IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1416	 37.98	-1	1427040..1427168	+	42	56552312	-	ZMO1416	-	hypothetical protein
1417	 52.94	+1	1427547..1428923	+	458	56552313	-	ZMO1417	-	DNA and RNA helicase
1418	 46.81	0	1429259..1429399	-	46	56552314	-	ZMO1418	-	hypothetical protein
1419	 48.07	0	1429482..1430438	-	318	56552315	ubiA	ZMO1419	-	prenyltransferase
1420	 50.56	0	1430675..1431214	+	179	56552316	purE	ZMO1420	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1421	 47.11	0	1431211..1432299	+	362	56552317	purK	ZMO1421	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1422	 50.19	0	1432377..1435283	-	968	56552318	-	ZMO1422	-	Zn-dependent peptidase
1423	 48.34	0	1435414..1438191	-	925	56552319	-	ZMO1423	-	Zn-dependent peptidase
1424	 49.87	0	1438454..1441048	+	864	56552320	clpB	ZMO1424	-	ATP-dependent Clp protease
1425	 45.01	0	1441155..1441745	-	196	56552321	thiE	ZMO1425	-	thiamine monophosphate synthase
1426	 40.38	-1	1441905..1442330	+	141	56552322	-	ZMO1426	-	DNA repair protein
1427	 34.69	-2	1442441..1442587	-	48	56552323	-	ZMO1427	-	hypothetical protein
1428	 43.18	0	1442587..1443480	+	297	56552324	-	ZMO1428	-	sphingosine kinase
1429	 50.70	0	1443606..1445309	-	567	56552325	oprM	ZMO1429	-	multidrug efflux pump outer membrane component
1430	 50.55	0	1445306..1446403	-	365	56552326	-	ZMO1430	-	multidrug resistance efflux pump
1431	 42.74	0	1446412..1446645	-	77	56552327	-	ZMO1431	-	hypothetical protein
1432	 48.30	0	1446642..1448672	-	676	56552328	-	ZMO1432	-	hypothetical protein
1433	 43.69	0	1449121..1450134	-	337	56552329	holA	ZMO1433	-	DNA polymerase III delta subunit
1434	 51.09	0	1450144..1450695	-	183	56552330	-	ZMO1434	-	hypothetical protein
1435	 49.82	0	1450755..1453295	-	846	56552331	leuS	ZMO1435	-	leucyl-tRNA synthetase
1436	 50.11	0	1453313..1453753	-	146	56552332	-	ZMO1436	-	hypothetical protein
1437	 44.55	0	1454153..1454785	-	210	56552333	-	ZMO1437	-	hypothetical protein
1438	 43.51	0	1454986..1455447	+	153	56552334	-	ZMO1438	-	transcriptional regulator
1439	 48.14	0	1455450..1456334	-	294	56552335	-	ZMO1439	-	putative hydrolase
1440	 50.30	0	1456294..1457124	-	276	56552336	-	ZMO1440	-	hypothetical protein
1441	 51.39	0	1457593..1458711	+	372	56552337	-	ZMO1441	-	glycine oxidase
1442	 41.89	0	1458759..1459658	-	299	56552338	-	ZMO1442	-	hypothetical protein
1443	 43.04	0	1459840..1461168	+	442	56552339	-	ZMO1443	-	hypothetical protein
1444	 49.83	0	1461544..1463592	-	682	56552340	glyS	ZMO1444	-	glycyl-tRNA synthetase beta subunit
1445	 48.80	0	1463596..1464468	-	290	56552342	glyQ	ZMO1446	-	glycyl-tRNA synthetase subunit alpha
1446	 43.24	0	1464445..1464555	+	36	56552341	-	ZMO1445	-	hypothetical protein
1447	 44.07	0	1464799..1465860	+	353	56552343	-	ZMO1447	-	hypothetical protein
1448	 43.00	0	1466065..1466457	-	130	56552344	-	ZMO1448	-	hypothetical protein
1449	 46.49	0	1466692..1468203	-	503	56552345	sorE	ZMO1449	-	L-sorbose reductase
