IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
588	 51.45	0	680627..681940	+	437	145597911	-	YPDSF_0604	-	proline aminopeptidase P II
589	 55.05	+1	682026..683204	+	392	145597912	-	YPDSF_0605	-	2-octaprenyl-6-methoxyphenyl hydroxylase
590	 53.94	+1	683254..684597	+	447	145597913	-	YPDSF_0606	-	hypothetical protein
591	 50.55	0	685318..686415	+	365	145597914	gcvT	YPDSF_0607	-	glycine cleavage system aminomethyltransferase T
592	 49.35	0	686484..686870	+	128	145597915	-	YPDSF_0608	-	glycine cleavage system protein H
593	 51.46	0	687082..689961	+	959	145597916	-	YPDSF_0609	-	glycine dehydrogenase
594	 42.24	-1	690339..690776	+	145	145597917	-	YPDSF_0610	-	hypothetical protein
595	 30.16	-2	691147..691272	+	41	145597918	-	YPDSF_0611	-	hypothetical protein
596	 30.30	-2	691824..691988	+	54	145597919	-	YPDSF_0612	-	hypothetical protein
597	 43.21	-1	694065..695168	+	367	145597920	-	YPDSF_0614	-	hypothetical protein
598	 50.28	0	695370..696071	+	233	145597921	-	YPDSF_0615	-	hemolysin III
599	 45.18	0	696329..696826	+	165	145597922	-	YPDSF_0616	-	hypothetical protein
600	 51.96	0	696899..697891	-	330	145597923	-	YPDSF_0617	-	putative global regulator
601	 45.32	0	698208..698474	+	88	145597924	-	YPDSF_0618	-	hypothetical protein
602	 52.11	0	698455..698880	+	141	145597925	-	YPDSF_0619	-	hypothetical protein
603	 49.64	0	698880..699578	+	232	145597926	-	YPDSF_0620	-	DNA-binding response regulator CreB
604	 50.88	0	699603..701021	+	472	145597927	-	YPDSF_0621	-	sensory histidine kinase CreC
605	 45.77	0	701121..702599	+	492	145597928	-	YPDSF_0622	-	hypothetical protein
606	 45.53	0	702689..703270	-	193	145597929	-	YPDSF_0623	-	flavodoxin FldB
607	 50.22	0	703314..704213	+	299	145597930	xerD	YPDSF_0624	-	site-specific tyrosine recombinase XerD
608	 45.61	0	704244..704960	+	238	145597931	-	YPDSF_0625	-	thiol:disulfide interchange protein DsbC
609	 52.88	+1	704967..706700	+	577	145597932	-	YPDSF_0626	-	ssDNA exonuclease RecJ
610	 46.73	0	707045..707977	+	310	145597933	prfB	YPDSF_0627	-	peptide chain release factor 2
611	 47.96	0	707987..709504	+	505	145597934	lysS	YPDSF_0628	-	lysyl-tRNA synthetase
612	 48.56	0	709937..711151	+	404	145597935	-	YPDSF_0629	-	integrase
613	 46.77	0	711233..711418	-	61	145597936	-	YPDSF_0630	-	hypothetical protein
614	 57.14	+1	711519..711644	-	41	145597937	-	YPDSF_0631	-	hypothetical protein
615	 44.08	0	712339..712701	+	120	145597938	-	YPDSF_0632	-	DNA binding protein
616	 39.06	-1	712865..713161	+	98	145597939	-	YPDSF_0633	-	hypothetical protein
617	 45.61	0	713161..713559	+	132	145597940	-	YPDSF_0634	-	hypothetical protein
618	 55.15	+1	713959..716250	-	763	145597941	-	YPDSF_0635	-	primase
619	 43.12	-1	716550..716876	+	108	145597942	-	YPDSF_0636	-	hypothetical protein
620	 41.79	-1	717035..717235	-	66	145597943	-	YPDSF_0637	-	regulatory protein
