IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
51	 49.46	0	62556..64961	+	801	145597375	-	YPDSF_0052	-	glycogen/starch/alpha-glucan phosphorylase
52	 51.22	0	64974..67070	+	698	145597376	malQ	YPDSF_0053	-	4-alpha-glucanotransferase
53	 46.70	0	67399..67974	-	191	145597377	-	YPDSF_0054	-	putative DNA uptake protein
54	 55.27	+1	68034..68735	-	233	145597378	-	YPDSF_0055	-	gluconate periplasmic binding protein
55	 52.01	0	68801..69598	+	265	145597379	-	YPDSF_0056	-	biotin biosynthesis protein
56	 44.07	0	69768..70037	+	89	145597380	-	YPDSF_0057	-	hypothetical protein
57	 52.33	0	70175..70432	-	85	145597381	-	YPDSF_0058	-	hypothetical protein
58	 51.08	0	70468..72783	-	771	145597382	feoB	YPDSF_0059	-	ferrous iron transport protein B
59	 48.68	0	72875..73102	-	75	145597383	feoA	YPDSF_0060	-	ferrous iron transport protein A
60	 54.17	+1	73626..76001	-	791	145597384	-	YPDSF_0061	-	hypothetical protein
61	 49.22	0	76535..77050	+	171	145597385	greB	YPDSF_0062	-	transcription elongation factor GreB
62	 52.22	0	77186..77905	+	239	145597386	ompR	YPDSF_0063	-	osmolarity response regulator
63	 51.52	0	77902..79254	+	450	145597387	envZ	YPDSF_0064	-	osmolarity sensor protein
64	 49.57	0	79409..81028	-	539	145597388	-	YPDSF_0065	-	phosphoenolpyruvate carboxykinase
65	 49.21	0	81225..82106	-	293	145597389	hslO	YPDSF_0066	-	Hsp33-like chaperonin
66	 52.21	0	82269..82676	-	135	145597390	-	YPDSF_0067	-	heat shock protein 15
67	 48.02	0	82705..83385	-	226	145597391	-	YPDSF_0068	-	hypothetical protein
68	 48.37	0	83529..85676	-	715	145597392	-	YPDSF_0069	-	membrane protein
69	 47.44	0	86263..86808	+	181	145597393	nudE	YPDSF_0070	-	ADP-ribose diphosphatase NudE
70	 51.76	0	86944..89499	-	851	145597394	mrcA	YPDSF_0071	-	peptidoglycan synthetase
71	 52.06	0	89619..90515	+	298	145597395	-	YPDSF_0072	-	hypothetical protein
72	 51.82	0	90515..91120	+	201	145597396	-	YPDSF_0073	-	hypothetical protein
73	 49.44	0	91068..91694	+	208	145597397	-	YPDSF_0074	-	hypothetical protein
74	 47.09	0	91660..92088	+	142	145597398	-	YPDSF_0075	-	membrane protein
75	 41.79	-1	92091..92480	-	129	145597399	-	YPDSF_0076	-	hypothetical protein
76	 48.12	0	92287..93639	+	450	145597400	-	YPDSF_0077	-	putative outer membrane porin HofQ
77	 47.89	0	93988..94509	+	173	145597401	aroK	YPDSF_0078	-	shikimate kinase I
78	 49.77	0	94566..95654	+	362	145597402	aroB	YPDSF_0079	-	3-dehydroquinate synthase
79	 48.59	0	95908..96897	+	329	145597403	-	YPDSF_0080	-	hypothetical protein
80	 45.71	0	96981..97796	+	271	145597404	-	YPDSF_0081	-	DNA adenine methylase
81	 49.71	0	98099..98776	+	225	145597405	-	YPDSF_0082	-	ribulose-phosphate 3-epimerase
82	 51.79	0	98769..99467	+	232	162202303	-	YPDSF_0083	-	phosphoglycolate phosphatase
83	 48.41	0	99469..100509	+	346	145597407	-	YPDSF_0084	-	tryptophanyl-tRNA synthetase
84	 53.16	+1	100628..102049	-	473	145597408	cysG	YPDSF_0085	-	siroheme synthase
85	 53.78	+1	102137..102943	-	268	145597409	-	YPDSF_0086	-	nitrite transporter NirC
