IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
78	 52.94	+1	68587..69096	-	169	56550974	cheW	ZMO0078	-	chemotaxis protein
79	 48.91	0	69267..69632	-	121	56550975	cheY	ZMO0079	-	chemotaxis protein
80	 48.79	0	69777..70313	-	178	56550976	cheD	ZMO0080	-	chemotaxis protein
81	 52.50	+1	70350..71408	-	352	56550977	cheB	ZMO0081	-	chemotaxis-specific methylesterase
82	 47.77	0	71405..72277	-	290	56550978	cheR	ZMO0082	-	chemotaxis methyltransferase
83	 51.52	0	72274..74604	-	776	56550979	cheA	ZMO0083	-	chemotaxis protein
84	 48.52	0	74615..74884	-	89	56550980	-	ZMO0084	-	hypothetical protein
85	 48.55	0	75058..76371	-	437	56550981	mcpJ	ZMO0085	-	chemotaxis methyl-accepting protein
86	 49.54	0	76804..78969	-	721	56550982	-	ZMO0086	-	guanosine polyphosphate pyrophosphohydrolase
87	 44.93	0	79112..79594	-	160	56550983	-	ZMO0087	-	hypothetical protein
88	 42.13	0	79720..80424	-	234	56550984	-	ZMO0088	-	hypothetical protein
89	 42.28	0	80633..81325	-	230	56550985	-	ZMO0089	-	hypothetical protein
90	 50.75	0	81762..82559	-	265	56550986	-	ZMO0090	-	dehydrogenase
91	 39.74	-1	82626..82781	+	51	56550987	-	ZMO0091	-	hypothetical protein
92	 40.65	-1	82882..83646	+	254	56550988	-	ZMO0092	-	hypothetical protein
93	 46.27	0	83741..83941	+	66	56550989	-	ZMO0093	-	hypothetical protein
94	 50.95	0	83922..84869	+	315	56550990	bioB	ZMO0094	-	biotin synthase
95	 41.44	0	84952..85173	-	73	56550991	-	ZMO0095	-	hypothetical protein
96	 49.28	0	85619..86170	-	183	56550992	pgsA	ZMO0096	-	phosphatidylglycerophosphate synthase
97	 47.62	0	86169..86315	+	48	56550993	-	ZMO0097	-	hypothetical protein
98	 42.51	0	86443..86649	+	68	56550994	-	ZMO0098	-	hypothetical protein
99	 47.75	0	86672..87940	+	422	56550995	plsC	ZMO0099	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
100	 45.93	0	88005..88385	-	126	56550996	-	ZMO0100	-	hypothetical protein
101	 45.63	0	88492..89556	+	354	56550997	-	ZMO0101	-	nucleoside-diphosphate-sugar epimerase
102	 39.13	-1	89568..89774	+	68	56550998	-	ZMO0102	-	hypothetical protein
103	 49.96	0	90130..91548	+	472	56550999	-	ZMO0103	-	hypothetical protein
104	 42.98	0	91568..91681	+	37	56551000	-	ZMO0104	-	hypothetical protein
105	 53.88	+1	91653..93107	+	484	56551001	leuC	ZMO0105	-	isopropylmalate isomerase large subunit
106	 46.29	0	93104..93682	+	192	56551002	leuD	ZMO0106	-	3-isopropylmalate dehydratase small subunit
107	 48.02	0	93747..94556	-	269	56551003	-	ZMO0107	-	hypothetical protein
108	 49.85	0	94614..94940	-	108	56551004	-	ZMO0108	-	cation transporter
109	 37.43	-1	95278..96717	+	479	56551005	-	ZMO0109	-	hypothetical protein
110	 39.90	-1	96714..97703	+	329	56551006	-	ZMO0110	-	hypothetical protein
111	 50.70	0	97850..99646	-	598	56551007	-	ZMO0111	-	ABC transporter
112	 45.83	0	99833..100192	+	119	56551008	-	ZMO0112	-	hypothetical protein
113	 45.56	0	100982..102388	+	468	56551009	pabB	ZMO0113	-	para-aminobenzoate synthase component I
114	 46.57	0	102405..103016	+	203	56551010	trpGD	ZMO0114	-	anthranilate synthase component II
115	 47.79	0	102961..103818	+	285	56551011	pabC	ZMO0115	-	branched-chain amino acid aminotransferase
116	 48.86	0	104018..104455	+	145	56551012	-	ZMO0116	-	hypothetical protein
117	 49.33	0	104522..106159	+	545	56551013	hcp	ZMO0117	-	hydroxylamine reductase
118	 41.30	0	106299..106436	+	45	56551014	-	ZMO0118	-	hypothetical protein
119	 44.57	0	106417..107484	+	355	56551015	nhaA	ZMO0119	-	Na+/H+ antiporter
120	 47.72	0	107594..108712	+	372	56551016	-	ZMO0120	-	hypothetical protein
121	 47.78	0	108980..110329	+	449	56551017	-	ZMO0121	-	recombination factor protein RarA
122	 42.11	0	110510..110851	+	113	56551018	-	ZMO0122	-	hypothetical protein
123	 43.75	0	110972..111115	+	47	56551019	-	ZMO0123	-	hypothetical protein
124	 50.82	0	111118..112701	-	527	56551020	-	ZMO0124	-	ATPase
125	 50.00	0	112714..113187	-	157	56551021	-	ZMO0125	-	hypothetical protein
126	 33.33	-2	114284..114433	+	49	56551022	-	ZMO0126	-	hypothetical protein
127	 50.73	0	114594..115553	-	319	56551023	-	ZMO0127	-	nuclease S1
128	 48.52	0	115571..117961	-	796	56551024	-	ZMO0128	-	TonB-dependent receptor
