IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1239	 39.64	-1	1262273..1262383	+	36	56552135	-	ZMO1239	-	hypothetical protein
1240	 50.95	0	1262589..1263275	-	228	56552136	gpm	ZMO1240	-	phosphoglycerate mutase
1241	 44.93	0	1263379..1263516	+	45	56552137	-	ZMO1241	-	hypothetical protein
1242	 49.69	0	1263525..1264667	-	380	56552138	-	ZMO1242	-	carboxypeptidase
1243	 55.23	+1	1264664..1265476	-	270	56552139	-	ZMO1243	-	hypothetical protein
1244	 32.54	-2	1265495..1265620	+	41	56552140	-	ZMO1244	-	hypothetical protein
1245	 34.06	-2	1265601..1265738	+	45	56552141	-	ZMO1245	-	hypothetical protein
1246	 51.59	0	1265756..1265881	+	41	56552142	-	ZMO1246	-	ribosomal protein L36
1247	 47.15	0	1266432..1266554	+	40	56552143	-	ZMO1247	-	hypothetical protein
1248	 48.06	0	1266591..1267079	-	162	56552144	-	ZMO1248	-	hypothetical protein
1249	 42.86	0	1267369..1267620	-	83	56552145	-	ZMO1249	-	hypothetical protein
1250	 42.33	0	1267757..1267945	-	62	56552146	-	ZMO1250	-	hypothetical protein
1251	 50.10	0	1268042..1268530	-	162	56552147	-	ZMO1251	-	hypothetical protein
1252	 52.02	+1	1268562..1269203	-	213	56552148	-	ZMO1252	-	cytochrome c biogenesis factor
1253	 49.18	0	1269200..1269628	-	142	56552149	-	ZMO1253	-	cytochrome c biogenesis protein
1254	 49.89	0	1269625..1270065	-	146	56552150	-	ZMO1254	-	cytochrome c biogenesis protein
1255	 50.39	0	1270152..1272098	-	648	56552151	cycK	ZMO1255	-	cytochrome c biogenesis factor
1256	 54.65	+1	1272100..1272540	-	146	56552152	cycJ	ZMO1256	-	cytochrome c biogenesis protein
1257	 49.09	0	1272564..1272728	-	54	56552153	-	ZMO1257	-	hypothetical protein
1258	 48.54	0	1272725..1273441	-	238	56552154	cycZ	ZMO1258	-	ABC-type transport system heme exporter
1259	 35.66	-2	1273598..1273726	+	42	56552155	-	ZMO1259	-	hypothetical protein
1260	 43.28	0	1274039..1276291	+	750	56552156	-	ZMO1260	-	TonB-dependent receptor
1261	 41.74	0	1276477..1277535	+	352	56552157	ssuA	ZMO1261	-	ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic components
1262	 41.85	0	1277480..1278313	+	277	56552158	ssuC	ZMO1262	-	ABC-type nitrate/sulfonate/bicarbonate transport system permease component
1263	 42.88	0	1278314..1279036	+	240	56552159	ssuB	ZMO1263	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component
1264	 44.42	0	1279074..1280255	+	393	56552160	rspA	ZMO1264	-	putative mandelate racemase
1265	 43.99	0	1280266..1280922	+	218	56552161	-	ZMO1265	-	metal-binding protein
1266	 42.01	0	1280950..1281168	+	72	56552162	-	ZMO1266	-	hypothetical protein
1267	 49.72	0	1281143..1282723	+	526	56552163	guaA	ZMO1267	-	bifunctional GMP synthase/glutamine amidotransferase protein
1268	 49.14	0	1282800..1283843	-	347	56552164	-	ZMO1268	-	hypothetical protein
1269	 41.27	0	1284042..1284419	-	125	56552165	-	ZMO1269	-	hypothetical protein
1270	 48.68	0	1284395..1285606	+	403	56552166	-	ZMO1270	-	serine palmitoyltransferase
1271	 49.94	0	1285737..1286603	-	288	56552167	cysG	ZMO1271	-	siroheme synthase