1450	 42.77	0	1468622..1470031	+	469	56552346	phrB	ZMO1450	-	DNA photolyase
1451	 46.27	0	1470129..1471226	-	365	56552347	-	ZMO1451	-	putative purine nucleoside permease
1452	 48.21	0	1471381..1472610	-	409	56552348	araJ	ZMO1452	-	arabinose efflux permease
1453	 35.19	-2	1472592..1472699	+	35	56552349	-	ZMO1453	-	hypothetical protein
1454	 30.77	-2	1472611..1472766	-	51	56552350	-	ZMO1454	-	hypothetical protein
1455	 46.90	0	1472781..1473377	+	198	56552351	-	ZMO1455	-	transposase
1456	 42.77	0	1473684..1474340	+	218	56552352	-	ZMO1456	-	LysE family efflux protein
1457	 44.68	0	1474414..1475832	+	472	56552353	-	ZMO1457	-	MFS permease
1458	 47.03	0	1475864..1477645	+	593	56552354	-	ZMO1458	-	hypothetical protein
1459	 29.49	-2	1477661..1478284	-	207	56552355	-	ZMO1459	-	putative transport protein
1460	 38.11	-1	1478239..1479117	-	292	56552356	sseA	ZMO1460	-	thiosulfate sulfurtransferase
1461	 40.35	-1	1479119..1480273	-	384	56552357	-	ZMO1461	-	hypothetical protein
1462	 39.55	-1	1480266..1481198	-	310	56552358	-	ZMO1462	-	hypothetical protein
1463	 37.76	-1	1481213..1483021	-	602	56552359	-	ZMO1463	-	TonB-dependent receptor
1464	 40.79	-1	1483757..1483984	-	75	56552360	-	ZMO1464	-	hypothetical protein
1465	 46.20	0	1484217..1485545	-	442	56552361	-	ZMO1465	-	putative transport protein
1466	 45.71	0	1485749..1486540	-	263	56552362	-	ZMO1466	-	oxidoreductase
1467	 41.94	0	1486762..1487586	+	274	56552363	-	ZMO1467	-	ABC-2 transporter
1468	 31.35	-2	1487628..1490051	-	807	56552364	-	ZMO1468	-	hypothetical protein
1469	 28.95	-2	1490405..1490518	+	37	56552365	-	ZMO1469	-	hypothetical protein
1470	 49.82	0	1490501..1491337	-	278	56552366	-	ZMO1470	-	hypothetical protein
1471	 50.72	0	1491624..1493441	-	605	56552367	-	ZMO1471	-	membrane GTPase
1472	 43.33	0	1493400..1493519	+	39	56552368	-	ZMO1472	-	hypothetical protein
1473	 43.22	0	1493885..1494622	+	245	56552369	-	ZMO1473	-	hypothetical protein
1474	 29.71	-2	1494640..1494777	+	45	56552370	-	ZMO1474	-	hypothetical protein
1475	 47.83	0	1495116..1497578	+	820	56552371	-	ZMO1475	-	TonB dependent receptor
1476	 44.75	0	1497814..1498137	+	107	56552372	-	ZMO1476	-	hypothetical protein
1477	 29.42	-2	1498159..1499052	-	297	56552373	-	ZMO1477	-	hypothetical protein
1478	 51.26	0	1499110..1499862	-	250	56552374	pgl	ZMO1478	-	6-phosphogluconolactonase
1479	 50.59	0	1500150..1501082	-	310	56552375	etfA	ZMO1479	-	electron transfer flavoprotein alpha-subunit
1480	 46.67	0	1501079..1501828	-	249	56552376	etfB	ZMO1480	-	electron transfer flavoprotein beta-subunit
1481	 50.04	0	1501891..1503087	-	398	56552377	sucC	ZMO1481	-	succinyl-CoA synthetase beta subunit
1482	 47.52	0	1503619..1506819	-	1066	56552378	-	ZMO1482	-	serine protease
1483	 17.22	-2	1506915..1507094	-	59	56552379	-	ZMO1483	-	hypothetical protein
1484	 47.14	0	1507125..1510268	-	1047	56552380	-	ZMO1484	-	DNA and RNA helicase