621	 57.06	+1	717417..717749	-	110	145597944	-	YPDSF_0638	-	hypothetical protein
622	 32.49	-2	717755..717991	-	78	145597945	-	YPDSF_0639	-	hypothetical protein
623	 51.64	0	718004..718369	-	121	145597946	-	YPDSF_0640	-	hypothetical protein
624	 45.58	0	718638..719780	+	380	145597947	-	YPDSF_0641	-	hypothetical protein
625	 49.45	0	720287..721825	+	512	145597948	-	YPDSF_0642	-	hypothetical protein
626	 38.97	-1	721822..722016	+	64	145597949	-	YPDSF_0643	-	hypothetical protein
627	 46.04	0	723297..725492	+	731	145597950	-	YPDSF_0644	-	hypothetical protein
628	 51.17	0	725462..726229	+	255	145597951	-	YPDSF_0645	-	hypothetical protein
629	 35.13	-2	726834..727613	+	259	145597952	-	YPDSF_0646	-	hypothetical protein
630	 46.73	0	727830..728135	+	101	145597953	-	YPDSF_0647	-	hypothetical protein
631	 49.53	0	728234..728554	-	106	145597954	-	YPDSF_0648	-	hypothetical protein
632	 51.10	0	728554..729234	-	226	145597955	-	YPDSF_0649	-	hypothetical protein
633	 48.83	0	729658..730515	-	285	145597956	-	YPDSF_0650	-	hypothetical protein
634	 31.41	-2	730891..731409	-	172	145597957	-	YPDSF_0651	-	hypothetical protein
635	 47.50	0	732188..733189	-	333	145597958	-	YPDSF_0652	-	sugar-binding periplasmic protein
636	 48.56	0	733624..734628	-	334	145597959	-	YPDSF_0653	-	sugar transport system permease
637	 44.33	0	734700..736208	-	502	145597960	-	YPDSF_0654	-	sugar transport ATP-binding protein
638	 48.32	0	736747..737847	-	366	145597961	-	YPDSF_0655	-	sugar transport ATP-binding protein
639	 47.57	0	738204..739439	+	411	145597962	-	YPDSF_0656	-	sugar-binding protein
640	 51.06	0	739599..739739	+	46	145597963	-	YPDSF_0657	-	ABC maltodextrin transporter, permease subunit
641	 45.03	0	739712..740908	+	398	145597964	-	YPDSF_0658	-	maltodextrin transport permease
642	 43.54	0	740920..741771	+	283	145597965	-	YPDSF_0659	-	maltodextrin permease protein
643	 45.97	0	741776..742978	+	400	145597966	-	YPDSF_0660	-	galactosidase
644	 47.30	0	745896..747155	-	419	145597967	-	YPDSF_0664	-	maltoporin
645	 48.32	0	747427..748500	+	357	145597968	lacI	YPDSF_0665	-	lac repressor
646	 50.38	0	748813..751188	-	791	145597969	-	YPDSF_0666	-	glucosidase
647	 49.46	0	751339..752646	-	435	145597970	-	YPDSF_0667	-	sugar transporter
648	 48.11	0	753040..754122	+	360	145597971	-	YPDSF_0668	-	LacI-family regulatory protein
649	 49.74	0	754363..754941	-	192	145597972	-	YPDSF_0669	-	ThiJ/PfpI-family thiamine biogenesis protein
650	 50.18	0	754965..755819	-	284	145597973	gatY	YPDSF_0670	-	tagatose-bisphosphate aldolase
651	 49.60	0	755930..757417	-	495	145597974	-	YPDSF_0671	-	hypothetical protein
652	 48.63	0	757540..759147	-	535	145597975	-	YPDSF_0672	-	sulfatase
653	 50.45	0	759168..760394	-	408	145597976	-	YPDSF_0673	-	regulatory protein
654	 54.01	+1	760638..761696	-	352	145597977	-	YPDSF_0674	-	hypothetical protein
655	 53.17	+1	761712..762467	-	251	145597978	-	YPDSF_0675	-	2-deoxy-D-gluconate 3-dehydrogenase
