IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1044	 42.58	0	1059012..1059476	+	154	56551940	-	ZMO1044	-	mechanosensitive channel
1045	 45.37	0	1059562..1061148	-	528	56551941	-	ZMO1045	-	hypothetical protein
1046	 34.21	-2	1061127..1061354	+	75	56551942	-	ZMO1046	-	hypothetical protein
1047	 49.38	0	1061414..1062454	+	346	56551943	pstS	ZMO1047	-	ABC transporter phosphate-binding protein
1048	 47.50	0	1062549..1063508	+	319	56551944	-	ZMO1048	-	hypothetical protein
1049	 46.95	0	1063517..1064353	+	278	56551945	pstA	ZMO1049	-	phosphate transporter
1050	 45.66	0	1064269..1065225	+	318	56551946	pstB	ZMO1050	-	phosphate transporter ATP-binding protein
1051	 34.11	-2	1065205..1065333	-	42	56551947	-	ZMO1051	-	hypothetical protein
1052	 46.15	0	1065560..1066339	+	259	56551948	purC	ZMO1052	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1053	 45.19	0	1066436..1066570	-	44	56551949	-	ZMO1053	-	hypothetical protein
1054	 46.02	0	1066743..1068989	+	748	56551950	parC	ZMO1054	-	DNA topoisomerase IV subunit A
1055	 44.54	0	1069238..1070977	+	579	56551951	-	ZMO1055	-	hypothetical protein
1056	 48.98	0	1070974..1072194	-	406	56551952	cca	ZMO1056	-	tRNA nucleotidyltransferase
1057	 50.94	0	1072199..1072732	-	177	56551953	-	ZMO1057	-	putative acetyltransferase
1058	 33.96	-2	1072752..1072910	+	52	56551954	-	ZMO1058	-	hypothetical protein
1059	 45.63	0	1073129..1073551	+	140	56551955	-	ZMO1059	-	hypothetical protein
1060	 48.17	0	1073614..1074240	-	208	56551956	sod	ZMO1060	-	superoxide dismutase
1061	 48.47	0	1074455..1075531	-	358	56551957	-	ZMO1061	-	transcriptional regulator
1062	 43.93	0	1075707..1076225	+	172	56551958	-	ZMO1062	-	hypothetical protein
1063	 45.74	0	1076228..1076896	+	222	56551959	pspA	ZMO1063	-	sigma54-dependent transcription suppressor
1064	 43.96	0	1076896..1077168	+	90	56551960	-	ZMO1064	-	hypothetical protein
1065	 47.40	0	1077186..1077569	+	127	56551961	pspC	ZMO1065	-	putative stress-responsive transcriptional regulator
1066	 39.15	-1	1077706..1077894	+	62	56551962	-	ZMO1066	-	hypothetical protein
1067	 44.20	0	1078027..1078431	+	134	56551963	sufE	ZMO1067	-	Fe-S center assembly protein
1068	 45.06	0	1078428..1078862	+	144	56551964	-	ZMO1068	-	hypothetical protein
1069	 45.52	0	1078905..1079429	-	174	56551965	-	ZMO1069	-	DnaJ-class molecular chaperone
1070	 49.62	0	1080003..1080935	-	310	56551966	-	ZMO1070	-	signal recognition particle GTPase
1071	 47.54	0	1080932..1082191	-	419	56551967	-	ZMO1071	-	hypothetical protein
1072	 49.38	0	1082188..1082997	-	269	56551968	dapF	ZMO1072	-	diaminopimelate epimerase
1073	 41.11	-1	1082971..1083150	+	59	56551969	-	ZMO1073	-	hypothetical protein
1074	 42.74	0	1083227..1083343	-	38	56551970	-	ZMO1074	-	hypothetical protein
1075	 50.74	0	1083359..1084783	+	474	56551971	-	ZMO1075	-	signal recognition particle GTPase
1076	 53.94	+1	1084814..1085245	+	143	56551972	rpsP	ZMO1076	-	30S ribosomal protein S16
