IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1503	 46.70	0	1528117..1528737	-	206	56552399	hisB	ZMO1503	-	imidazoleglycerol-phosphate dehydratase
1504	 47.56	0	1528795..1529286	+	163	56552400	-	ZMO1504	-	hypothetical protein
1505	 38.17	-1	1529317..1529502	+	61	56552401	-	ZMO1505	-	hypothetical protein
1506	 49.26	0	1529509..1529847	+	112	56552402	-	ZMO1506	-	hypothetical protein
1507	 46.63	0	1529918..1530451	-	177	56552403	ppa	ZMO1507	-	inorganic pyrophosphatase
1508	 38.78	-1	1530657..1530803	+	48	56552404	hisS	ZMO1508	-	histidyl-tRNA synthetase
1509	 49.30	0	1531912..1532988	+	358	56552405	prfA	ZMO1509	-	protein chain release factor A
1510	 46.27	0	1532945..1533841	+	298	56552406	-	ZMO1510	-	protein chain release factors methylase subunit
1511	 49.63	0	1534152..1535225	+	357	56552407	-	ZMO1511	-	hypothetical protein
1512	 42.51	0	1535287..1537074	-	595	56552408	-	ZMO1512	-	ABC-type transport system ATPase components
1513	 50.00	0	1537151..1539520	-	789	56552409	pheT	ZMO1513	-	phenylalanyl-tRNA synthetase subunit beta
1514	 49.77	0	1539517..1540617	-	366	56552410	pheS	ZMO1514	-	phenylalanyl-tRNA synthetase alpha subunit
1515	 50.79	0	1540906..1541283	-	125	56552411	rplT	ZMO1515	-	50S ribosomal protein L20
1516	 48.04	0	1541297..1541500	-	67	56552412	rpmI	ZMO1516	-	50S ribosomal protein L35
1517	 46.91	0	1541457..1541618	-	53	56552413	-	ZMO1517	-	hypothetical protein
1518	 47.44	0	1541646..1542425	-	259	56552414	cbbF	ZMO1518	-	fructose-1,6-bisphosphatase
1519	 48.61	0	1542471..1543406	-	311	56552415	prsA	ZMO1519	-	ribose-phosphate pyrophosphokinase
1520	 41.56	0	1543611..1543841	-	76	56552416	-	ZMO1520	-	hypothetical protein
1521	 38.69	-1	1543990..1544568	-	192	56552417	-	ZMO1521	-	hypothetical protein
1522	 44.42	0	1544960..1548106	+	1048	56552418	-	ZMO1522	-	hypothetical protein
1523	 41.67	0	1548378..1548485	-	35	56552419	-	ZMO1523	-	hypothetical protein
1524	 43.87	0	1548492..1549421	+	309	56552420	-	ZMO1524	-	hypothetical protein
1525	 48.64	0	1549489..1552584	-	1031	56552421	-	ZMO1525	-	outer membrane protein
1526	 52.85	+1	1552675..1552797	-	40	56552422	-	ZMO1526	-	hypothetical protein
1527	 50.09	0	1552727..1556026	-	1099	56552423	-	ZMO1527	-	cation/multidrug efflux pump
1528	 50.53	0	1556023..1559121	-	1032	56552424	-	ZMO1528	-	cation/multidrug efflux pump
1529	 49.77	0	1559161..1560456	-	431	56552425	-	ZMO1529	-	RND efflux membrane fusion protein
1530	 49.36	0	1560938..1561948	+	336	56552426	-	ZMO1530	-	hypothetical protein
1531	 47.44	0	1562121..1562354	+	77	56552427	purS	ZMO1531	-	phosphoribosylformylglycinamidine synthase small subunit
1532	 50.45	0	1562354..1563019	+	221	56552428	purQ	ZMO1532	-	phosphoribosylformylglycinamidine synthase large subunit
1533	 45.81	0	1563462..1564046	+	194	56552429	-	ZMO1533	-	hypothetical protein
1534	 39.17	-1	1564166..1564285	-	39	56552430	-	ZMO1534	-	hypothetical protein
1535	 42.57	0	1564380..1564682	+	100	56552431	-	ZMO1535	-	hypothetical protein
