmuramic acid kinase
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.