IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
990	 40.65	-1	1008083..1008205	-	40	56551886	-	ZMO0990	-	hypothetical protein
991	 40.43	-1	1008117..1008257	+	46	56551887	-	ZMO0991	-	hypothetical protein
992	 47.10	0	1008338..1009870	-	510	56551888	-	ZMO0992	-	carboxypeptidase C
993	 34.21	-2	1010071..1010184	+	37	56551889	-	ZMO0993	-	hypothetical protein
994	 50.85	0	1010308..1010838	-	176	56551890	-	ZMO0994	-	hypothetical protein
995	 26.67	-2	1011023..1011127	+	34	56551891	-	ZMO0995	-	hypothetical protein
996	 46.90	0	1011165..1012262	+	365	56551892	-	ZMO0996	-	small-conductance mechanosensitive channel
997	 51.36	0	1012264..1012890	+	208	56551893	eda	ZMO0997	-	2-dehydro-3-deoxy-phosphogluconate aldolase
998	 43.65	0	1013229..1013771	+	180	56551894	msrA	ZMO0998	-	peptide methionine sulfoxide reductase
999	 50.30	0	1013800..1014789	-	329	56551895	-	ZMO0999	-	putative translation factor
1000	 51.14	0	1015219..1017498	+	759	56551896	metE	ZMO1000	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1001	 42.37	0	1017751..1019244	+	497	56551897	-	ZMO1001	-	peptide ABC transporter
1002	 50.45	0	1019317..1020654	+	445	56551898	mrsA	ZMO1002	-	phosphomannomutase
1003	 48.58	0	1020617..1021495	+	292	56551899	thiD	ZMO1003	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
1004	 46.76	0	1021495..1022142	+	215	56551900	rnhB	ZMO1004	-	ribonuclease HII
1005	 43.94	0	1022339..1023460	+	373	56551901	babI	ZMO1005	-	adenine-specific methyltransferase
1006	 46.87	0	1023496..1024566	+	356	56551902	sul	ZMO1006	-	dihydropteroate synthase
1007	 43.87	0	1024688..1025551	+	287	56551903	-	ZMO1007	-	hypothetical protein
1008	 47.10	0	1025677..1027122	+	481	56551904	-	ZMO1008	-	FAD/FMN-containing dehydrogenase
1009	 46.51	0	1027261..1028049	+	262	56551905	-	ZMO1009	-	hypothetical protein
1010	 45.83	0	1028150..1028605	+	151	56551906	-	ZMO1010	-	hypothetical protein
1011	 47.31	0	1028827..1029012	-	61	56551907	-	ZMO1011	-	hypothetical protein
1012	 49.90	0	1029035..1030048	-	337	56551908	-	ZMO1012	-	ribonuclease
1013	 51.07	0	1030049..1030657	-	202	56551909	-	ZMO1013	-	nucleotide-binding protein
1014	 44.70	0	1030663..1030926	-	87	56551910	infA	ZMO1014	-	translation initiation factor 1
1015	 49.44	0	1031099..1031725	-	208	56551911	-	ZMO1015	-	hypothetical protein
1016	 47.57	0	1031731..1032678	-	315	56551912	-	ZMO1016	-	ABC-type transport system periplasmic component
1017	 48.23	0	1032689..1033480	-	263	56551913	-	ZMO1017	-	ABC-type transport system ATP-binding protein
1018	 48.59	0	1033477..1034577	-	366	56551914	-	ZMO1018	-	ABC-type transport system permease component
1019	 48.62	0	1034760..1035812	-	350	56551915	dys	ZMO1019	-	deoxyhypusine synthase-like protein
1020	 49.41	0	1035894..1037075	-	393	56551916	lysA	ZMO1020	-	diaminopimelate/ornithine decarboxylase
1021	 48.47	0	1037395..1038048	-	217	56551917	-	ZMO1021	-	hydrolase
1022	 47.95	0	1038181..1039227	+	348	56551918	nifS	ZMO1022	-	cysteine desulfurase
