version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 40 55.71 +1 48255..50207 + 650 145597364 - YPDSF_0040 - selenocysteinyl-tRNA-specific translation factor 41 35.90 -2 50967..51083 + 38 145597365 - YPDSF_0042 - membrane protein 42 49.55 0 51105..52313 - 402 145597366 - YPDSF_0043 - transposase for the IS285 insertion element 43 37.97 -2 52636..53217 - 193 145597367 - YPDSF_0044 - hypothetical protein 44 28.49 -2 53296..53481 - 61 145597368 - YPDSF_0045 - hypothetical protein 45 51.79 0 53927..55156 - 409 145597369 - YPDSF_0046 - multidrug translocase 46 46.44 0 55629..56414 - 261 145597370 - YPDSF_0047 - transposase for insertion sequence IS1661 47 49.14 0 57176..57934 - 252 145597371 - YPDSF_0048 - DNA-binding transcriptional repressor GlpR 48 50.30 0 57969..58805 - 278 145597372 - YPDSF_0049 - intramembrane serine protease GlpG 49 48.18 0 58823..59152 - 109 145597373 glpE YPDSF_0050 - thiosulfate sulfurtransferase 50 51.03 0 59527..62238 - 903 145597374 - YPDSF_0051 - transcriptional regulator MalT 51 49.46 0 62556..64961 + 801 145597375 - YPDSF_0052 - glycogen/starch/alpha-glucan phosphorylase 52 51.22 0 64974..67070 + 698 145597376 malQ YPDSF_0053 - 4-alpha-glucanotransferase 53 46.70 0 67399..67974 - 191 145597377 - YPDSF_0054 - putative DNA uptake protein 54 55.27 +1 68034..68735 - 233 145597378 - YPDSF_0055 - gluconate periplasmic binding protein 55 52.01 0 68801..69598 + 265 145597379 - YPDSF_0056 - biotin biosynthesis protein 56 44.07 0 69768..70037 + 89 145597380 - YPDSF_0057 - hypothetical protein 57 52.33 0 70175..70432 - 85 145597381 - YPDSF_0058 - hypothetical protein 58 51.08 0 70468..72783 - 771 145597382 feoB YPDSF_0059 - ferrous iron transport protein B 59 48.68 0 72875..73102 - 75 145597383 feoA YPDSF_0060 - ferrous iron transport protein A 60 54.17 +1 73626..76001 - 791 145597384 - YPDSF_0061 - hypothetical protein 61 49.22 0 76535..77050 + 171 145597385 greB YPDSF_0062 - transcription elongation factor GreB 62 52.22 0 77186..77905 + 239 145597386 ompR YPDSF_0063 - osmolarity response regulator 63 51.52 0 77902..79254 + 450 145597387 envZ YPDSF_0064 - osmolarity sensor protein 64 49.57 0 79409..81028 - 539 145597388 - YPDSF_0065 - phosphoenolpyruvate carboxykinase 65 49.21 0 81225..82106 - 293 145597389 hslO YPDSF_0066 - Hsp33-like chaperonin 66 52.21 0 82269..82676 - 135 145597390 - YPDSF_0067 - heat shock protein 15 67 48.02 0 82705..83385 - 226 145597391 - YPDSF_0068 - hypothetical protein 68 48.37 0 83529..85676 - 715 145597392 - YPDSF_0069 - membrane protein 69 47.44 0 86263..86808 + 181 145597393 nudE YPDSF_0070 - ADP-ribose diphosphatase NudE 70 51.76 0 86944..89499 - 851 145597394 mrcA YPDSF_0071 - peptidoglycan synthetase 71 52.06 0 89619..90515 + 298 145597395 - YPDSF_0072 - hypothetical protein 72 51.82 0 90515..91120 + 201 145597396 - YPDSF_0073 - hypothetical protein 73 49.44 0 91068..91694 + 208 145597397 - YPDSF_0074 - hypothetical protein 74 47.09 0 91660..92088 + 142 145597398 - YPDSF_0075 - membrane protein 75 41.79 -1 92091..92480 - 129 145597399 - YPDSF_0076 - hypothetical protein 76 48.12 0 92287..93639 + 450 145597400 - YPDSF_0077 - putative outer membrane porin HofQ 77 47.89 0 93988..94509 + 173 145597401 aroK YPDSF_0078 - shikimate kinase I 78 49.77 0 94566..95654 + 362 145597402 aroB YPDSF_0079 - 3-dehydroquinate synthase 79 48.59 0 95908..96897 + 329 145597403 - YPDSF_0080 - hypothetical protein 80 45.71 0 96981..97796 + 271 145597404 - YPDSF_0081 - DNA adenine methylase 81 49.71 0 98099..98776 + 225 145597405 - YPDSF_0082 - ribulose-phosphate 3-epimerase 82 51.79 0 98769..99467 + 232 162202303 - YPDSF_0083 - phosphoglycolate phosphatase 83 48.41 0 99469..100509 + 346 145597407 - YPDSF_0084 - tryptophanyl-tRNA synthetase 84 53.16 +1 100628..102049 - 473 145597408 cysG YPDSF_0085 - siroheme synthase 85 53.78 +1 102137..102943 - 268 145597409 - YPDSF_0086 - nitrite transporter NirC 86 51.38 0 103122..103448 - 108 145597410 nirD YPDSF_0087 - nitrite reductase small subunit 87 51.63 0 103445..105991 - 848 145597411 - YPDSF_0088 - nitrite reductase 88 51.66 0 106313..107611 + 432 145597412 - YPDSF_0089 - cytosine deaminase 89 47.76 0 107696..108880 - 394 145597413 - YPDSF_0090 - hypothetical protein 90 50.51 0 109366..111426 + 686 145597414 - YPDSF_0091 - membrane receptor protein 91 51.37 0 111539..112525 - 328 145597415 - YPDSF_0092 - LacI family transcriptional regulator 92 45.26 0 114596..115165 + 189 145597416 - YPDSF_0095 - peptidyl-prolyl cis-trans isomerase A (rotamase A) 93 51.95 0 115491..117032 + 513 145597417 - YPDSF_0096 - hypothetical protein 94 51.91 0 117275..117850 + 191 145597418 - YPDSF_0097 - para-aminobenzoate synthase component II 95 52.87 +1 117983..119200 + 405 145597419 argD YPDSF_0098 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 96 48.37 0 119426..121546 - 706 145597420 - YPDSF_0099 - hypothetical protein 97 46.76 0 121632..122264 - 210 145597421 - YPDSF_0100 - cAMP-regulatory protein 98 49.26 0 122600..123007 + 135 145597422 - YPDSF_0101 - hypothetical protein 99 33.80 -2 123079..123510 + 143 145597423 - YPDSF_0102 - hypothetical protein 100 49.54 0 123688..124557 - 289 145597424 - YPDSF_0103 - phosphoribulokinase 1 101 49.37 0 124706..124942 - 78 145597425 - YPDSF_0104 - hypothetical protein 102 51.27 0 124939..125919 - 326 145597426 - YPDSF_0105 - putative hydrolase 103 48.92 0 126021..126623 + 200 145597427 - YPDSF_0106 - ABC-transport protein 104 51.98 0 126826..127887 + 353 145597428 tauA YPDSF_0107 - taurine transporter substrate binding subunit 105 53.65 +1 127896..128663 + 255 145597429 tauB YPDSF_0108 - taurine transporter ATP-binding subunit 106 54.62 +1 128660..129514 + 284 145597430 - YPDSF_0109 - taurine transporter subunit 107 51.00 0 129511..130359 + 282 145597431 tauD YPDSF_0110 - taurine dioxygenase 108 49.39 0 131446..132435 - 329 145597432 - YPDSF_0113 - glycosyl transferase 109 51.27 0 132570..134492 - 640 145597433 - YPDSF_0114 - putative ABC transporter ATP-binding protein 110 49.18 0 134743..135291 + 182 145597434 - YPDSF_0115 - glutathione-regulated potassium-efflux system ancillary protein KefG 111 51.41 0 135295..137103 + 602 145597435 - YPDSF_0116 - glutathione-regulated potassium-efflux system protein KefB 112 45.95 0 137119..137340 + 73 145597436 - YPDSF_0117 - hypothetical protein 113 52.55 0 137435..138022 + 195 145597437 - YPDSF_0118 - FKBP-type peptidyl-prolyl cis-trans isomerase 114 48.86 0 138243..138461 - 72 145597438 - YPDSF_0119 - hypothetical protein 115 45.82 0 138776..139576 + 266 145597439 - YPDSF_0120 - FKBP-type peptidyl-prolyl cis-trans isomerase 116 44.40 0 139830..140552 + 240 145597440 - YPDSF_0121 - DNA-binding protein 117 52.53 0 140552..140947 + 131 145597441 - YPDSF_0122 - hypothetical protein 118 45.36 0 140947..141312 + 121 145597442 - YPDSF_0123 - hypothetical protein 119 43.06 -1 141332..141619 + 95 145597443 - YPDSF_0124 - tRNA 2-thiouridine synthesizing protein B 120 50.40 0 141757..142131 + 124 145597444 rpsL YPDSF_0125 - 30S ribosomal protein S12 121 47.98 0 142228..142698 + 156 145597445 - YPDSF_0126 - 30S ribosomal protein S7 122 48.08 0 142792..144900 + 702 145597446 - YPDSF_0127 - elongation factor G 123 48.19 0 144973..146157 + 394 145597447 - YPDSF_0128 - elongation factor Tu 124 45.97 0 146360..146818 + 152 145597448 - YPDSF_0129 - transposase for the IS1541 insertion element 125 44.93 0 146994..147200 + 68 145597449 - YPDSF_0130 - bacterioferritin-associated ferredoxin 126 38.61 -1 147279..147752 + 157 145597450 - YPDSF_0131 - bacterioferritin, iron storage and detoxification protein 127 52.56 0 148166..148477 + 103 145597451 - YPDSF_0132 - 30S ribosomal protein S10 128 48.89 0 148510..149139 + 209 145597452 rplC YPDSF_0133 - 50S ribosomal protein L3 129 50.17 0 149156..149761 + 201 145597453 rplD YPDSF_0134 - 50S ribosomal protein L4 130 48.51 0 149758..150060 + 100 145597454 rplW YPDSF_0135 - 50S ribosomal protein L23 131 51.52 0 150077..150901 + 274 145597455 rplB YPDSF_0136 - 50S ribosomal protein L2 132 50.54 0 150916..151194 + 92 145597456 rpsS YPDSF_0137 - 30S ribosomal protein S19 133 50.15 0 151209..151541 + 110 145597457 rplV YPDSF_0138 - 50S ribosomal protein L22 134 49.36 0 151559..152257 + 232 145597458 rpsC YPDSF_0139 - 30S ribosomal protein S3 135 50.85 0 152270..152680 + 136 145597459 rplP YPDSF_0140 - 50S ribosomal protein L16 136 50.00 0 152680..152871 + 63 145597460 - YPDSF_0141 - 50S ribosomal protein L29 137 46.67 0 152871..153125 + 84 145597461 rpsQ YPDSF_0142 - 30S ribosomal protein S17 138 50.27 0 153306..153677 + 123 145597462 rplN YPDSF_0143 - 50S ribosomal protein L14 139 46.03 0 153688..154002 + 104 145597463 rplX YPDSF_0144 - 50S ribosomal protein L24 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.