IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1297	 29.66	-2	1310218..1310544	+	108	56552193	-	ZMO1297	-	hypothetical protein
1298	 45.04	0	1310721..1313138	+	805	56552194	-	ZMO1298	-	TonB-dependent receptor
1299	 38.56	-1	1314028..1315653	+	541	56552195	bcbG	ZMO1299	-	capsular polysaccharide biosynthesis protein
1300	 35.68	-2	1315650..1316372	+	240	56552196	bcbE	ZMO1300	-	capsular polysaccharide biosynthesis protein
1301	 30.03	-2	1316403..1317491	-	362	56552197	-	ZMO1301	-	hypothetical protein
1302	 47.00	0	1317728..1318378	+	216	56552198	lipB	ZMO1302	-	lipoyltransferase
1303	 50.99	0	1318505..1319359	-	284	56552199	proC	ZMO1303	-	pyrroline-5-carboxylate reductase
1304	 47.65	0	1319410..1319919	-	169	56552200	-	ZMO1304	-	hypothetical protein
1305	 46.76	0	1320048..1320263	-	71	56552201	-	ZMO1305	-	hypothetical protein
1306	 48.27	0	1320469..1321218	-	249	56552202	-	ZMO1306	-	rRNA methylase
1307	 48.36	0	1321511..1323034	+	507	56552203	fumA	ZMO1307	-	fumarate hydratase
1308	 47.65	0	1323127..1323573	-	148	56552204	holC	ZMO1308	-	DNA polymerase III subunit chi
1309	 50.87	0	1323585..1325084	-	499	56552205	pepA	ZMO1309	-	leucyl aminopeptidase
1310	 33.33	-2	1325183..1325290	-	35	56552206	-	ZMO1310	-	hypothetical protein
1311	 47.29	0	1325487..1327778	+	763	56552207	ostA	ZMO1311	-	organic solvent tolerance protein
1312	 46.54	0	1327897..1329312	+	471	56552208	-	ZMO1312	-	peptidyl-prolyl isomerase
1313	 50.30	0	1329354..1330361	+	335	56552209	pdxA	ZMO1313	-	4-hydroxythreonine-4-phosphate dehydrogenase
1314	 50.54	0	1330372..1331208	+	278	56552210	ksgA	ZMO1314	-	dimethyladenosine transferase
1315	 44.25	0	1331220..1332089	-	289	56552211	-	ZMO1315	-	hypothetical protein
1316	 48.01	0	1332106..1333440	-	444	56552212	-	ZMO1316	-	hypothetical protein
1317	 47.73	0	1333526..1334296	-	256	56552213	-	ZMO1317	-	hypothetical protein
1318	 50.76	0	1334301..1335023	-	240	56552214	-	ZMO1318	-	hypothetical protein
1319	 47.94	0	1335527..1336156	-	209	56552215	-	ZMO1319	-	hypothetical protein
1320	 50.85	0	1336326..1337558	-	410	56552216	-	ZMO1320	-	tRNA and rRNA cytosine-C5-methylase
1321	 52.81	+1	1337588..1339045	-	485	56552217	guaB	ZMO1321	-	IMP dehydrogenase
1322	 48.45	0	1339322..1340029	+	235	56552218	-	ZMO1322	-	two-component response regulator
1323	 51.34	0	1339998..1341635	+	545	56552219	-	ZMO1323	-	two-component signal transduction histidine kinase
1324	 45.53	0	1341778..1342269	+	163	56552220	-	ZMO1324	-	HPr protein serine kinase
1325	 48.77	0	1342292..1343263	+	323	56552221	-	ZMO1325	-	hypothetical protein
1326	 49.63	0	1343271..1343675	+	134	56552222	nagE	ZMO1326	-	PTS system mannose/fructose-specific component IIA
1327	 50.92	0	1343672..1343944	+	90	56552223	-	ZMO1327	-	PTS system phosphocarrier protein HPr
1328	 50.93	0	1343962..1344768	+	268	56552224	-	ZMO1328	-	rRNA methylase
