IslandPathversion 1.0

IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.43 STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1209	 49.92	0	1231838..1233796	-	652	56552105	kup	ZMO1209	-	K+ transporter
1210	 39.84	-1	1233845..1234090	-	81	56552106	-	ZMO1210	-	hypothetical protein
1211	 50.19	0	1234263..1235609	-	448	56552107	gor	ZMO1211	-	pyruvate/2-oxoglutarate dehydrogenase complex
1212	 50.66	0	1235772..1237295	-	507	56552108	pgi	ZMO1212	-	glucose-6-phosphate isomerase
1213	 51.40	0	1237660..1238052	+	130	56552109	-	ZMO1213	-	hypothetical protein
1214	 50.17	0	1238222..1239700	+	492	56552110	-	ZMO1214	-	DNA and RNA helicase
1215	 46.95	0	1240045..1240257	+	70	56552111	-	ZMO1215	-	hypothetical protein
1216	 44.89	0	1240284..1241936	+	550	56552112	-	ZMO1216	-	two-component signal transduction histidine kinase
1217	 42.82	0	1242240..1242629	-	129	56552113	-	ZMO1217	-	hypothetical protein
1218	 50.32	0	1243598..1244386	-	262	56552114	tatC	ZMO1218	-	Sec-independent protein secretion pathway component
1219	 52.51	+1	1244383..1244841	-	152	56552115	tatB	ZMO1219	-	Sec-independent protein secretion pathway component
1220	 48.48	0	1244926..1245189	-	87	56552116	tatA	ZMO1220	-	Sec-independent protein secretion pathway component
1221	 51.99	+1	1245342..1246043	-	233	56552117	-	ZMO1221	-	hypothetical protein
1222	 51.49	0	1246156..1246893	-	245	56552118	-	ZMO1222	-	dehydrogenase
1223	 52.99	+1	1246963..1247898	-	311	56552119	fabD	ZMO1223	-	acyl-carrier-protein S-malonyltransferase
1224	 39.26	-1	1247925..1248059	+	44	56552120	-	ZMO1224	-	hypothetical protein
1225	 53.60	+1	1248419..1248793	+	124	56552121	rpsF	ZMO1225	-	30S ribosomal protein S6
1226	 52.44	+1	1248814..1249038	+	74	56552122	rpsR	ZMO1226	-	30S ribosomal protein S18
1227	 48.89	0	1249053..1249682	+	209	56552123	rplI	ZMO1227	-	50S ribosomal protein L9
1228	 51.10	0	1249762..1250757	-	331	56552124	ykfB	ZMO1228	-	mandelate racemase
1229	 48.87	0	1250845..1251507	-	220	56552125	folE	ZMO1229	-	GTP cyclohydrolase I
1230	 42.62	0	1251496..1251678	+	60	56552126	-	ZMO1230	-	hypothetical protein
1231	 50.00	0	1251782..1253359	+	525	56552127	recJ	ZMO1231	-	single-stranded DNA-specific exonuclease
1232	 38.46	-1	1253711..1255036	+	441	56552128	-	ZMO1232	-	glycosyltransferase
1233	 46.92	0	1255086..1256498	-	470	56552129	pmi	ZMO1233	-	mannose-6-phosphate isomerase
1234	 52.56	+1	1256550..1258499	-	649	56552130	dxs	ZMO1234	-	1-deoxy-D-xylulose-5-phosphate synthase
1235	 47.53	0	1258677..1259162	-	161	56552131	-	ZMO1235	-	transcriptional regulator
1236	 49.21	0	1259409..1260422	-	337	56552132	adhA	ZMO1236	-	alcohol dehydrogenase
1237	 46.39	0	1261124..1262119	-	331	56552133	ldhA	ZMO1237	-	D-lactate dehydrogenase
1238	 33.33	-2	1262094..1262210	+	38	56552134	-	ZMO1238	-	hypothetical protein
1239	 39.64	-1	1262273..1262383	+	36	56552135	-	ZMO1239	-	hypothetical protein
1240	 50.95	0	1262589..1263275	-	228	56552136	gpm	ZMO1240	-	phosphoglycerate mutase