1077	 48.98	0	1085249..1085740	+	163	56551973	rimM	ZMO1077	-	16S rRNA processing protein
1078	 49.73	0	1085737..1086486	+	249	56551974	trmD	ZMO1078	-	tRNA-(guanine-N1)-methyltransferase
1079	 47.73	0	1086483..1086857	+	124	56551975	rplS	ZMO1079	-	50S ribosomal protein L19
1080	 38.17	-1	1087000..1087185	+	61	56551976	-	ZMO1080	-	hypothetical protein
1081	 44.12	0	1087238..1087858	+	206	56551977	-	ZMO1081	-	hypothetical protein
1082	 41.44	0	1087830..1088051	+	73	56551978	-	ZMO1082	-	hypothetical protein
1083	 44.59	0	1088029..1090026	+	665	56551979	-	ZMO1083	-	glycosyltransferase
1084	 46.80	0	1090023..1092338	+	771	56551980	-	ZMO1084	-	cellulose synthase regulator protein
1085	 47.69	0	1092335..1096345	+	1336	56551981	bcsC	ZMO1085	-	cellulose synthase subunit C
1086	 45.20	0	1096501..1097520	+	339	56551982	celA	ZMO1086	-	endoglucanase Y
1087	 45.58	0	1097599..1098684	+	361	56551983	mltA	ZMO1087	-	lytic murein transglycosylase
1088	 48.70	0	1098641..1099141	+	166	56551984	-	ZMO1088	-	putative rare lipoprotein A
1089	 48.46	0	1099193..1100395	+	400	56551985	dacC	ZMO1089	-	D-alanyl-D-alanine carboxypeptidase
1090	 49.92	0	1100374..1101024	+	216	56551986	tmk	ZMO1090	-	thymidylate kinase
1091	 46.53	0	1101024..1102016	+	330	56551987	holB	ZMO1091	-	DNA polymerase III delta prime subunit
1092	 46.55	0	1102034..1103599	+	521	56551988	metG	ZMO1092	-	methionyl-tRNA synthetase
1093	 46.20	0	1103599..1104375	+	258	56551989	-	ZMO1093	-	Mg-dependent DNase
1094	 44.58	0	1104372..1105136	+	254	56551990	-	ZMO1094	-	metal-dependent hydrolase
1095	 40.88	-1	1105488..1106309	+	273	56551991	-	ZMO1095	-	pyrophosphatase
1096	 46.40	0	1106750..1109038	-	762	56551992	rnr	ZMO1096	-	exoribonuclease R
1097	 47.98	0	1109140..1109460	-	106	56551993	-	ZMO1097	-	thiol-disulfide isomerase
1098	 48.52	0	1109545..1113033	-	1162	56551994	addA	ZMO1098	-	ATP-dependent exoDNAse beta subunit
1099	 49.16	0	1113043..1116024	-	993	56551995	-	ZMO1099	-	helicase
1100	 48.16	0	1116033..1116794	-	253	56551996	-	ZMO1100	-	nucleotidyl pyrophosphorylase
1101	 48.76	0	1116870..1117394	-	174	56551997	-	ZMO1101	-	ATPase
1102	 47.86	0	1117378..1119387	-	669	56551998	-	ZMO1102	-	two-component signal transduction histidine kinase
1103	 46.45	0	1119614..1119796	-	60	56551999	-	ZMO1103	-	hypothetical protein
1104	 48.78	0	1119821..1119943	-	40	56552000	-	ZMO1104	-	hypothetical protein
1105	 46.93	0	1120062..1122377	-	771	56552001	-	ZMO1105	-	two-component signal transduction histidine kinase
1106	 25.76	-2	1122400..1122531	+	43	56552002	-	ZMO1106	-	hypothetical protein
1107	 47.41	0	1122623..1123105	+	160	56552003	-	ZMO1107	-	transcriptional regulator
1108	 37.82	-1	1123174..1123329	-	51	56552004	-	ZMO1108	-	hypothetical protein
1109	 50.49	0	1123339..1124661	-	440	56552005	-	ZMO1109	-	hypothetical protein
1110	 32.43	-2	1124870..1124980	-	36	56552006	-	ZMO1110	-	hypothetical protein
1111	 44.87	0	1124998..1126245	+	415	56552007	-	ZMO1111	-	ABC transporter
