IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
623	 51.64	0	718004..718369	-	121	145597946	-	YPDSF_0640	-	hypothetical protein
624	 45.58	0	718638..719780	+	380	145597947	-	YPDSF_0641	-	hypothetical protein
625	 49.45	0	720287..721825	+	512	145597948	-	YPDSF_0642	-	hypothetical protein
626	 38.97	-1	721822..722016	+	64	145597949	-	YPDSF_0643	-	hypothetical protein
627	 46.04	0	723297..725492	+	731	145597950	-	YPDSF_0644	-	hypothetical protein
628	 51.17	0	725462..726229	+	255	145597951	-	YPDSF_0645	-	hypothetical protein
629	 35.13	-2	726834..727613	+	259	145597952	-	YPDSF_0646	-	hypothetical protein
630	 46.73	0	727830..728135	+	101	145597953	-	YPDSF_0647	-	hypothetical protein
631	 49.53	0	728234..728554	-	106	145597954	-	YPDSF_0648	-	hypothetical protein
632	 51.10	0	728554..729234	-	226	145597955	-	YPDSF_0649	-	hypothetical protein
633	 48.83	0	729658..730515	-	285	145597956	-	YPDSF_0650	-	hypothetical protein
634	 31.41	-2	730891..731409	-	172	145597957	-	YPDSF_0651	-	hypothetical protein
635	 47.50	0	732188..733189	-	333	145597958	-	YPDSF_0652	-	sugar-binding periplasmic protein
636	 48.56	0	733624..734628	-	334	145597959	-	YPDSF_0653	-	sugar transport system permease
637	 44.33	0	734700..736208	-	502	145597960	-	YPDSF_0654	-	sugar transport ATP-binding protein
638	 48.32	0	736747..737847	-	366	145597961	-	YPDSF_0655	-	sugar transport ATP-binding protein
639	 47.57	0	738204..739439	+	411	145597962	-	YPDSF_0656	-	sugar-binding protein
640	 51.06	0	739599..739739	+	46	145597963	-	YPDSF_0657	-	ABC maltodextrin transporter, permease subunit
641	 45.03	0	739712..740908	+	398	145597964	-	YPDSF_0658	-	maltodextrin transport permease
642	 43.54	0	740920..741771	+	283	145597965	-	YPDSF_0659	-	maltodextrin permease protein
643	 45.97	0	741776..742978	+	400	145597966	-	YPDSF_0660	-	galactosidase
644	 47.30	0	745896..747155	-	419	145597967	-	YPDSF_0664	-	maltoporin
645	 48.32	0	747427..748500	+	357	145597968	lacI	YPDSF_0665	-	lac repressor
646	 50.38	0	748813..751188	-	791	145597969	-	YPDSF_0666	-	glucosidase
647	 49.46	0	751339..752646	-	435	145597970	-	YPDSF_0667	-	sugar transporter
648	 48.11	0	753040..754122	+	360	145597971	-	YPDSF_0668	-	LacI-family regulatory protein
649	 49.74	0	754363..754941	-	192	145597972	-	YPDSF_0669	-	ThiJ/PfpI-family thiamine biogenesis protein
650	 50.18	0	754965..755819	-	284	145597973	gatY	YPDSF_0670	-	tagatose-bisphosphate aldolase
651	 49.60	0	755930..757417	-	495	145597974	-	YPDSF_0671	-	hypothetical protein
652	 48.63	0	757540..759147	-	535	145597975	-	YPDSF_0672	-	sulfatase
653	 50.45	0	759168..760394	-	408	145597976	-	YPDSF_0673	-	regulatory protein
654	 54.01	+1	760638..761696	-	352	145597977	-	YPDSF_0674	-	hypothetical protein
655	 53.17	+1	761712..762467	-	251	145597978	-	YPDSF_0675	-	2-deoxy-D-gluconate 3-dehydrogenase
656	 56.56	+1	762663..763829	-	388	145597979	-	YPDSF_0676	-	acetylglucosamine-6-phosphate deacetylase