1241	 44.93	0	1263379..1263516	+	45	56552137	-	ZMO1241	-	hypothetical protein
1242	 49.69	0	1263525..1264667	-	380	56552138	-	ZMO1242	-	carboxypeptidase
1243	 55.23	+1	1264664..1265476	-	270	56552139	-	ZMO1243	-	hypothetical protein
1244	 32.54	-2	1265495..1265620	+	41	56552140	-	ZMO1244	-	hypothetical protein
1245	 34.06	-2	1265601..1265738	+	45	56552141	-	ZMO1245	-	hypothetical protein
1246	 51.59	0	1265756..1265881	+	41	56552142	-	ZMO1246	-	ribosomal protein L36
1247	 47.15	0	1266432..1266554	+	40	56552143	-	ZMO1247	-	hypothetical protein
1248	 48.06	0	1266591..1267079	-	162	56552144	-	ZMO1248	-	hypothetical protein
1249	 42.86	0	1267369..1267620	-	83	56552145	-	ZMO1249	-	hypothetical protein
1250	 42.33	0	1267757..1267945	-	62	56552146	-	ZMO1250	-	hypothetical protein
1251	 50.10	0	1268042..1268530	-	162	56552147	-	ZMO1251	-	hypothetical protein
1252	 52.02	+1	1268562..1269203	-	213	56552148	-	ZMO1252	-	cytochrome c biogenesis factor
1253	 49.18	0	1269200..1269628	-	142	56552149	-	ZMO1253	-	cytochrome c biogenesis protein
1254	 49.89	0	1269625..1270065	-	146	56552150	-	ZMO1254	-	cytochrome c biogenesis protein
1255	 50.39	0	1270152..1272098	-	648	56552151	cycK	ZMO1255	-	cytochrome c biogenesis factor
1256	 54.65	+1	1272100..1272540	-	146	56552152	cycJ	ZMO1256	-	cytochrome c biogenesis protein
1257	 49.09	0	1272564..1272728	-	54	56552153	-	ZMO1257	-	hypothetical protein
1258	 48.54	0	1272725..1273441	-	238	56552154	cycZ	ZMO1258	-	ABC-type transport system heme exporter
1259	 35.66	-2	1273598..1273726	+	42	56552155	-	ZMO1259	-	hypothetical protein
1260	 43.28	0	1274039..1276291	+	750	56552156	-	ZMO1260	-	TonB-dependent receptor
1261	 41.74	0	1276477..1277535	+	352	56552157	ssuA	ZMO1261	-	ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic components
1262	 41.85	0	1277480..1278313	+	277	56552158	ssuC	ZMO1262	-	ABC-type nitrate/sulfonate/bicarbonate transport system permease component
1263	 42.88	0	1278314..1279036	+	240	56552159	ssuB	ZMO1263	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component
1264	 44.42	0	1279074..1280255	+	393	56552160	rspA	ZMO1264	-	putative mandelate racemase
1265	 43.99	0	1280266..1280922	+	218	56552161	-	ZMO1265	-	metal-binding protein
1266	 42.01	0	1280950..1281168	+	72	56552162	-	ZMO1266	-	hypothetical protein
1267	 49.72	0	1281143..1282723	+	526	56552163	guaA	ZMO1267	-	bifunctional GMP synthase/glutamine amidotransferase protein
1268	 49.14	0	1282800..1283843	-	347	56552164	-	ZMO1268	-	hypothetical protein
1269	 41.27	0	1284042..1284419	-	125	56552165	-	ZMO1269	-	hypothetical protein
1270	 48.68	0	1284395..1285606	+	403	56552166	-	ZMO1270	-	serine palmitoyltransferase
1271	 49.94	0	1285737..1286603	-	288	56552167	cysG	ZMO1271	-	siroheme synthase
1272	 48.43	0	1286815..1288245	+	476	56552168	astD	ZMO1272	-	succinylglutamic semialdehyde dehydrogenase
1273	 46.97	0	1288295..1289878	-	527	56552169	-	ZMO1273	-	metal-dependent hydrolase
1274	 37.96	-1	1289962..1290069	-	35	56552170	-	ZMO1274	-	hypothetical protein