1023	 49.02	0	1039279..1040043	+	254	56551919	-	ZMO1023	-	ATPase
1024	 38.89	-1	1040325..1040432	-	35	56551920	-	ZMO1024	-	hypothetical protein
1025	 47.80	0	1040392..1042410	+	672	56551921	nrdD	ZMO1025	-	anaerobic ribonucleoside triphosphate reductase
1026	 47.09	0	1042447..1042635	+	62	56551922	-	ZMO1026	-	hypothetical protein
1027	 49.92	0	1042622..1043224	+	200	56551923	pflA	ZMO1027	-	pyruvate-formate lyase-activating enzyme
1028	 41.44	0	1043221..1043331	-	36	56551924	-	ZMO1028	-	hypothetical protein
1029	 45.53	0	1043305..1044222	+	305	56551925	-	ZMO1029	-	ABC-type multidrug transport system ATPase component
1030	 43.45	0	1044231..1045031	+	266	56551926	-	ZMO1030	-	hypothetical protein
1031	 40.74	-1	1045052..1045213	+	53	56551927	-	ZMO1031	-	hypothetical protein
1032	 47.96	0	1045191..1046366	+	391	56551928	-	ZMO1032	-	Fe-S-cluster redox protein
1033	 45.99	0	1046422..1047669	+	415	56551929	cfa	ZMO1033	-	cyclopropane fatty acid synthase
1034	 49.92	0	1047790..1048404	-	204	56551930	-	ZMO1034	-	hypothetical protein
1035	 39.87	-1	1048513..1048665	-	50	56551931	-	ZMO1035	-	hypothetical protein
1036	 49.31	0	1048664..1049890	+	408	56551932	argG	ZMO1036	-	argininosuccinate synthase
1037	 26.13	-2	1050125..1050235	+	36	56551933	-	ZMO1037	-	hypothetical protein
1038	 41.09	-1	1050196..1050324	+	42	56551934	-	ZMO1038	-	hypothetical protein
1039	 47.62	0	1051409..1052248	-	279	56551935	nrdA	ZMO1039	-	ribonucleotide reductase alpha subunit
1040	 45.86	0	1052996..1056211	+	1071	56551936	-	ZMO1040	-	TonB-dependent receptor
1041	 44.44	0	1056452..1057009	-	185	56551937	-	ZMO1041	-	NTP pyrophosphohydrolase
1042	 46.33	0	1057094..1058224	-	376	56551938	-	ZMO1042	-	hypothetical protein
1043	 50.40	0	1058154..1058780	-	208	56551939	-	ZMO1043	-	hypothetical protein
1044	 42.58	0	1059012..1059476	+	154	56551940	-	ZMO1044	-	mechanosensitive channel
1045	 45.37	0	1059562..1061148	-	528	56551941	-	ZMO1045	-	hypothetical protein
1046	 34.21	-2	1061127..1061354	+	75	56551942	-	ZMO1046	-	hypothetical protein
1047	 49.38	0	1061414..1062454	+	346	56551943	pstS	ZMO1047	-	ABC transporter phosphate-binding protein
1048	 47.50	0	1062549..1063508	+	319	56551944	-	ZMO1048	-	hypothetical protein
1049	 46.95	0	1063517..1064353	+	278	56551945	pstA	ZMO1049	-	phosphate transporter
1050	 45.66	0	1064269..1065225	+	318	56551946	pstB	ZMO1050	-	phosphate transporter ATP-binding protein
1051	 34.11	-2	1065205..1065333	-	42	56551947	-	ZMO1051	-	hypothetical protein
1052	 46.15	0	1065560..1066339	+	259	56551948	purC	ZMO1052	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1053	 45.19	0	1066436..1066570	-	44	56551949	-	ZMO1053	-	hypothetical protein
1054	 46.02	0	1066743..1068989	+	748	56551950	parC	ZMO1054	-	DNA topoisomerase IV subunit A
1055	 44.54	0	1069238..1070977	+	579	56551951	-	ZMO1055	-	hypothetical protein
1056	 48.98	0	1070974..1072194	-	406	56551952	cca	ZMO1056	-	tRNA nucleotidyltransferase
