IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
726	 45.52	0	843868..844614	+	248	145598049	sufC	YPDSF_0746	-	cysteine desulfurase ATPase component
727	 49.77	0	844589..845914	+	441	145598050	-	YPDSF_0747	-	cysteine desulfurase activator complex subunit SufD
728	 51.84	0	845911..847131	+	406	145598051	-	YPDSF_0748	-	selenocysteine lyase
729	 47.75	0	847220..847642	+	140	145598052	-	YPDSF_0749	-	cysteine desufuration protein SufE
730	 49.71	0	847913..848932	+	339	145598053	-	YPDSF_0750	-	hypothetical protein
731	 50.38	0	848976..849755	-	259	145598054	-	YPDSF_0751	-	transposase/IS protein
732	 52.79	0	849755..850777	-	340	145598055	-	YPDSF_0752	-	transposase
733	 45.97	0	851359..851817	-	152	145598056	-	YPDSF_0753	-	transposase for the IS1541 insertion element
734	 48.55	0	852565..853977	-	470	145598057	-	YPDSF_0754	-	pyruvate kinase
735	 51.16	0	855008..856381	-	457	145598058	-	YPDSF_0755	-	multidrug efflux protein
736	 45.21	0	856630..857286	+	218	145598059	-	YPDSF_0756	-	riboflavin synthase subunit alpha
737	 46.53	0	857337..858488	-	383	145598060	-	YPDSF_0757	-	cyclopropane fatty acyl phospholipid synthase
738	 50.62	0	858968..860170	-	400	145598061	-	YPDSF_0758	-	inner membrane transport protein YdhC
739	 50.16	0	860460..861392	+	310	145598062	-	YPDSF_0759	-	putative DNA-binding transcriptional regulator
740	 50.10	0	861481..862506	-	341	145598063	-	YPDSF_0760	-	DNA-binding transcriptional repressor PurR
741	 45.25	0	863033..863611	-	192	145598064	-	YPDSF_0761	-	superoxide dismutase
742	 44.95	0	863989..864840	-	283	145598065	-	YPDSF_0762	-	hypothetical protein
743	 46.15	0	865280..865630	+	116	145598066	-	YPDSF_0763	-	hypothetical protein
744	 50.66	0	865939..866619	-	226	145598067	-	YPDSF_0764	-	ribonuclease T
745	 48.53	0	866698..867105	-	135	145598068	-	YPDSF_0765	-	lactoylglutathione lyase
746	 54.79	+1	867378..870332	+	984	145598069	-	YPDSF_0766	-	insecticial toxin
747	 50.91	0	870553..871650	-	365	145598070	-	YPDSF_0767	-	N-ethylmaleimide reductase
748	 50.33	0	871738..872337	-	199	145598071	-	YPDSF_0768	-	TetR family transcriptional regulator
749	 42.61	-1	872560..874197	-	545	145598072	-	YPDSF_0769	-	putative cell division protein
750	 46.99	0	874245..874610	+	121	145598073	-	YPDSF_0770	-	hypothetical protein
751	 51.06	0	874742..875638	+	298	145598074	-	YPDSF_0771	-	aldo/keto reductase
752	 40.28	-1	876436..876867	+	143	145598075	-	YPDSF_0772	-	transcriptional regulator SlyA
753	 53.63	+1	877011..877478	-	155	145598076	-	YPDSF_0773	-	lipoprotein
754	 52.02	0	878034..879146	+	370	145598077	anmK	YPDSF_0774	-	anhydro-N-acetylmuramic acid kinase
755	 42.77	-1	879201..879518	+	105	145598078	-	YPDSF_0775	-	lipoprotein
756	 48.96	0	879540..880262	+	240	145598079	-	YPDSF_0776	-	pyridoxamine 5'-phosphate oxidase
757	 48.86	0	880444..881718	+	424	145598080	-	YPDSF_0777	-	tyrosyl-tRNA synthetase
758	 50.29	0	881873..882733	+	286	145598081	-	YPDSF_0778	-	pyridoxamine kinase