656	 56.56	+1	762663..763829	-	388	145597979	-	YPDSF_0676	-	acetylglucosamine-6-phosphate deacetylase
657	 50.57	0	763832..764272	-	146	145597980	-	YPDSF_0677	-	PTS permease protein
658	 51.07	0	764358..765248	-	296	145597981	-	YPDSF_0678	-	PTS permease protein
659	 51.33	0	765238..766026	-	262	145597982	-	YPDSF_0679	-	PTS permease protein
660	 50.80	0	766073..766570	-	165	145597983	-	YPDSF_0680	-	PTS transport protein
661	 47.22	0	766588..767754	-	388	145597984	-	YPDSF_0681	-	phosphosugar isomerase
662	 49.42	0	767751..769049	-	432	145597985	-	YPDSF_0682	-	tagatose 6-phosphate kinase
663	 47.88	0	769099..769875	-	258	145597986	-	YPDSF_0683	-	DeoR family regulatory protein
664	 48.39	0	770715..772268	+	517	145597987	-	YPDSF_0684	-	sulfatase
665	 46.67	0	772720..773154	-	144	145597988	-	YPDSF_0685	-	transposase
666	 52.79	0	773211..774233	+	340	145597989	-	YPDSF_0686	-	transposase for insertion sequence IS100
667	 50.38	0	774233..775012	+	259	145597990	-	YPDSF_0687	-	transposase/IS protein
668	 49.29	0	775357..778470	-	1037	145597991	-	YPDSF_0688	-	hypothetical protein
669	 42.24	-1	778540..780672	-	710	145597992	-	YPDSF_0689	-	hypothetical protein
670	 45.53	0	780840..781790	-	316	145597993	-	YPDSF_0690	-	hypothetical protein
671	 44.34	0	782393..782701	-	102	145597994	-	YPDSF_0691	-	hypothetical protein
672	 42.20	-1	783077..783832	+	251	145597995	-	YPDSF_0692	-	putative carbonic anhydrase
673	 28.28	-2	785029..785562	+	177	145597996	-	YPDSF_0693	-	general secretion pathway protein C
674	 33.33	-2	785643..787565	+	640	145597997	-	YPDSF_0694	-	general secretion pathway protein D
675	 38.99	-1	787712..789073	+	453	145597998	-	YPDSF_0695	-	general secretion pathway protein E
676	 34.61	-2	789245..790261	+	338	145597999	-	YPDSF_0696	-	general protein secretion protein
677	 39.50	-1	790281..790718	+	145	145598000	-	YPDSF_0697	-	general secretion pathway protein G
678	 33.67	-2	790675..791265	+	196	145598001	-	YPDSF_0698	-	general secretion pathway protein H
679	 34.67	-2	791348..791647	+	99	145598002	-	YPDSF_0699	-	general secretion pathway protein I
680	 31.45	-2	792245..793201	+	318	145598003	-	YPDSF_0700	-	general secretion pathway protein K
681	 31.99	-2	793185..794375	+	396	145598004	-	YPDSF_0701	-	general secretion pathway protein L
682	 28.14	-2	794372..794833	+	153	145598005	-	YPDSF_0702	-	hypothetical protein
683	 35.82	-2	794859..795701	+	280	145598006	-	YPDSF_0703	-	prepilin peptidase
684	 30.05	-2	795685..796050	-	121	145598007	-	YPDSF_0704	-	lipoprotein
685	 49.63	0	796804..798012	+	402	145598008	-	YPDSF_0705	-	transposase for the IS285 insertion element
686	 49.55	0	798247..798912	-	221	145598009	-	YPDSF_0706	-	2-deoxyglucose-6-phosphatase
687	 42.52	-1	799323..799877	+	184	145598010	-	YPDSF_0707	-	yfeABCD locus regulator
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.