IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 46.19	0	1360617..1361573	-	318	56552242	-	ZMO1346	-	drug/metabolite transporter
1347	 50.10	0	1361611..1362624	-	337	56552243	ltaE	ZMO1347	-	threonine aldolase
1348	 50.06	0	1362690..1363520	-	276	56552244	map	ZMO1348	-	methionine aminopeptidase
1349	 42.11	0	1363529..1363642	-	37	56552245	-	ZMO1349	-	hypothetical protein
1350	 48.16	0	1363633..1364394	+	253	56552246	-	ZMO1350	-	nucleotide-utilizing enzyme
1351	 47.56	0	1364407..1365411	+	334	56552247	clcD	ZMO1351	-	putative carboxymethylenebutenolidase
1352	 49.08	0	1365503..1366207	-	234	56552248	-	ZMO1352	-	integral membrane protein
1353	 45.81	0	1366463..1367023	-	186	56552249	-	ZMO1353	-	hypothetical protein
1354	 55.34	+1	1367207..1367983	-	258	56552250	-	ZMO1354	-	peptidoglycan-associated protein
1355	 48.55	0	1368723..1370588	-	621	56552251	-	ZMO1355	-	ABC transporter
1356	 48.59	0	1370683..1372137	-	484	56552252	dnaA	ZMO1356	-	chromosomal replication initiator protein
1357	 43.65	0	1372549..1372800	+	83	56552253	-	ZMO1357	-	hypothetical protein
1358	 48.48	0	1372804..1373067	-	87	56552254	rpsT	ZMO1358	-	30S ribosomal protein S20
1359	 33.33	-2	1373148..1373264	+	38	56552255	-	ZMO1359	-	hypothetical protein
1360	 52.37	+1	1373405..1375111	-	568	56552256	pdc	ZMO1360	-	pyruvate decarboxylase
1361	 36.51	-1	1375186..1375374	-	62	56552257	-	ZMO1361	-	hypothetical protein
1362	 46.39	0	1375358..1375648	-	96	56552258	-	ZMO1362	-	hypothetical protein
1363	 36.49	-1	1375810..1376031	+	73	56552259	-	ZMO1363	-	hypothetical protein
1364	 45.67	0	1376059..1377420	+	453	56552260	hemN	ZMO1364	-	coproporphyrinogen III oxidase
1365	 43.56	0	1379200..1380891	+	563	56552261	-	ZMO1365	-	hypothetical protein
1366	 48.78	0	1381072..1381686	+	204	56552262	rpsD	ZMO1366	-	30S ribosomal protein S4
1367	 43.33	0	1381820..1382059	+	79	56552263	-	ZMO1367	-	hypothetical protein
1368	 35.96	-1	1381951..1382064	-	37	56552264	-	ZMO1368	-	hypothetical protein
1369	 49.03	0	1382194..1383174	+	326	56552265	-	ZMO1369	-	peptidylarginine deiminase
1370	 47.70	0	1383186..1384034	+	282	56552266	-	ZMO1370	-	hydrolase
1371	 43.27	0	1384005..1384175	-	56	56552267	-	ZMO1371	-	hypothetical protein
1372	 46.10	0	1384622..1385467	-	281	56552268	-	ZMO1372	-	short chain dehydrogenase
1373	 44.44	0	1385910..1386422	+	170	56552269	-	ZMO1373	-	hypothetical protein
1374	 42.56	0	1386585..1387538	-	317	56552270	-	ZMO1374	-	hypothetical protein
1375	 51.49	0	1387670..1388341	-	223	56552271	rnc	ZMO1375	-	ribonuclease III
1376	 35.04	-2	1388469..1388585	+	38	56552272	-	ZMO1376	-	hypothetical protein
1377	 49.28	0	1388708..1389886	-	392	56552273	-	ZMO1377	-	hypothetical protein
1378	 50.00	0	1390186..1391595	-	469	56552274	eutP	ZMO1378	-	amino acid transporter