657	 50.57	0	763832..764272	-	146	145597980	-	YPDSF_0677	-	PTS permease protein
658	 51.07	0	764358..765248	-	296	145597981	-	YPDSF_0678	-	PTS permease protein
659	 51.33	0	765238..766026	-	262	145597982	-	YPDSF_0679	-	PTS permease protein
660	 50.80	0	766073..766570	-	165	145597983	-	YPDSF_0680	-	PTS transport protein
661	 47.22	0	766588..767754	-	388	145597984	-	YPDSF_0681	-	phosphosugar isomerase
662	 49.42	0	767751..769049	-	432	145597985	-	YPDSF_0682	-	tagatose 6-phosphate kinase
663	 47.88	0	769099..769875	-	258	145597986	-	YPDSF_0683	-	DeoR family regulatory protein
664	 48.39	0	770715..772268	+	517	145597987	-	YPDSF_0684	-	sulfatase
665	 46.67	0	772720..773154	-	144	145597988	-	YPDSF_0685	-	transposase
666	 52.79	0	773211..774233	+	340	145597989	-	YPDSF_0686	-	transposase for insertion sequence IS100
667	 50.38	0	774233..775012	+	259	145597990	-	YPDSF_0687	-	transposase/IS protein
668	 49.29	0	775357..778470	-	1037	145597991	-	YPDSF_0688	-	hypothetical protein
669	 42.24	-1	778540..780672	-	710	145597992	-	YPDSF_0689	-	hypothetical protein
670	 45.53	0	780840..781790	-	316	145597993	-	YPDSF_0690	-	hypothetical protein
671	 44.34	0	782393..782701	-	102	145597994	-	YPDSF_0691	-	hypothetical protein
672	 42.20	-1	783077..783832	+	251	145597995	-	YPDSF_0692	-	putative carbonic anhydrase
673	 28.28	-2	785029..785562	+	177	145597996	-	YPDSF_0693	-	general secretion pathway protein C
674	 33.33	-2	785643..787565	+	640	145597997	-	YPDSF_0694	-	general secretion pathway protein D
675	 38.99	-1	787712..789073	+	453	145597998	-	YPDSF_0695	-	general secretion pathway protein E
676	 34.61	-2	789245..790261	+	338	145597999	-	YPDSF_0696	-	general protein secretion protein
677	 39.50	-1	790281..790718	+	145	145598000	-	YPDSF_0697	-	general secretion pathway protein G
678	 33.67	-2	790675..791265	+	196	145598001	-	YPDSF_0698	-	general secretion pathway protein H
679	 34.67	-2	791348..791647	+	99	145598002	-	YPDSF_0699	-	general secretion pathway protein I
680	 31.45	-2	792245..793201	+	318	145598003	-	YPDSF_0700	-	general secretion pathway protein K
681	 31.99	-2	793185..794375	+	396	145598004	-	YPDSF_0701	-	general secretion pathway protein L
682	 28.14	-2	794372..794833	+	153	145598005	-	YPDSF_0702	-	hypothetical protein
683	 35.82	-2	794859..795701	+	280	145598006	-	YPDSF_0703	-	prepilin peptidase
684	 30.05	-2	795685..796050	-	121	145598007	-	YPDSF_0704	-	lipoprotein
685	 49.63	0	796804..798012	+	402	145598008	-	YPDSF_0705	-	transposase for the IS285 insertion element
686	 49.55	0	798247..798912	-	221	145598009	-	YPDSF_0706	-	2-deoxyglucose-6-phosphatase
687	 42.52	-1	799323..799877	+	184	145598010	-	YPDSF_0707	-	yfeABCD locus regulator
688	 47.95	0	800006..800881	-	291	145598011	-	YPDSF_0708	-	hypothetical protein
689	 40.85	-1	800906..801118	-	70	145598012	-	YPDSF_0709	-	membrane protein
690	 46.76	0	801186..802079	-	297	145598013	-	YPDSF_0710	-	chelated iron transport system membrane protein