1329	 49.03	0	1344821..1345597	+	258	56552225	ppnK	ZMO1329	-	inorganic polyphosphate/ATP-NAD kinase
1330	 32.64	-2	1345700..1345843	-	47	56552226	-	ZMO1330	-	hypothetical protein
1331	 47.46	0	1345922..1348732	+	936	56552227	-	ZMO1331	-	small-conductance mechanosensitive channel
1332	 35.09	-2	1348878..1348991	+	37	56552228	-	ZMO1332	-	hypothetical protein
1333	 44.72	0	1349332..1349454	-	40	56552229	-	ZMO1333	-	hypothetical protein
1334	 44.39	0	1349455..1350069	+	204	56552230	-	ZMO1334	-	hypothetical protein
1335	 53.57	+1	1350349..1350951	+	200	56552231	wrbA	ZMO1335	-	TrpR binding protein WrbA
1336	 47.81	0	1351092..1352003	-	303	56552232	-	ZMO1336	-	transcriptional regulator
1337	 47.88	0	1352135..1352842	+	235	56552233	-	ZMO1337	-	hypothetical protein
1338	 47.15	0	1352846..1353460	-	204	56552234	-	ZMO1338	-	LysE family efflux protein
1339	 31.53	-2	1353459..1353569	+	36	56552235	-	ZMO1339	-	hypothetical protein
1340	 46.08	0	1354639..1354842	-	67	56552236	-	ZMO1340	-	MFS permease
1341	 49.74	0	1355504..1356088	-	194	56552237	-	ZMO1341	-	metalloprotease
1342	 40.00	-1	1356078..1356197	-	39	56552238	-	ZMO1342	-	hypothetical protein
1343	 37.04	-1	1356711..1356818	-	35	56552239	-	ZMO1343	-	hypothetical protein
1344	 47.94	0	1356974..1357822	+	282	56552240	dkg	ZMO1344	-	2,5-diketo-D-gluconate reductase
1345	 48.92	0	1357946..1360549	-	867	56552241	pepN	ZMO1345	-	aminopeptidase N
1346	 46.19	0	1360617..1361573	-	318	56552242	-	ZMO1346	-	drug/metabolite transporter
1347	 50.10	0	1361611..1362624	-	337	56552243	ltaE	ZMO1347	-	threonine aldolase
1348	 50.06	0	1362690..1363520	-	276	56552244	map	ZMO1348	-	methionine aminopeptidase
1349	 42.11	0	1363529..1363642	-	37	56552245	-	ZMO1349	-	hypothetical protein
1350	 48.16	0	1363633..1364394	+	253	56552246	-	ZMO1350	-	nucleotide-utilizing enzyme
1351	 47.56	0	1364407..1365411	+	334	56552247	clcD	ZMO1351	-	putative carboxymethylenebutenolidase
1352	 49.08	0	1365503..1366207	-	234	56552248	-	ZMO1352	-	integral membrane protein
1353	 45.81	0	1366463..1367023	-	186	56552249	-	ZMO1353	-	hypothetical protein
1354	 55.34	+1	1367207..1367983	-	258	56552250	-	ZMO1354	-	peptidoglycan-associated protein
1355	 48.55	0	1368723..1370588	-	621	56552251	-	ZMO1355	-	ABC transporter
1356	 48.59	0	1370683..1372137	-	484	56552252	dnaA	ZMO1356	-	chromosomal replication initiator protein
1357	 43.65	0	1372549..1372800	+	83	56552253	-	ZMO1357	-	hypothetical protein
1358	 48.48	0	1372804..1373067	-	87	56552254	rpsT	ZMO1358	-	30S ribosomal protein S20
1359	 33.33	-2	1373148..1373264	+	38	56552255	-	ZMO1359	-	hypothetical protein
1360	 52.37	+1	1373405..1375111	-	568	56552256	pdc	ZMO1360	-	pyruvate decarboxylase
1361	 36.51	-1	1375186..1375374	-	62	56552257	-	ZMO1361	-	hypothetical protein
1362	 46.39	0	1375358..1375648	-	96	56552258	-	ZMO1362	-	hypothetical protein
