IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
922	 44.35	0	1072294..1072647	+	117	145598245	-	YPDSF_0948	-	dsDNA-mimic protein
923	 34.26	-2	1072946..1073161	-	71	145598246	-	YPDSF_0949	-	hypothetical protein
924	 45.31	0	1073722..1074723	-	333	145598247	-	YPDSF_0950	-	oligopeptide transport ATP-binding protein
925	 46.51	0	1074720..1075721	-	333	145598248	oppD	YPDSF_0951	-	oligopeptide transporter ATP-binding component
926	 47.02	0	1075733..1076638	-	301	145598249	-	YPDSF_0952	-	oligopeptide transport system permease protein
927	 43.87	0	1076657..1077577	-	306	145598250	oppB	YPDSF_0953	-	oligopeptide transporter permease
928	 42.74	-1	1077664..1079301	-	545	145598251	-	YPDSF_0954	-	periplasmic oligopeptide-binding protein precursor
929	 45.27	0	1080138..1080782	-	214	145598252	-	YPDSF_0955	-	hypothetical protein
930	 46.90	0	1081589..1084264	+	891	145598253	-	YPDSF_0956	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
931	 45.85	0	1085015..1085605	-	196	145598254	-	YPDSF_0957	-	thymidine kinase
932	 44.06	0	1086355..1086783	+	142	145598255	-	YPDSF_0958	-	global DNA-binding transcriptional dual regulator H-NS
933	 49.55	0	1086795..1088003	-	402	145598256	-	YPDSF_0959	-	transposase for the IS285 insertion element
934	 42.76	-1	1088520..1089866	-	448	145598257	-	YPDSF_0960	-	nucleotide sugar dehydrogenase
935	 43.85	0	1090173..1091189	-	338	145598258	-	YPDSF_0961	-	response regulator of RpoS
936	 47.53	0	1092523..1092987	+	154	145598259	-	YPDSF_0962	-	hypothetical protein
937	 42.87	-1	1093071..1093919	+	282	145598260	purU	YPDSF_0963	-	formyltetrahydrofolate deformylase
938	 49.55	0	1094556..1095764	+	402	145598261	-	YPDSF_0964	-	transposase for the IS285 insertion element
939	 29.27	-2	1095983..1096843	-	286	145598262	-	YPDSF_0965	-	LysR family transcriptional regulator
940	 47.58	0	1097653..1098459	+	268	145598263	-	YPDSF_0966	-	exonuclease III
941	 54.01	+1	1098557..1098943	+	128	145598264	-	YPDSF_0967	-	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
942	 43.64	0	1098956..1099246	-	96	145598265	-	YPDSF_0968	-	hypothetical protein
943	 49.30	0	1099243..1101171	-	642	145598266	-	YPDSF_0969	-	DNA topoisomerase III
944	 47.65	0	1101246..1102160	-	304	145598267	-	YPDSF_0970	-	selenide, water dikinase
945	 50.72	0	1102385..1102936	-	183	145598268	-	YPDSF_0971	-	hypothetical protein
946	 48.03	0	1103099..1104949	+	616	145598269	-	YPDSF_0972	-	protease 4
947	 47.69	0	1105066..1106082	+	338	145598270	ansA	YPDSF_0973	-	cytoplasmic asparaginase I
948	 49.69	0	1106097..1106744	+	215	145598271	-	YPDSF_0974	-	nicotinamidase/pyrazinamidase
949	 44.27	0	1106878..1107252	-	124	145598272	-	YPDSF_0975	-	hypothetical protein
950	 45.41	0	1107221..1107634	-	137	145598273	-	YPDSF_0976	-	methionine sulfoxide reductase B
951	 47.49	0	1107982..1108977	+	331	145598274	-	YPDSF_0977	-	glyceraldehyde 3-phosphate dehydrogenase A
952	 48.17	0	1109291..1110166	+	291	145598275	-	YPDSF_0978	-	hypothetical protein