1057	 50.94	0	1072199..1072732	-	177	56551953	-	ZMO1057	-	putative acetyltransferase
1058	 33.96	-2	1072752..1072910	+	52	56551954	-	ZMO1058	-	hypothetical protein
1059	 45.63	0	1073129..1073551	+	140	56551955	-	ZMO1059	-	hypothetical protein
1060	 48.17	0	1073614..1074240	-	208	56551956	sod	ZMO1060	-	superoxide dismutase
1061	 48.47	0	1074455..1075531	-	358	56551957	-	ZMO1061	-	transcriptional regulator
1062	 43.93	0	1075707..1076225	+	172	56551958	-	ZMO1062	-	hypothetical protein
1063	 45.74	0	1076228..1076896	+	222	56551959	pspA	ZMO1063	-	sigma54-dependent transcription suppressor
1064	 43.96	0	1076896..1077168	+	90	56551960	-	ZMO1064	-	hypothetical protein
1065	 47.40	0	1077186..1077569	+	127	56551961	pspC	ZMO1065	-	putative stress-responsive transcriptional regulator
1066	 39.15	-1	1077706..1077894	+	62	56551962	-	ZMO1066	-	hypothetical protein
1067	 44.20	0	1078027..1078431	+	134	56551963	sufE	ZMO1067	-	Fe-S center assembly protein
1068	 45.06	0	1078428..1078862	+	144	56551964	-	ZMO1068	-	hypothetical protein
1069	 45.52	0	1078905..1079429	-	174	56551965	-	ZMO1069	-	DnaJ-class molecular chaperone
1070	 49.62	0	1080003..1080935	-	310	56551966	-	ZMO1070	-	signal recognition particle GTPase
1071	 47.54	0	1080932..1082191	-	419	56551967	-	ZMO1071	-	hypothetical protein
1072	 49.38	0	1082188..1082997	-	269	56551968	dapF	ZMO1072	-	diaminopimelate epimerase
1073	 41.11	-1	1082971..1083150	+	59	56551969	-	ZMO1073	-	hypothetical protein
1074	 42.74	0	1083227..1083343	-	38	56551970	-	ZMO1074	-	hypothetical protein
1075	 50.74	0	1083359..1084783	+	474	56551971	-	ZMO1075	-	signal recognition particle GTPase
1076	 53.94	+1	1084814..1085245	+	143	56551972	rpsP	ZMO1076	-	30S ribosomal protein S16
1077	 48.98	0	1085249..1085740	+	163	56551973	rimM	ZMO1077	-	16S rRNA processing protein
1078	 49.73	0	1085737..1086486	+	249	56551974	trmD	ZMO1078	-	tRNA-(guanine-N1)-methyltransferase
1079	 47.73	0	1086483..1086857	+	124	56551975	rplS	ZMO1079	-	50S ribosomal protein L19
1080	 38.17	-1	1087000..1087185	+	61	56551976	-	ZMO1080	-	hypothetical protein
1081	 44.12	0	1087238..1087858	+	206	56551977	-	ZMO1081	-	hypothetical protein
1082	 41.44	0	1087830..1088051	+	73	56551978	-	ZMO1082	-	hypothetical protein
1083	 44.59	0	1088029..1090026	+	665	56551979	-	ZMO1083	-	glycosyltransferase
1084	 46.80	0	1090023..1092338	+	771	56551980	-	ZMO1084	-	cellulose synthase regulator protein
1085	 47.69	0	1092335..1096345	+	1336	56551981	bcsC	ZMO1085	-	cellulose synthase subunit C
1086	 45.20	0	1096501..1097520	+	339	56551982	celA	ZMO1086	-	endoglucanase Y
1087	 45.58	0	1097599..1098684	+	361	56551983	mltA	ZMO1087	-	lytic murein transglycosylase
1088	 48.70	0	1098641..1099141	+	166	56551984	-	ZMO1088	-	putative rare lipoprotein A
1089	 48.46	0	1099193..1100395	+	400	56551985	dacC	ZMO1089	-	D-alanyl-D-alanine carboxypeptidase
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.