1112	 42.45	0	1126250..1126852	-	200	56552008	ispZ	ZMO1112	-	intracellular septation protein A
1113	 49.55	0	1127117..1128442	+	441	56552009	ndh	ZMO1113	-	NADH dehydrogenase
1114	 50.56	0	1128573..1129193	+	206	56552010	ung	ZMO1114	-	uracil-DNA glycosylase
1115	 45.90	0	1129615..1130418	+	267	56552011	bacA	ZMO1115	-	putative undecaprenol kinase
1116	 50.37	0	1130576..1132048	+	490	56552012	gltD	ZMO1116	-	putative oxidoreductase
1117	 50.24	0	1132150..1136745	+	1531	56552013	gltB	ZMO1117	-	glutamate synthase [NADPH] large chain precursor
1118	 47.17	0	1136825..1137496	+	223	56552014	-	ZMO1118	-	glutathione S-transferase family protein
1119	 39.05	-1	1137540..1137644	+	34	56552015	-	ZMO1119	-	hypothetical protein
1120	 36.26	-1	1137551..1137721	-	56	56552016	-	ZMO1120	-	hypothetical protein
1121	 45.49	0	1137746..1138222	-	158	56552017	-	ZMO1121	-	transcriptional regulator
1122	 46.78	0	1138224..1138565	-	113	56552018	himA	ZMO1122	-	integration host factor alpha-subunit
1123	 35.00	-2	1138626..1138745	-	39	56552019	-	ZMO1123	-	hypothetical protein
1124	 51.05	0	1139378..1140805	-	475	56552020	-	ZMO1124	-	two-component response regulator
1125	 48.24	0	1140805..1143111	-	768	56552021	-	ZMO1125	-	two-component signal transduction histidine kinase
1126	 48.57	0	1143242..1143556	-	104	56552022	ntrC	ZMO1126	-	nitrogen assimilation regulatory protein
1127	 47.95	0	1143569..1144594	-	341	56552023	dus	ZMO1127	-	tRNA-dihydrouridine synthase
1128	 49.35	0	1144746..1145906	+	386	56552024	ispDF	ZMO1128	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1129	 50.56	0	1145918..1146457	+	179	56552025	-	ZMO1129	-	hypothetical protein
1130	 48.58	0	1146408..1147148	+	246	56552026	-	ZMO1130	-	competence-damaged protein
1131	 43.02	0	1147335..1147778	-	147	56552027	-	ZMO1131	-	oligoketide cyclase
1132	 50.21	0	1147778..1148749	-	323	56552028	lipA	ZMO1132	-	lipoyl synthase
1133	 47.94	0	1148850..1149479	+	209	56552029	-	ZMO1133	-	carbonic anhydrase
1134	 45.48	0	1149495..1150391	+	298	56552030	-	ZMO1134	-	hypothetical protein
1135	 50.71	0	1150446..1151792	-	448	56552031	-	ZMO1135	-	Zn-dependent peptidase
1136	 46.96	0	1151917..1153362	-	481	56552032	cytC	ZMO1136	-	cytochrome c peroxidase
1137	 46.62	0	1153786..1154703	-	305	56552033	serB	ZMO1137	-	phosphoserine phosphatase
1138	 43.66	0	1154660..1155598	+	312	56552034	miaA	ZMO1138	-	isopentenyl-diphosphate:tRNA isopentenyltransferase
1139	 51.06	0	1155752..1157539	+	595	56552035	ilvI	ZMO1139	-	acetolactate synthase large subunit
1140	 48.93	0	1157561..1158073	+	170	56552036	ilvH	ZMO1140	-	acetolactate synthase 3 regulatory subunit
1141	 48.24	0	1158119..1159138	+	339	56552037	ilvC	ZMO1141	-	ketol-acid reductoisomerase
1142	 48.48	0	1159852..1160808	-	318	56552038	trxB	ZMO1142	-	thioredoxin reductase
1143	 43.73	0	1161120..1161773	-	217	56552039	cat3	ZMO1143	-	chloramphenicol acetyltransferase
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.