1363	 36.49	-1	1375810..1376031	+	73	56552259	-	ZMO1363	-	hypothetical protein
1364	 45.67	0	1376059..1377420	+	453	56552260	hemN	ZMO1364	-	coproporphyrinogen III oxidase
1365	 43.56	0	1379200..1380891	+	563	56552261	-	ZMO1365	-	hypothetical protein
1366	 48.78	0	1381072..1381686	+	204	56552262	rpsD	ZMO1366	-	30S ribosomal protein S4
1367	 43.33	0	1381820..1382059	+	79	56552263	-	ZMO1367	-	hypothetical protein
1368	 35.96	-1	1381951..1382064	-	37	56552264	-	ZMO1368	-	hypothetical protein
1369	 49.03	0	1382194..1383174	+	326	56552265	-	ZMO1369	-	peptidylarginine deiminase
1370	 47.70	0	1383186..1384034	+	282	56552266	-	ZMO1370	-	hydrolase
1371	 43.27	0	1384005..1384175	-	56	56552267	-	ZMO1371	-	hypothetical protein
1372	 46.10	0	1384622..1385467	-	281	56552268	-	ZMO1372	-	short chain dehydrogenase
1373	 44.44	0	1385910..1386422	+	170	56552269	-	ZMO1373	-	hypothetical protein
1374	 42.56	0	1386585..1387538	-	317	56552270	-	ZMO1374	-	hypothetical protein
1375	 51.49	0	1387670..1388341	-	223	56552271	rnc	ZMO1375	-	ribonuclease III
1376	 35.04	-2	1388469..1388585	+	38	56552272	-	ZMO1376	-	hypothetical protein
1377	 49.28	0	1388708..1389886	-	392	56552273	-	ZMO1377	-	hypothetical protein
1378	 50.00	0	1390186..1391595	-	469	56552274	eutP	ZMO1378	-	amino acid transporter
1379	 35.09	-2	1391558..1391785	-	75	56552275	-	ZMO1379	-	hypothetical protein
1380	 47.90	0	1391915..1392985	-	356	56552276	-	ZMO1380	-	transcriptional regulatory protein
1381	 48.69	0	1393189..1394373	-	394	56552277	-	ZMO1381	-	hypothetical protein
1382	 49.92	0	1394440..1395759	+	439	56552278	-	ZMO1382	-	putative aminotransferase
1383	 40.20	-1	1395857..1395958	+	33	56552279	-	ZMO1383	-	hypothetical protein
1384	 48.75	0	1395955..1396875	+	306	56552280	era	ZMO1384	-	GTP-binding protein Era
1385	 47.76	0	1396959..1398233	+	424	56552281	-	ZMO1385	-	hypothetical protein
1386	 47.27	0	1398243..1398938	+	231	56552282	-	ZMO1386	-	hypothetical protein
1387	 43.26	0	1399125..1399829	+	234	56552283	-	ZMO1387	-	two-component response regulator
1388	 51.10	0	1399964..1401730	-	588	56552284	ggt	ZMO1388	-	gamma-glutamyltransferase
1389	 48.05	0	1401890..1404070	+	726	56552285	dsbD1	ZMO1389	-	thiol:disulfide interchange protein
1390	 50.44	0	1404125..1405030	-	301	56552286	-	ZMO1390	-	hypothetical protein
1391	 48.36	0	1405104..1406081	-	325	56552287	-	ZMO1391	-	sphingosine kinase
1392	 46.63	0	1406078..1406581	-	167	56552288	-	ZMO1392	-	hypothetical protein
1393	 44.63	0	1407222..1407956	+	244	56552289	-	ZMO1393	-	permease
1394	 46.48	0	1407953..1409047	+	364	56552290	-	ZMO1394	-	permease
1395	 48.26	0	1409049..1409912	-	287	56552291	hutG	ZMO1395	-	N-formylglutamate amidohydrolase
1396	 50.37	0	1409897..1410571	-	224	56552292	-	ZMO1396	-	hypothetical protein
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.