759	 45.54	0	882793..883398	-	201	145598082	-	YPDSF_0779	-	glutathionine S-transferase
760	 43.56	0	883643..883906	-	87	145598083	-	YPDSF_0780	-	hypothetical protein
761	 50.76	0	884152..884742	-	196	145598084	-	YPDSF_0781	-	hypothetical protein
762	 48.07	0	884997..886496	-	499	145598085	tppB	YPDSF_0782	-	putative tripeptide transporter permease
763	 50.43	0	887139..888419	-	426	145598086	-	YPDSF_0783	-	hypothetical protein
764	 49.63	0	888809..889624	-	271	145598087	-	YPDSF_0784	-	peptide transport system ATP-binding protein
765	 49.24	0	889624..890616	-	330	145598088	-	YPDSF_0785	-	peptide transport system ATP-binding protein
766	 51.63	0	890616..891506	-	296	145598089	-	YPDSF_0786	-	peptide transport system permease protein
767	 50.72	0	891493..892458	-	321	145598090	-	YPDSF_0787	-	peptide transport system permease protein
768	 49.00	0	892455..894101	-	548	145598091	-	YPDSF_0788	-	peptide transport periplasmic protein precursor
769	 45.75	0	894808..895266	+	152	145598092	-	YPDSF_0789	-	transposase for the IS1541 insertion element
770	 51.31	0	895431..896459	-	342	145598093	pspF	YPDSF_0790	-	phage shock protein operon transcriptional activator
771	 48.05	0	896704..897369	+	221	145598094	-	YPDSF_0791	-	phage shock protein PspA
772	 42.54	-1	897531..897758	+	75	145598095	pspB	YPDSF_0792	-	phage shock protein B
773	 50.56	0	897758..898117	+	119	145598096	-	YPDSF_0793	-	DNA-binding transcriptional activator PspC
774	 47.74	0	898202..898444	+	80	145598097	-	YPDSF_0794	-	peripheral inner membrane phage-shock protein
775	 49.57	0	898425..899822	+	465	145598098	-	YPDSF_0795	-	hypothetical protein
776	 52.64	0	899819..900880	+	353	145598099	-	YPDSF_0796	-	hypothetical protein
777	 49.24	0	900890..901348	-	152	145598100	-	YPDSF_0797	-	hypothetical protein
778	 51.45	0	901410..901856	-	148	145598101	-	YPDSF_0798	-	hypothetical protein
779	 48.54	0	902192..903769	+	525	145598102	-	YPDSF_0799	-	DNA-binding transcriptional regulator TyrR
780	 45.75	0	903916..904374	-	152	145598103	-	YPDSF_0800	-	transposase for the IS1541 insertion element
781	 50.38	0	904523..905302	-	259	145598104	-	YPDSF_0801	-	transposase/IS protein
782	 52.79	0	905302..906324	-	340	145598105	-	YPDSF_0802	-	transposase
783	 49.21	0	906586..907089	-	167	145598106	tpx	YPDSF_0803	-	thiol peroxidase
784	 52.10	0	907252..908226	+	324	145598107	-	YPDSF_0804	-	mandelate racemase / muconate lactonizing protein
785	 50.06	0	908268..909038	-	256	145598108	-	YPDSF_0805	-	murein peptide amidase A
786	 43.54	0	909416..911032	+	538	145598109	-	YPDSF_0806	-	periplasmic murein peptide-binding protein
787	 46.15	0	911245..912258	+	337	145598110	zntB	YPDSF_0807	-	zinc transporter
788	 45.71	0	912373..912582	+	69	145598111	-	YPDSF_0808	-	hypothetical protein
789	 37.26	-2	912632..913471	-	279	145598112	-	YPDSF_0809	-	regulatory protein
790	 41.49	-1	913783..914787	-	334	145598113	-	YPDSF_0810	-	hypothetical protein
791	 44.16	0	915058..915999	-	313	145598114	-	YPDSF_0811	-	C32 tRNA thiolase