1275	 49.15	0	1290233..1291471	+	412	56552171	tdcB	ZMO1275	-	threonine dehydratase
1276	 55.42	+1	1291504..1291743	+	79	56552172	-	ZMO1276	-	hypothetical protein
1277	 47.90	0	1291947..1292948	-	333	56552173	-	ZMO1277	-	hypothetical protein
1278	 50.81	0	1292952..1294250	-	432	56552174	fabF	ZMO1278	-	3-oxoacyl-(acyl-carrier-protein) synthase
1279	 47.68	0	1294404..1294640	-	78	56552175	acpP	ZMO1279	-	acyl carrier protein
1280	 46.38	0	1294413..1294688	+	91	56552176	acpP	ZMO1280	-	acyl carrier protein
1281	 36.67	-1	1294828..1294977	+	49	56552177	-	ZMO1281	-	hypothetical protein
1282	 32.50	-2	1295081..1295200	+	39	56552178	-	ZMO1282	-	hypothetical protein
1283	 49.47	0	1295281..1296321	+	346	56552179	-	ZMO1283	-	LacI family transcriptional regulator
1284	 49.62	0	1296344..1297786	-	480	56552180	sldC	ZMO1284	-	sorbitol dehydrogenase cytochrome c subunit
1285	 50.67	0	1297779..1299416	-	545	56552181	sldL	ZMO1285	-	solbitol dehydrogenase large subunit
1286	 47.64	0	1299435..1300028	-	197	56552182	sldS	ZMO1286	-	sorbitol dehydrogenase small subunit
1287	 40.09	-1	1300474..1301568	-	364	56552183	-	ZMO1287	-	LPS glycosyltransferase
1288	 48.22	0	1301964..1303085	+	373	56552184	-	ZMO1288	-	MFS permease
1289	 46.99	0	1303193..1303441	-	82	56552185	-	ZMO1289	-	transglycosylase associated protein
1290	 39.32	-1	1303544..1303660	+	38	56552186	-	ZMO1290	-	hypothetical protein
1291	 47.36	0	1303635..1305245	-	536	56552187	-	ZMO1291	-	carboxypeptidase-related protein
1292	 35.15	-2	1305697..1305861	-	54	56552188	-	ZMO1292	-	hypothetical protein
1293	 39.46	-1	1305786..1305932	+	48	56552189	-	ZMO1293	-	hypothetical protein
1294	 51.36	0	1305913..1306866	+	317	56552190	murQ	ZMO1294	-	N-acetylmuramic acid-6-phosphate etherase
1295	 45.41	0	1306863..1307516	+	217	56552191	-	ZMO1295	-	organic radical activating enzyme
1296	 42.99	0	1309332..1310087	-	251	56552192	-	ZMO1296	-	hypothetical protein
1297	 29.66	-2	1310218..1310544	+	108	56552193	-	ZMO1297	-	hypothetical protein
1298	 45.04	0	1310721..1313138	+	805	56552194	-	ZMO1298	-	TonB-dependent receptor
1299	 38.56	-1	1314028..1315653	+	541	56552195	bcbG	ZMO1299	-	capsular polysaccharide biosynthesis protein
1300	 35.68	-2	1315650..1316372	+	240	56552196	bcbE	ZMO1300	-	capsular polysaccharide biosynthesis protein
1301	 30.03	-2	1316403..1317491	-	362	56552197	-	ZMO1301	-	hypothetical protein
1302	 47.00	0	1317728..1318378	+	216	56552198	lipB	ZMO1302	-	lipoyltransferase
1303	 50.99	0	1318505..1319359	-	284	56552199	proC	ZMO1303	-	pyrroline-5-carboxylate reductase
1304	 47.65	0	1319410..1319919	-	169	56552200	-	ZMO1304	-	hypothetical protein
1305	 46.76	0	1320048..1320263	-	71	56552201	-	ZMO1305	-	hypothetical protein
1306	 48.27	0	1320469..1321218	-	249	56552202	-	ZMO1306	-	rRNA methylase
1307	 48.36	0	1321511..1323034	+	507	56552203	fumA	ZMO1307	-	fumarate hydratase
1308	 47.65	0	1323127..1323573	-	148	56552204	holC	ZMO1308	-	DNA polymerase III subunit chi
46.43	MEAN

5.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.