1272	 48.43	0	1286815..1288245	+	476	56552168	astD	ZMO1272	-	succinylglutamic semialdehyde dehydrogenase
1273	 46.97	0	1288295..1289878	-	527	56552169	-	ZMO1273	-	metal-dependent hydrolase
1274	 37.96	-1	1289962..1290069	-	35	56552170	-	ZMO1274	-	hypothetical protein
1275	 49.15	0	1290233..1291471	+	412	56552171	tdcB	ZMO1275	-	threonine dehydratase
1276	 55.42	+1	1291504..1291743	+	79	56552172	-	ZMO1276	-	hypothetical protein
1277	 47.90	0	1291947..1292948	-	333	56552173	-	ZMO1277	-	hypothetical protein
1278	 50.81	0	1292952..1294250	-	432	56552174	fabF	ZMO1278	-	3-oxoacyl-(acyl-carrier-protein) synthase
1279	 47.68	0	1294404..1294640	-	78	56552175	acpP	ZMO1279	-	acyl carrier protein
1280	 46.38	0	1294413..1294688	+	91	56552176	acpP	ZMO1280	-	acyl carrier protein
1281	 36.67	-1	1294828..1294977	+	49	56552177	-	ZMO1281	-	hypothetical protein
1282	 32.50	-2	1295081..1295200	+	39	56552178	-	ZMO1282	-	hypothetical protein
1283	 49.47	0	1295281..1296321	+	346	56552179	-	ZMO1283	-	LacI family transcriptional regulator
1284	 49.62	0	1296344..1297786	-	480	56552180	sldC	ZMO1284	-	sorbitol dehydrogenase cytochrome c subunit
1285	 50.67	0	1297779..1299416	-	545	56552181	sldL	ZMO1285	-	solbitol dehydrogenase large subunit
1286	 47.64	0	1299435..1300028	-	197	56552182	sldS	ZMO1286	-	sorbitol dehydrogenase small subunit
1287	 40.09	-1	1300474..1301568	-	364	56552183	-	ZMO1287	-	LPS glycosyltransferase
1288	 48.22	0	1301964..1303085	+	373	56552184	-	ZMO1288	-	MFS permease
1289	 46.99	0	1303193..1303441	-	82	56552185	-	ZMO1289	-	transglycosylase associated protein
1290	 39.32	-1	1303544..1303660	+	38	56552186	-	ZMO1290	-	hypothetical protein
1291	 47.36	0	1303635..1305245	-	536	56552187	-	ZMO1291	-	carboxypeptidase-related protein
1292	 35.15	-2	1305697..1305861	-	54	56552188	-	ZMO1292	-	hypothetical protein
1293	 39.46	-1	1305786..1305932	+	48	56552189	-	ZMO1293	-	hypothetical protein
1294	 51.36	0	1305913..1306866	+	317	56552190	murQ	ZMO1294	-	N-acetylmuramic acid-6-phosphate etherase
1295	 45.41	0	1306863..1307516	+	217	56552191	-	ZMO1295	-	organic radical activating enzyme
1296	 42.99	0	1309332..1310087	-	251	56552192	-	ZMO1296	-	hypothetical protein
1297	 29.66	-2	1310218..1310544	+	108	56552193	-	ZMO1297	-	hypothetical protein
1298	 45.04	0	1310721..1313138	+	805	56552194	-	ZMO1298	-	TonB-dependent receptor
1299	 38.56	-1	1314028..1315653	+	541	56552195	bcbG	ZMO1299	-	capsular polysaccharide biosynthesis protein
1300	 35.68	-2	1315650..1316372	+	240	56552196	bcbE	ZMO1300	-	capsular polysaccharide biosynthesis protein
1301	 30.03	-2	1316403..1317491	-	362	56552197	-	ZMO1301	-	hypothetical protein
1302	 47.00	0	1317728..1318378	+	216	56552198	lipB	ZMO1302	-	lipoyltransferase
1303	 50.99	0	1318505..1319359	-	284	56552199	proC	ZMO1303	-	pyrroline-5-carboxylate reductase
1304	 47.65	0	1319410..1319919	-	169	56552200	-	ZMO1304	-	hypothetical protein
1305	 46.76	0	1320048..1320263	-	71	56552201	-	ZMO1305	-	hypothetical protein