1485	 42.80	0	1510373..1511713	+	446	56552381	-	ZMO1485	-	dGTP triphosphohydrolase
1486	 34.88	-2	1511889..1512017	+	42	56552382	-	ZMO1486	-	hypothetical protein
1487	 44.02	0	1512033..1512809	-	258	56552383	-	ZMO1487	-	hypothetical protein
1488	 49.37	0	1512942..1513820	-	292	56552384	kdsA	ZMO1488	-	2-dehydro-3-deoxyphosphooctonate aldolase
1489	 48.56	0	1513837..1514637	-	266	56552385	kdsB	ZMO1489	-	3-deoxy-manno-octulosonate cytidylyltransferase
1490	 51.54	0	1515030..1515644	+	204	56552386	-	ZMO1490	-	putative outer membrane protein
1491	 52.24	+1	1515939..1516742	+	267	56552387	-	ZMO1491	-	putative outer membrane protein
1492	 67.76	+2	1517027..1517209	-	60	56552388	-	ZMO1492	-	hypothetical protein
1493	 45.77	0	1517546..1518124	-	192	56552389	-	ZMO1493	-	hypothetical protein
1494	 47.90	0	1518145..1519050	-	301	56552390	argB	ZMO1494	-	acetylglutamate kinase
1495	 43.86	0	1519196..1519765	-	189	56552391	-	ZMO1495	-	hypothetical protein
1496	 48.83	0	1520273..1522930	+	885	56552392	ppc	ZMO1496	-	phosphoenolpyruvate carboxylase
1497	 46.69	0	1523074..1524570	-	498	56552393	-	ZMO1497	-	amino acid transporter
1498	 44.44	0	1524902..1525279	-	125	56552394	apaH	ZMO1498	-	diadenosine tetraphosphate hydrolase
1499	 45.68	0	1525425..1525748	-	107	56552395	hisE	ZMO1499	-	phosphoribosyl-ATP pyrophosphohydrolase
1500	 53.26	+1	1525853..1526620	-	255	56552396	hisF	ZMO1500	-	imidazole glycerol phosphate synthase subunit HisF
1501	 51.06	0	1526617..1527417	-	266	56552397	hisA	ZMO1501	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1502	 49.42	0	1527474..1528163	-	229	56552398	hisH	ZMO1502	-	imidazole glycerol phosphate synthase subunit HisH
1503	 46.70	0	1528117..1528737	-	206	56552399	hisB	ZMO1503	-	imidazoleglycerol-phosphate dehydratase
1504	 47.56	0	1528795..1529286	+	163	56552400	-	ZMO1504	-	hypothetical protein
1505	 38.17	-1	1529317..1529502	+	61	56552401	-	ZMO1505	-	hypothetical protein
1506	 49.26	0	1529509..1529847	+	112	56552402	-	ZMO1506	-	hypothetical protein
1507	 46.63	0	1529918..1530451	-	177	56552403	ppa	ZMO1507	-	inorganic pyrophosphatase
1508	 38.78	-1	1530657..1530803	+	48	56552404	hisS	ZMO1508	-	histidyl-tRNA synthetase
1509	 49.30	0	1531912..1532988	+	358	56552405	prfA	ZMO1509	-	protein chain release factor A
1510	 46.27	0	1532945..1533841	+	298	56552406	-	ZMO1510	-	protein chain release factors methylase subunit
1511	 49.63	0	1534152..1535225	+	357	56552407	-	ZMO1511	-	hypothetical protein
1512	 42.51	0	1535287..1537074	-	595	56552408	-	ZMO1512	-	ABC-type transport system ATPase components
1513	 50.00	0	1537151..1539520	-	789	56552409	pheT	ZMO1513	-	phenylalanyl-tRNA synthetase subunit beta
1514	 49.77	0	1539517..1540617	-	366	56552410	pheS	ZMO1514	-	phenylalanyl-tRNA synthetase alpha subunit
1515	 50.79	0	1540906..1541283	-	125	56552411	rplT	ZMO1515	-	50S ribosomal protein L20
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.