1379	 35.09	-2	1391558..1391785	-	75	56552275	-	ZMO1379	-	hypothetical protein
1380	 47.90	0	1391915..1392985	-	356	56552276	-	ZMO1380	-	transcriptional regulatory protein
1381	 48.69	0	1393189..1394373	-	394	56552277	-	ZMO1381	-	hypothetical protein
1382	 49.92	0	1394440..1395759	+	439	56552278	-	ZMO1382	-	putative aminotransferase
1383	 40.20	-1	1395857..1395958	+	33	56552279	-	ZMO1383	-	hypothetical protein
1384	 48.75	0	1395955..1396875	+	306	56552280	era	ZMO1384	-	GTP-binding protein Era
1385	 47.76	0	1396959..1398233	+	424	56552281	-	ZMO1385	-	hypothetical protein
1386	 47.27	0	1398243..1398938	+	231	56552282	-	ZMO1386	-	hypothetical protein
1387	 43.26	0	1399125..1399829	+	234	56552283	-	ZMO1387	-	two-component response regulator
1388	 51.10	0	1399964..1401730	-	588	56552284	ggt	ZMO1388	-	gamma-glutamyltransferase
1389	 48.05	0	1401890..1404070	+	726	56552285	dsbD1	ZMO1389	-	thiol:disulfide interchange protein
1390	 50.44	0	1404125..1405030	-	301	56552286	-	ZMO1390	-	hypothetical protein
1391	 48.36	0	1405104..1406081	-	325	56552287	-	ZMO1391	-	sphingosine kinase
1392	 46.63	0	1406078..1406581	-	167	56552288	-	ZMO1392	-	hypothetical protein
1393	 44.63	0	1407222..1407956	+	244	56552289	-	ZMO1393	-	permease
1394	 46.48	0	1407953..1409047	+	364	56552290	-	ZMO1394	-	permease
1395	 48.26	0	1409049..1409912	-	287	56552291	hutG	ZMO1395	-	N-formylglutamate amidohydrolase
1396	 50.37	0	1409897..1410571	-	224	56552292	-	ZMO1396	-	hypothetical protein
1397	 34.26	-2	1410688..1410795	+	35	56552293	-	ZMO1397	-	hypothetical protein
1398	 44.18	0	1410900..1411148	-	82	56552294	-	ZMO1398	-	hypothetical protein
1399	 45.04	0	1411450..1412124	+	224	56552295	-	ZMO1399	-	hypothetical protein
1400	 45.16	0	1412260..1413417	+	385	56552296	-	ZMO1400	-	hypothetical protein
1401	 45.67	0	1413496..1414281	-	261	56552297	-	ZMO1401	-	nuclease
1402	 45.98	0	1414281..1414628	-	115	56552298	-	ZMO1402	-	hypothetical protein
1403	 48.82	0	1414720..1415733	-	337	56552299	-	ZMO1403	-	membrane protein
1404	 48.07	0	1415947..1416645	-	232	56552300	rpoE	ZMO1404	-	RNA polymerase sigma-24 factor
1405	 51.07	0	1416713..1417507	-	264	56552301	-	ZMO1405	-	two-component response regulator
1406	 47.01	0	1417737..1418489	-	250	56552302	-	ZMO1406	-	hydrolase
1407	 50.19	0	1418707..1419732	-	341	56552303	asd	ZMO1407	-	aspartate-semialdehyde dehydrogenase
1408	 48.64	0	1419839..1422001	-	720	56552304	pepX	ZMO1408	-	dipeptidyl aminopeptidase
1409	 51.89	+1	1422224..1423042	-	272	56552305	cbbF	ZMO1409	-	fructose-1,6-bisphosphatase
1410	 42.28	0	1423567..1424058	+	163	56552306	bfr	ZMO1410	-	bacterioferritin
1411	 44.91	0	1424178..1424609	-	143	56552307	fur	ZMO1411	-	Fe2+/Zn2+ uptake regulation protein
1412	 49.28	0	1424857..1425270	-	137	56552308	-	ZMO1412	-	transcriptional regulator
1413	 41.09	-1	1425446..1425922	-	158	56552309	-	ZMO1413	-	acetyltransferase