691	 47.01	0	802076..802960	-	294	145598014	-	YPDSF_0711	-	chelated iron transport system membrane protein
692	 46.58	0	802960..803850	-	296	145598015	-	YPDSF_0712	-	ATP-binding transport protein
693	 43.96	0	803847..804815	-	322	145598016	-	YPDSF_0713	-	periplasmic-binding protein
694	 47.06	0	805027..805689	+	220	145598017	-	YPDSF_0714	-	membrane-bound lytic murein transglycosylase
695	 43.86	0	805811..806494	-	227	145598018	-	YPDSF_0715	-	multiple drug resistance protein MarC
696	 42.72	-1	807823..808035	-	70	145598019	-	YPDSF_0716	-	hypothetical protein
697	 47.33	0	808426..810354	+	642	145598020	-	YPDSF_0717	-	threonyl-tRNA synthetase
698	 47.58	0	810559..810909	+	116	145598021	-	YPDSF_0718	-	translation initiation factor IF-3
699	 45.96	0	811006..811203	+	65	145598022	rpmI	YPDSF_0719	-	50S ribosomal protein L35
700	 49.86	0	811241..811597	+	118	145598023	rplT	YPDSF_0720	-	50S ribosomal protein L20
701	 47.56	0	812096..813079	+	327	145598024	pheS	YPDSF_0721	-	phenylalanyl-tRNA synthetase subunit alpha
702	 48.53	0	813093..815480	+	795	145598025	pheT	YPDSF_0722	-	phenylalanyl-tRNA synthetase subunit beta
703	 48.15	0	815485..815781	+	98	145598026	ihfA	YPDSF_0723	-	integration host factor subunit alpha
704	 49.05	0	816154..816573	+	139	145598027	-	YPDSF_0724	-	hypothetical protein
705	 48.58	0	816785..817807	+	340	145598028	-	YPDSF_0725	-	vtamin B12-transporter permease
706	 44.50	0	817877..818431	+	184	145598029	-	YPDSF_0726	-	putative glutathione peroxidase
707	 47.04	0	818456..819214	+	252	145598030	-	YPDSF_0727	-	vitamin B12-transporter ATPase
708	 48.40	0	819564..820718	+	384	145598031	-	YPDSF_0728	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
709	 46.24	0	820705..821688	+	327	145598032	-	YPDSF_0729	-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
710	 45.71	0	821685..823688	+	667	145598033	-	YPDSF_0730	-	bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
711	 49.23	0	823685..824590	+	301	145598034	-	YPDSF_0731	-	hypothetical protein
712	 45.11	0	824587..826251	+	554	145598035	arnT	YPDSF_0732	-	4-amino-4-deoxy-L-arabinose transferase
713	 49.86	0	826248..826592	+	114	145598036	-	YPDSF_0733	-	hypothetical protein
714	 42.12	-1	826589..826975	+	128	145598037	-	YPDSF_0734	-	hypothetical protein
715	 46.88	0	827255..827719	+	154	145598038	-	YPDSF_0735	-	lipoprotein
716	 45.03	0	827844..828860	+	338	145598039	lplA	YPDSF_0736	-	lipoate-protein ligase A
717	 49.04	0	828912..830375	+	487	145598040	-	YPDSF_0737	-	hypothetical protein
718	 50.53	0	830544..831590	-	348	145598041	-	YPDSF_0738	-	phospho-2-dehydro-3-deoxyheptonate aldolase
719	 47.81	0	831747..832568	-	273	145598042	-	YPDSF_0739	-	hypothetical protein
720	 50.19	0	832867..835251	+	794	145598043	-	YPDSF_0740	-	phosphoenolpyruvate synthase
721	 48.41	0	835851..836891	-	346	145598044	-	YPDSF_0741	-	putative inner membrane protein
722	 50.67	0	837575..840631	+	1018	145598045	-	YPDSF_0742	-	hypothetical protein
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.