792	 50.99	0	916274..919807	-	1177	145598115	-	YPDSF_0812	-	pyruvate-flavodoxin oxidoreductase
793	 45.95	0	920286..920618	+	110	145598116	-	YPDSF_0813	-	quaternary ammonium compound-resistance protein
794	 43.18	-1	920678..921337	-	219	145598117	-	YPDSF_0814	-	putative Mg(2+) transport ATPase
795	 44.93	0	921550..921963	+	137	145598118	-	YPDSF_0815	-	lipoprotein
796	 43.71	0	922021..922473	-	150	145598119	-	YPDSF_0816	-	heat-inducible protein
797	 46.02	0	922543..923535	-	330	145598120	-	YPDSF_0817	-	D-lactate dehydrogenase
798	 50.24	0	923801..926497	+	898	145598121	-	YPDSF_0818	-	hypothetical protein
799	 43.08	-1	926494..926688	+	64	145598122	-	YPDSF_0819	-	lipoprotein
800	 51.08	0	926698..927069	+	123	145598123	-	YPDSF_0820	-	hypothetical protein
801	 50.36	0	927270..928661	-	463	145598124	-	YPDSF_0821	-	mannitol dehydrogenase
802	 53.29	+1	928871..929827	+	318	145598125	-	YPDSF_0822	-	transcriptional regulatory protein
803	 49.17	0	929948..930553	-	201	145598126	-	YPDSF_0823	-	azoreductase
804	 49.15	0	931021..934863	+	1280	145598127	-	YPDSF_0824	-	ATP-dependent RNA helicase HrpA
805	 45.99	0	935528..935851	+	107	145598128	-	YPDSF_0825	-	DNA-binding phage-related protein
806	 45.88	0	935907..936743	-	278	145598129	-	YPDSF_0826	-	pepetidase
807	 47.47	0	937077..937373	-	98	145598130	-	YPDSF_0827	-	acid shock protein
808	 44.50	0	937977..938531	+	184	145598131	-	YPDSF_0828	-	membrane protein
809	 40.59	-1	938557..939135	+	192	145598132	-	YPDSF_0829	-	hypothetical protein
810	 39.78	-1	939962..940318	-	118	145598133	-	YPDSF_0831	-	hypothetical protein
811	 56.11	+1	940321..942945	-	874	145598134	-	YPDSF_0832	-	insecticidal toxin complex
812	 45.75	0	943915..944373	+	152	145598135	-	YPDSF_0833	-	transposase for the IS1541 insertion element
813	 47.20	0	944495..945994	-	499	145598136	-	YPDSF_0834	-	carboxypeptidase
814	 47.50	0	946088..947365	-	425	145598137	-	YPDSF_0835	-	sensor protein RstB
815	 48.06	0	947393..948139	-	248	145598138	-	YPDSF_0836	-	DNA-binding transcriptional regulator RstA
816	 43.17	-1	948436..948852	+	138	145598139	-	YPDSF_0837	-	hypothetical protein
817	 48.78	0	948876..950267	-	463	145598140	-	YPDSF_0838	-	amino acid antiporter
818	 47.27	0	950537..951490	-	317	145598141	-	YPDSF_0839	-	hypothetical protein
819	 51.34	0	952020..953546	+	508	145598142	pntA	YPDSF_0840	-	NAD(P) transhydrogenase subunit alpha
820	 48.10	0	953619..955013	+	464	145598143	pntB	YPDSF_0841	-	pyridine nucleotide transhydrogenase
821	 45.77	0	955288..956244	-	318	145598144	-	YPDSF_0842	-	universal stress protein UspE
822	 44.75	0	956379..957131	-	250	145598145	-	YPDSF_0843	-	fumarate/nitrate reduction transcriptional regulator
823	 47.78	0	957204..957722	-	172	145598146	-	YPDSF_0844	-	methylated-DNA--protein-cysteine methyltransferase
824	 50.14	0	957963..959408	+	481	145598147	-	YPDSF_0845	-	alkaline phosphatase
825	 47.39	0	959954..962350	+	798	145598148	-	YPDSF_0846	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.