1414	 52.95	+1	1425919..1426545	-	208	56552310	-	ZMO1414	-	metal-dependent protease
1415	 44.64	0	1426545..1427048	-	167	56552311	-	ZMO1415	-	thioredoxin-like protein
1416	 37.98	-1	1427040..1427168	+	42	56552312	-	ZMO1416	-	hypothetical protein
1417	 52.94	+1	1427547..1428923	+	458	56552313	-	ZMO1417	-	DNA and RNA helicase
1418	 46.81	0	1429259..1429399	-	46	56552314	-	ZMO1418	-	hypothetical protein
1419	 48.07	0	1429482..1430438	-	318	56552315	ubiA	ZMO1419	-	prenyltransferase
1420	 50.56	0	1430675..1431214	+	179	56552316	purE	ZMO1420	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1421	 47.11	0	1431211..1432299	+	362	56552317	purK	ZMO1421	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1422	 50.19	0	1432377..1435283	-	968	56552318	-	ZMO1422	-	Zn-dependent peptidase
1423	 48.34	0	1435414..1438191	-	925	56552319	-	ZMO1423	-	Zn-dependent peptidase
1424	 49.87	0	1438454..1441048	+	864	56552320	clpB	ZMO1424	-	ATP-dependent Clp protease
1425	 45.01	0	1441155..1441745	-	196	56552321	thiE	ZMO1425	-	thiamine monophosphate synthase
1426	 40.38	-1	1441905..1442330	+	141	56552322	-	ZMO1426	-	DNA repair protein
1427	 34.69	-2	1442441..1442587	-	48	56552323	-	ZMO1427	-	hypothetical protein
1428	 43.18	0	1442587..1443480	+	297	56552324	-	ZMO1428	-	sphingosine kinase
1429	 50.70	0	1443606..1445309	-	567	56552325	oprM	ZMO1429	-	multidrug efflux pump outer membrane component
1430	 50.55	0	1445306..1446403	-	365	56552326	-	ZMO1430	-	multidrug resistance efflux pump
1431	 42.74	0	1446412..1446645	-	77	56552327	-	ZMO1431	-	hypothetical protein
1432	 48.30	0	1446642..1448672	-	676	56552328	-	ZMO1432	-	hypothetical protein
1433	 43.69	0	1449121..1450134	-	337	56552329	holA	ZMO1433	-	DNA polymerase III delta subunit
1434	 51.09	0	1450144..1450695	-	183	56552330	-	ZMO1434	-	hypothetical protein
1435	 49.82	0	1450755..1453295	-	846	56552331	leuS	ZMO1435	-	leucyl-tRNA synthetase
1436	 50.11	0	1453313..1453753	-	146	56552332	-	ZMO1436	-	hypothetical protein
1437	 44.55	0	1454153..1454785	-	210	56552333	-	ZMO1437	-	hypothetical protein
1438	 43.51	0	1454986..1455447	+	153	56552334	-	ZMO1438	-	transcriptional regulator
1439	 48.14	0	1455450..1456334	-	294	56552335	-	ZMO1439	-	putative hydrolase
1440	 50.30	0	1456294..1457124	-	276	56552336	-	ZMO1440	-	hypothetical protein
1441	 51.39	0	1457593..1458711	+	372	56552337	-	ZMO1441	-	glycine oxidase
1442	 41.89	0	1458759..1459658	-	299	56552338	-	ZMO1442	-	hypothetical protein
1443	 43.04	0	1459840..1461168	+	442	56552339	-	ZMO1443	-	hypothetical protein
1444	 49.83	0	1461544..1463592	-	682	56552340	glyS	ZMO1444	-	glycyl-tRNA synthetase beta subunit
1445	 48.80	0	1463596..1464468	-	290	56552342	glyQ	ZMO1446	-	glycyl-tRNA synthetase subunit alpha
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.