86	 51.38	0	103122..103448	-	108	145597410	nirD	YPDSF_0087	-	nitrite reductase small subunit
87	 51.63	0	103445..105991	-	848	145597411	-	YPDSF_0088	-	nitrite reductase
88	 51.66	0	106313..107611	+	432	145597412	-	YPDSF_0089	-	cytosine deaminase
89	 47.76	0	107696..108880	-	394	145597413	-	YPDSF_0090	-	hypothetical protein
90	 50.51	0	109366..111426	+	686	145597414	-	YPDSF_0091	-	membrane receptor protein
91	 51.37	0	111539..112525	-	328	145597415	-	YPDSF_0092	-	LacI family transcriptional regulator
92	 45.26	0	114596..115165	+	189	145597416	-	YPDSF_0095	-	peptidyl-prolyl cis-trans isomerase A (rotamase A)
93	 51.95	0	115491..117032	+	513	145597417	-	YPDSF_0096	-	hypothetical protein
94	 51.91	0	117275..117850	+	191	145597418	-	YPDSF_0097	-	para-aminobenzoate synthase component II
95	 52.87	+1	117983..119200	+	405	145597419	argD	YPDSF_0098	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
96	 48.37	0	119426..121546	-	706	145597420	-	YPDSF_0099	-	hypothetical protein
97	 46.76	0	121632..122264	-	210	145597421	-	YPDSF_0100	-	cAMP-regulatory protein
98	 49.26	0	122600..123007	+	135	145597422	-	YPDSF_0101	-	hypothetical protein
99	 33.80	-2	123079..123510	+	143	145597423	-	YPDSF_0102	-	hypothetical protein
100	 49.54	0	123688..124557	-	289	145597424	-	YPDSF_0103	-	phosphoribulokinase 1
101	 49.37	0	124706..124942	-	78	145597425	-	YPDSF_0104	-	hypothetical protein
102	 51.27	0	124939..125919	-	326	145597426	-	YPDSF_0105	-	putative hydrolase
103	 48.92	0	126021..126623	+	200	145597427	-	YPDSF_0106	-	ABC-transport protein
104	 51.98	0	126826..127887	+	353	145597428	tauA	YPDSF_0107	-	taurine transporter substrate binding subunit
105	 53.65	+1	127896..128663	+	255	145597429	tauB	YPDSF_0108	-	taurine transporter ATP-binding subunit
106	 54.62	+1	128660..129514	+	284	145597430	-	YPDSF_0109	-	taurine transporter subunit
107	 51.00	0	129511..130359	+	282	145597431	tauD	YPDSF_0110	-	taurine dioxygenase
108	 49.39	0	131446..132435	-	329	145597432	-	YPDSF_0113	-	glycosyl transferase
109	 51.27	0	132570..134492	-	640	145597433	-	YPDSF_0114	-	putative ABC transporter ATP-binding protein
110	 49.18	0	134743..135291	+	182	145597434	-	YPDSF_0115	-	glutathione-regulated potassium-efflux system ancillary protein KefG
111	 51.41	0	135295..137103	+	602	145597435	-	YPDSF_0116	-	glutathione-regulated potassium-efflux system protein KefB
112	 45.95	0	137119..137340	+	73	145597436	-	YPDSF_0117	-	hypothetical protein
113	 52.55	0	137435..138022	+	195	145597437	-	YPDSF_0118	-	FKBP-type peptidyl-prolyl cis-trans isomerase
114	 48.86	0	138243..138461	-	72	145597438	-	YPDSF_0119	-	hypothetical protein
115	 45.82	0	138776..139576	+	266	145597439	-	YPDSF_0120	-	FKBP-type peptidyl-prolyl cis-trans isomerase
116	 44.40	0	139830..140552	+	240	145597440	-	YPDSF_0121	-	DNA-binding protein
117	 52.53	0	140552..140947	+	131	145597441	-	YPDSF_0122	-	hypothetical protein