953	 46.56	0	1110239..1111009	-	256	145598276	-	YPDSF_0979	-	hypothetical protein
954	 45.06	0	1111432..1113366	+	644	145598277	-	YPDSF_0980	-	hypothetical protein
955	 48.00	0	1113516..1114790	+	424	145598278	-	YPDSF_0981	-	hypothetical protein
956	 51.03	0	1114898..1116016	+	372	145598279	-	YPDSF_0982	-	membrane protein
957	 53.53	+1	1116051..1116956	-	301	145598280	-	YPDSF_0983	-	LysR family transcriptional regulator
958	 48.62	0	1117154..1118023	+	289	145598281	-	YPDSF_0984	-	hypothetical protein
959	 50.04	0	1118288..1119490	+	400	145598282	-	YPDSF_0985	-	multidrug resistance protein
960	 52.64	0	1119506..1120810	-	434	145598283	-	YPDSF_0986	-	D-amino acid dehydrogenase small subunit
961	 44.47	0	1121276..1122811	+	511	145598284	-	YPDSF_0987	-	hypothetical protein
962	 46.25	0	1123029..1123748	-	239	145598285	-	YPDSF_0988	-	fatty acid metabolism regulator
963	 46.54	0	1123992..1125566	+	524	145598286	nhaB	YPDSF_0989	-	sodium/proton antiporter
964	 45.79	0	1125787..1126332	+	181	145598287	-	YPDSF_0990	-	disulfide bond formation protein B
965	 43.98	0	1126749..1127105	-	118	145598288	-	YPDSF_0991	-	hypothetical protein
966	 51.82	0	1128197..1128937	+	246	145598289	-	YPDSF_0992	-	hypothetical protein
967	 52.33	0	1128954..1130153	+	399	145598290	-	YPDSF_0993	-	aminotransferase
968	 54.81	+1	1130157..1131101	+	314	145598291	-	YPDSF_0994	-	hypothetical protein
969	 51.92	0	1131174..1131329	+	51	145598292	-	YPDSF_0995	-	hypothetical protein
970	 51.28	0	1131588..1131743	-	51	145598293	-	YPDSF_0996	-	hypothetical protein
971	 41.43	-1	1131740..1132159	-	139	145598294	-	YPDSF_0997	-	phage tail fiber assembly protein
972	 44.34	0	1132170..1133087	-	305	145598295	-	YPDSF_0998	-	hypothetical protein
973	 44.28	0	1133104..1134117	-	337	145598296	-	YPDSF_0999	-	hypothetical protein
974	 47.63	0	1134102..1137305	-	1067	145598297	-	YPDSF_1000	-	phage host specificity protein
975	 49.92	0	1137877..1138497	-	206	145598298	-	YPDSF_1001	-	phage tail assembly protein
976	 37.32	-2	1138911..1139462	-	183	145598299	-	YPDSF_1002	-	phage-related membrane protein
977	 45.04	0	1139561..1140568	-	335	145598300	-	YPDSF_1003	-	hypothetical protein
978	 40.56	-1	1140825..1141364	+	179	145598301	-	YPDSF_1004	-	phage regulatory protein
979	 42.71	-1	1141443..1141634	-	63	145598302	-	YPDSF_1005	-	hypothetical protein
980	 52.46	0	1142347..1143057	-	236	145598303	-	YPDSF_1006	-	phage minor tail protein
981	 50.60	0	1143060..1143812	-	250	145598304	-	YPDSF_1007	-	hypothetical protein
982	 45.97	0	1143932..1144390	-	152	145598305	-	YPDSF_1008	-	transposase for the IS1541 insertion element
983	 45.75	0	1144642..1145100	-	152	145598306	-	YPDSF_1009	-	transposase for the IS1541 insertion element
984	 52.92	+1	1145406..1145747	-	113	145598307	-	YPDSF_1010	-	hypothetical protein
985	 46.67	0	1145750..1149265	-	1171	145598308	-	YPDSF_1011	-	phage tail protein
986	 46.47	0	1149574..1149885	-	103	145598309	-	YPDSF_1012	-	hypothetical protein
987	 50.05	0	1149898..1150818	-	306	145598310	-	YPDSF_1013	-	hypothetical protein