1536	 27.76	-2	1565172..1566839	-	555	56552432	-	ZMO1536	-	ATPase
1537	 44.44	0	1567590..1567697	-	35	56552433	-	ZMO1537	-	hypothetical protein
1538	 51.20	0	1567772..1571146	-	1124	56552434	dnaE	ZMO1538	-	DNA polymerase III alpha subunit
1539	 33.33	-2	1571503..1571634	+	43	56552435	-	ZMO1539	-	hypothetical protein
1540	 49.17	0	1571649..1571951	+	100	56552436	feoA	ZMO1540	-	Fe2+ transport system protein A
1541	 49.53	0	1571957..1573882	+	641	56552437	feoB	ZMO1541	-	Fe2+ transport system protein B
1542	 50.52	0	1573978..1574559	+	193	56552438	ssb	ZMO1542	-	single-strand DNA binding protein
1543	 50.78	0	1574633..1576495	-	620	56552439	cobT	ZMO1543	-	cobalamin biosynthesis protein
1544	 49.49	0	1576502..1577485	-	327	56552440	cobS	ZMO1544	-	MoxR-like ATPase
1545	 51.92	+1	1577514..1578137	-	207	56552441	-	ZMO1545	-	DnaJ-class molecular chaperone
1546	 49.85	0	1577687..1578334	-	215	56552442	-	ZMO1546	-	DnaJ-class molecular chaperone
1547	 50.26	0	1578272..1578838	+	188	56552443	-	ZMO1547	-	transcriptional regulator
1548	 50.05	0	1578854..1581031	+	725	56552444	shc	ZMO1548	-	squalene--hopene cyclase
1549	 49.35	0	1581396..1581701	+	101	56552445	bolA	ZMO1549	-	hypothetical protein
1550	 51.57	0	1581790..1582458	+	222	56552446	hisG	ZMO1550	-	ATP phosphoribosyltransferase catalytic subunit
1551	 52.35	+1	1582700..1583740	+	346	56552447	hisD	ZMO1551	-	histidinol dehydrogenase
1552	 45.64	0	1583824..1584213	+	129	56552448	-	ZMO1552	-	transcription termination factor
1553	 49.38	0	1584226..1585197	+	323	56552449	thiL	ZMO1553	-	thiamine-monophosphate kinase
1554	 48.77	0	1585506..1586276	+	256	56552450	-	ZMO1554	-	hypothetical protein
1555	 47.01	0	1586326..1586442	-	38	56552451	-	ZMO1555	-	hypothetical protein
1556	 46.36	0	1586582..1587970	+	462	56552452	gsh	ZMO1556	-	gamma-glutamylcysteine synthetase
1557	 50.29	0	1588393..1589919	+	508	56552453	purF	ZMO1557	-	amidophosphoribosyltransferase
1558	 30.08	-2	1590247..1590369	+	40	56552454	-	ZMO1558	-	hypothetical protein
1559	 35.96	-1	1590908..1591021	-	37	56552455	-	ZMO1559	-	hypothetical protein
1560	 33.33	-2	1591103..1591222	-	39	56552456	-	ZMO1560	-	hypothetical protein
1561	 51.06	0	1591364..1592068	+	234	56552457	-	ZMO1561	-	dehydrogenase
1562	 43.16	0	1592135..1592602	+	155	56552458	-	ZMO1562	-	NTP pyrophosphohydrolase
1563	 46.99	0	1592747..1593610	+	287	56552459	-	ZMO1563	-	putative salt-induced outer membrane protein
1564	 43.56	0	1593835..1594401	-	188	56552460	-	ZMO1564	-	putative nicotinamide mononucleotide transporter
1565	 48.04	0	1594481..1594582	+	33	56552461	-	ZMO1565	-	hypothetical protein
1566	 46.91	0	1594871..1595194	+	107	56552462	-	ZMO1566	-	hypothetical protein
1567	 45.30	0	1596024..1596374	-	116	56552463	-	ZMO1567	-	hypothetical protein
1568	 47.59	0	1596387..1598126	-	579	56552464	-	ZMO1568	-	TonB-dependent receptor
1569	 50.68	0	1598969..1599781	-	270	56552465	pflA	ZMO1569	-	pyruvate-formate lyase activating enzyme