129	 35.56	-2	117948..118127	+	59	56551025	-	ZMO0129	-	hypothetical protein
130	 49.43	0	118386..119180	-	264	56551026	phoC	ZMO0130	-	acid phosphatase precursor
131	 48.34	0	119338..120363	-	341	56551027	-	ZMO0131	-	hypothetical protein
132	 48.09	0	120850..121608	+	252	56551028	-	ZMO0132	-	hypothetical protein
133	 47.23	0	121929..122669	+	246	56551029	-	ZMO0133	-	hypothetical protein
134	 47.70	0	122852..123352	+	166	56551030	-	ZMO0134	-	hypothetical protein
135	 50.08	0	123511..124161	+	216	56551031	-	ZMO0135	-	hypothetical protein
136	 46.03	0	124255..124971	+	238	56551032	-	ZMO0136	-	hypothetical protein
137	 48.21	0	125171..126427	+	418	56551033	-	ZMO0137	-	hypothetical protein
138	 49.59	0	126496..126618	+	40	56551034	-	ZMO0138	-	hypothetical protein
139	 51.68	0	126525..127418	-	297	56551035	-	ZMO0139	-	fructosamine-3-kinase
140	 51.46	0	127484..127963	-	159	56551036	ptpA	ZMO0140	-	protein-tyrosine-phosphatase
141	 38.78	-1	128159..128305	+	48	56551037	-	ZMO0141	-	hypothetical protein
142	 51.40	0	128320..129000	+	226	56551038	-	ZMO0142	-	hypothetical protein
143	 49.08	0	129000..129977	+	325	56551039	-	ZMO0143	-	ABC-type multidrug transport system
144	 50.66	0	130042..131634	+	530	56551040	nadB	ZMO0144	-	aspartate oxidase
145	 48.75	0	131657..133330	+	557	56551041	-	ZMO0145	-	peptidase
146	 39.15	-1	133270..133458	-	62	56551042	-	ZMO0146	-	hypothetical protein
147	 44.14	0	133751..133861	-	36	56551043	-	ZMO0147	-	hypothetical protein
148	 51.30	0	133995..134801	-	268	56551044	-	ZMO0148	-	hypothetical protein
149	 51.29	0	134986..135681	-	231	56551045	trmB	ZMO0149	-	tRNA (guanine-N(7))-methyltransferase
150	 47.85	0	135761..136387	-	208	56551046	-	ZMO0150	-	hypothetical protein
151	 44.21	0	136392..136676	-	94	56551047	-	ZMO0151	-	hypothetical protein
152	 53.22	+1	136654..138081	-	475	56551048	pyk	ZMO0152	-	pyruvate kinase
153	 50.40	0	139093..139842	+	249	56551049	yebC	ZMO0153	-	hypothetical protein
154	 54.96	+1	139877..140380	+	167	56551050	ruvC	ZMO0154	-	Holliday junction resolvasome endonuclease subunit
155	 46.88	0	140422..141063	+	213	56551051	ruvA	ZMO0155	-	Holliday junction resolvasome DNA-binding subunit
156	 46.28	0	141123..141485	-	120	56551052	-	ZMO0156	-	hypothetical protein
157	 47.85	0	141694..142623	-	309	56551053	lhdA	ZMO0157	-	2-hydroxyacid dehydrogenase
158	 50.38	0	142769..143812	+	347	56551054	ruvB	ZMO0158	-	Holliday junction DNA helicase B
159	 47.29	0	143992..144120	+	42	56551055	-	ZMO0159	-	hypothetical protein
160	 46.77	0	144121..144492	+	123	56551056	-	ZMO0160	-	thioesterase
161	 50.09	0	144500..145054	+	184	56551057	-	ZMO0161	-	TolQ biopolymer transport proteins
162	 48.86	0	145216..145743	+	175	56551058	exbD	ZMO0162	-	TolR biopolymer transport protein
163	 54.66	+1	145771..146178	+	135	56551059	-	ZMO0163	-	hypothetical protein
164	 47.28	0	146153..146833	+	226	56551060	tonB	ZMO0164	-	TonB protein
165	 50.69	0	146887..148263	+	458	56551061	tolB	ZMO0165	-	translocation protein TolB
166	 50.66	0	148390..148920	+	176	56551062	-	ZMO0166	-	peptidoglycan-associated protein
167	 40.67	-1	148925..149074	-	49	56551063	-	ZMO0167	-	hypothetical protein
168	 46.08	0	149098..149505	-	135	56551064	glpQ	ZMO0168	-	glycerophosphoryl diester phosphodiesterase
169	 52.42	+1	150839..151582	-	247	56551065	-	ZMO0169	-	putative short chain oxidoreductase
170	 48.91	0	152071..152622	-	183	56551066	glpQ	ZMO0170	-	glycerophosphoryl diester phosphodiesterase
171	 45.46	0	153520..155028	-	502	56551067	-	ZMO0171	-	TonB-dependent receptor
172	 48.98	0	155420..157234	+	604	56551068	thiC	ZMO0172	-	thiamine biosynthesis protein ThiC
173	 44.78	0	157752..158153	-	133	56551069	-	ZMO0173	-	hypothetical protein
174	 42.75	0	158346..158738	-	130	56551070	-	ZMO0174	-	hypothetical protein
175	 46.81	0	158949..159230	-	93	56551071	-	ZMO0175	-	hypothetical protein
176	 49.70	0	159445..161436	+	663	56551072	tklB	ZMO0176	-	transketolase
177	 53.94	+1	161486..162499	+	337	56551073	gap	ZMO0177	-	glyceraldehyde 3-phosphate dehydrogenase
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.