988	 44.36	0	1150884..1151291	-	135	145598311	-	YPDSF_1014	-	hypothetical protein
989	 46.32	0	1151288..1151872	-	194	145598312	-	YPDSF_1015	-	hypothetical protein
990	 48.48	0	1151874..1152170	-	98	145598313	-	YPDSF_1016	-	hypothetical protein
991	 41.57	-1	1152227..1152481	-	84	145598314	-	YPDSF_1017	-	hypothetical protein
992	 46.52	0	1152478..1153008	-	176	145598315	-	YPDSF_1018	-	hypothetical protein
993	 49.42	0	1153008..1154213	-	401	145598316	-	YPDSF_1019	-	hypothetical protein
994	 50.78	0	1154227..1155000	-	257	145598317	-	YPDSF_1020	-	hypothetical protein
995	 49.06	0	1155122..1156234	-	370	145598318	-	YPDSF_1021	-	hypothetical protein
996	 50.78	0	1156235..1156876	-	213	145598319	-	YPDSF_1022	-	hypothetical protein
997	 48.15	0	1156895..1157623	-	242	145598320	-	YPDSF_1023	-	hypothetical protein
998	 48.29	0	1157623..1159113	-	496	145598321	-	YPDSF_1024	-	hypothetical protein
999	 47.33	0	1159123..1159572	-	149	145598322	-	YPDSF_1025	-	hypothetical protein
1000	 47.96	0	1159603..1160238	-	211	145598323	-	YPDSF_1026	-	hypothetical protein
1001	 47.76	0	1160695..1161408	-	237	145598324	-	YPDSF_1027	-	phage regulatory protein
1002	 50.76	0	1161954..1162412	-	152	145598325	-	YPDSF_1028	-	prophage endopeptidase
1003	 51.07	0	1162397..1162909	-	170	145598326	-	YPDSF_1029	-	phage lysozyme
1004	 45.98	0	1163655..1163828	-	57	145598327	-	YPDSF_1030	-	hypothetical protein
1005	 42.91	-1	1164288..1164851	-	187	145598328	-	YPDSF_1031	-	hypothetical protein
1006	 43.85	0	1165122..1165511	-	129	145598329	-	YPDSF_1032	-	phage antitermination protein
1007	 47.03	0	1165512..1166117	-	201	145598330	-	YPDSF_1033	-	hypothetical protein
1008	 50.56	0	1166191..1166637	-	148	145598331	-	YPDSF_1034	-	hypothetical protein
1009	 50.23	0	1166718..1167362	+	214	145598332	-	YPDSF_1035	-	methyltransferase
1010	 50.38	0	1168090..1168869	-	259	145598333	-	YPDSF_1036	-	transposase/IS protein
1011	 52.79	0	1168869..1169891	-	340	145598334	-	YPDSF_1037	-	transposase for insertion sequence IS100
1012	 49.07	0	1169961..1171199	+	412	145598335	-	YPDSF_1038	-	hypothetical protein
1013	 44.07	0	1171226..1171672	-	148	145598336	-	YPDSF_1039	-	hypothetical protein
1014	 47.34	0	1171775..1172431	-	218	145598337	-	YPDSF_1040	-	hypothetical protein
1015	 46.59	0	1172502..1173587	-	361	145598338	-	YPDSF_1041	-	lipoprotein
1016	 43.59	0	1173728..1174000	-	90	145598339	-	YPDSF_1042	-	hypothetical protein
1017	 47.60	0	1174721..1175407	+	228	145598340	minC	YPDSF_1043	-	septum formation inhibitor
1018	 46.86	0	1175432..1176244	+	270	145598341	-	YPDSF_1044	-	cell division inhibitor MinD
1019	 44.81	0	1176248..1176517	+	89	145598342	minE	YPDSF_1045	-	cell division topological specificity factor MinE
1020	 47.72	0	1176754..1177914	-	386	145598343	-	YPDSF_1046	-	ribonuclease D
1021	 48.32	0	1178035..1179756	-	573	145598344	-	YPDSF_1047	-	long-chain-fatty-acid--CoA ligase
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.