1570	 49.57	0	1599744..1602059	-	771	56552466	pfl	ZMO1570	-	formate acetyltransferase
1571	 49.62	0	1602823..1604253	+	476	56552467	cydA	ZMO1571	-	cytochrome bd-type quinol oxidase subunit 1
1572	 50.83	0	1604260..1605282	+	340	56552468	cydB	ZMO1572	-	cytochrome bd-type quinol oxidase subunit 2
1573	 44.95	0	1605592..1606521	+	309	56552469	-	ZMO1573	-	iron-dependent peroxidase
1574	 43.23	0	1606647..1607555	+	302	56552470	-	ZMO1574	-	transcriptional regulatory protein
1575	 38.46	-1	1607654..1607770	+	38	56552471	-	ZMO1575	-	hypothetical protein
1576	 47.26	0	1607748..1608494	+	248	56552472	-	ZMO1576	-	short-chain alcohol dehydrogenase
1577	 46.68	0	1608752..1609972	+	406	56552473	opdE	ZMO1577	-	arabinose efflux permease
1578	 47.58	0	1610019..1610783	+	254	56552474	-	ZMO1578	-	dehydrogenase
1579	 41.71	0	1610847..1611968	+	373	56552475	-	ZMO1579	-	alpha/beta hydrolase superfamily protein
1580	 53.33	+1	1616983..1617117	+	44	56552476	-	ZMO1580	-	hypothetical protein
1581	 48.82	0	1618669..1618965	+	98	56552477	-	ZMO1581	-	hypothetical protein
1582	 45.33	0	1619013..1619504	-	163	56552478	-	ZMO1582	-	G:T/U mismatch-specific DNA glycosylase
1583	 50.10	0	1619888..1622326	-	812	56552479	gyrB	ZMO1583	-	type IIA topoisomerase B subunit
1584	 51.11	0	1622469..1623599	-	376	56552480	recF	ZMO1584	-	recombination protein F
1585	 34.03	-2	1623571..1623714	-	47	56552481	-	ZMO1585	-	hypothetical protein
1586	 44.73	0	1623714..1624187	+	157	56552482	bfr	ZMO1586	-	bacterioferritin
1587	 46.33	0	1624274..1624627	+	117	56552483	-	ZMO1587	-	hypothetical protein
1588	 48.47	0	1624785..1627625	+	946	56552484	uvrA	ZMO1588	-	excinuclease ABC subunit A
1589	 33.66	-2	1627796..1628725	+	309	56552485	-	ZMO1589	-	hypothetical protein
1590	 49.21	0	1628836..1629597	-	253	56552486	-	ZMO1590	-	ABC-type transport system ATPase component
1591	 49.48	0	1629606..1630367	-	253	56552487	-	ZMO1591	-	ABC-type transport system permease component
1592	 50.48	0	1630428..1631477	-	349	56552488	alr	ZMO1592	-	alanine racemase
1593	 48.68	0	1631561..1633495	-	644	56552489	-	ZMO1593	-	protease
1594	 32.88	-2	1633543..1633764	-	73	56552490	-	ZMO1594	-	hypothetical protein
1595	 42.53	0	1633821..1633994	+	57	56552491	-	ZMO1595	-	hypothetical protein
1596	 50.00	0	1634679..1635830	+	383	56552492	adhB	ZMO1596	-	alcohol dehydrogenase II
1597	 42.69	0	1635986..1636156	+	56	56552493	-	ZMO1597	-	hypothetical protein
1598	 52.04	+1	1636224..1638206	+	660	56552494	dxs	ZMO1598	-	1-deoxy-D-xylulose-5-phosphate synthase
1599	 49.43	0	1638299..1640908	+	869	56552495	-	ZMO1599	-	RND superfamily multidrug efflux system protein
1600	 46.63	0	1641142..1642104	+	320	56552496	thrB	ZMO1600	-	homoserine kinase
1601	 49.47	0	1642109..1642579	+	156	56552497	rnhA	ZMO1601	-	ribonuclease H
1602	 44.86	0	1642720..1644177	+	485	56552498	-	ZMO1602	-	hypothetical protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.