118	 45.36	0	140947..141312	+	121	145597442	-	YPDSF_0123	-	hypothetical protein
119	 43.06	-1	141332..141619	+	95	145597443	-	YPDSF_0124	-	tRNA 2-thiouridine synthesizing protein B
120	 50.40	0	141757..142131	+	124	145597444	rpsL	YPDSF_0125	-	30S ribosomal protein S12
121	 47.98	0	142228..142698	+	156	145597445	-	YPDSF_0126	-	30S ribosomal protein S7
122	 48.08	0	142792..144900	+	702	145597446	-	YPDSF_0127	-	elongation factor G
123	 48.19	0	144973..146157	+	394	145597447	-	YPDSF_0128	-	elongation factor Tu
124	 45.97	0	146360..146818	+	152	145597448	-	YPDSF_0129	-	transposase for the IS1541 insertion element
125	 44.93	0	146994..147200	+	68	145597449	-	YPDSF_0130	-	bacterioferritin-associated ferredoxin
126	 38.61	-1	147279..147752	+	157	145597450	-	YPDSF_0131	-	bacterioferritin, iron storage and detoxification protein
127	 52.56	0	148166..148477	+	103	145597451	-	YPDSF_0132	-	30S ribosomal protein S10
128	 48.89	0	148510..149139	+	209	145597452	rplC	YPDSF_0133	-	50S ribosomal protein L3
129	 50.17	0	149156..149761	+	201	145597453	rplD	YPDSF_0134	-	50S ribosomal protein L4
130	 48.51	0	149758..150060	+	100	145597454	rplW	YPDSF_0135	-	50S ribosomal protein L23
131	 51.52	0	150077..150901	+	274	145597455	rplB	YPDSF_0136	-	50S ribosomal protein L2
132	 50.54	0	150916..151194	+	92	145597456	rpsS	YPDSF_0137	-	30S ribosomal protein S19
133	 50.15	0	151209..151541	+	110	145597457	rplV	YPDSF_0138	-	50S ribosomal protein L22
134	 49.36	0	151559..152257	+	232	145597458	rpsC	YPDSF_0139	-	30S ribosomal protein S3
135	 50.85	0	152270..152680	+	136	145597459	rplP	YPDSF_0140	-	50S ribosomal protein L16
136	 50.00	0	152680..152871	+	63	145597460	-	YPDSF_0141	-	50S ribosomal protein L29
137	 46.67	0	152871..153125	+	84	145597461	rpsQ	YPDSF_0142	-	30S ribosomal protein S17
138	 50.27	0	153306..153677	+	123	145597462	rplN	YPDSF_0143	-	50S ribosomal protein L14
139	 46.03	0	153688..154002	+	104	145597463	rplX	YPDSF_0144	-	50S ribosomal protein L24
140	 48.89	0	154017..154556	+	179	145597464	rplE	YPDSF_0145	-	50S ribosomal protein L5
141	 51.63	0	154570..154875	+	101	145597465	rpsN	YPDSF_0146	-	30S ribosomal protein S14
142	 47.58	0	154909..155301	+	130	145597466	rpsH	YPDSF_0147	-	30S ribosomal protein S8
143	 51.12	0	155316..155849	+	177	145597467	rplF	YPDSF_0148	-	50S ribosomal protein L6
144	 51.69	0	155859..156212	+	117	145597468	rplR	YPDSF_0149	-	50S ribosomal protein L18
145	 48.41	0	156227..156730	+	167	145597469	rpsE	YPDSF_0150	-	30S ribosomal protein S5
146	 51.03	0	156916..157350	+	144	145597470	rplO	YPDSF_0151	-	50S ribosomal protein L15
147	 45.95	0	157358..158689	+	443	145597471	secY	YPDSF_0152	-	preprotein translocase subunit SecY
148	 50.42	0	158987..159343	+	118	145597472	rpsM	YPDSF_0153	-	30S ribosomal protein S13
149	 50.26	0	159360..159749	+	129	145597473	-	YPDSF_0154	-	30S ribosomal protein S11
150	 47.83	0	159780..160400	+	206	145597474	rpsD	YPDSF_0155	-	30S ribosomal protein S4
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.