1306	 48.27	0	1320469..1321218	-	249	56552202	-	ZMO1306	-	rRNA methylase
1307	 48.36	0	1321511..1323034	+	507	56552203	fumA	ZMO1307	-	fumarate hydratase
1308	 47.65	0	1323127..1323573	-	148	56552204	holC	ZMO1308	-	DNA polymerase III subunit chi
1309	 50.87	0	1323585..1325084	-	499	56552205	pepA	ZMO1309	-	leucyl aminopeptidase
1310	 33.33	-2	1325183..1325290	-	35	56552206	-	ZMO1310	-	hypothetical protein
1311	 47.29	0	1325487..1327778	+	763	56552207	ostA	ZMO1311	-	organic solvent tolerance protein
1312	 46.54	0	1327897..1329312	+	471	56552208	-	ZMO1312	-	peptidyl-prolyl isomerase
1313	 50.30	0	1329354..1330361	+	335	56552209	pdxA	ZMO1313	-	4-hydroxythreonine-4-phosphate dehydrogenase
1314	 50.54	0	1330372..1331208	+	278	56552210	ksgA	ZMO1314	-	dimethyladenosine transferase
1315	 44.25	0	1331220..1332089	-	289	56552211	-	ZMO1315	-	hypothetical protein
1316	 48.01	0	1332106..1333440	-	444	56552212	-	ZMO1316	-	hypothetical protein
1317	 47.73	0	1333526..1334296	-	256	56552213	-	ZMO1317	-	hypothetical protein
1318	 50.76	0	1334301..1335023	-	240	56552214	-	ZMO1318	-	hypothetical protein
1319	 47.94	0	1335527..1336156	-	209	56552215	-	ZMO1319	-	hypothetical protein
1320	 50.85	0	1336326..1337558	-	410	56552216	-	ZMO1320	-	tRNA and rRNA cytosine-C5-methylase
1321	 52.81	+1	1337588..1339045	-	485	56552217	guaB	ZMO1321	-	IMP dehydrogenase
1322	 48.45	0	1339322..1340029	+	235	56552218	-	ZMO1322	-	two-component response regulator
1323	 51.34	0	1339998..1341635	+	545	56552219	-	ZMO1323	-	two-component signal transduction histidine kinase
1324	 45.53	0	1341778..1342269	+	163	56552220	-	ZMO1324	-	HPr protein serine kinase
1325	 48.77	0	1342292..1343263	+	323	56552221	-	ZMO1325	-	hypothetical protein
1326	 49.63	0	1343271..1343675	+	134	56552222	nagE	ZMO1326	-	PTS system mannose/fructose-specific component IIA
1327	 50.92	0	1343672..1343944	+	90	56552223	-	ZMO1327	-	PTS system phosphocarrier protein HPr
1328	 50.93	0	1343962..1344768	+	268	56552224	-	ZMO1328	-	rRNA methylase
1329	 49.03	0	1344821..1345597	+	258	56552225	ppnK	ZMO1329	-	inorganic polyphosphate/ATP-NAD kinase
1330	 32.64	-2	1345700..1345843	-	47	56552226	-	ZMO1330	-	hypothetical protein
1331	 47.46	0	1345922..1348732	+	936	56552227	-	ZMO1331	-	small-conductance mechanosensitive channel
1332	 35.09	-2	1348878..1348991	+	37	56552228	-	ZMO1332	-	hypothetical protein
1333	 44.72	0	1349332..1349454	-	40	56552229	-	ZMO1333	-	hypothetical protein
1334	 44.39	0	1349455..1350069	+	204	56552230	-	ZMO1334	-	hypothetical protein
1335	 53.57	+1	1350349..1350951	+	200	56552231	wrbA	ZMO1335	-	TrpR binding protein WrbA
1336	 47.81	0	1351092..1352003	-	303	56552232	-	ZMO1336	-	transcriptional regulator
1337	 47.88	0	1352135..1352842	+	235	56552233	-	ZMO1337	-	hypothetical protein
1338	 47.15	0	1352846..1353460	-	204	56552234	-	ZMO1338	-	LysE family efflux protein
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.