version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 13 48.82 0 13371..13835 + 154 145597337 - YPDSF_0013 - heat shock chaperone IbpB 14 51.18 0 14208..15866 + 552 145597338 - YPDSF_0014 - hypothetical protein 15 47.85 0 15979..17349 - 456 145597339 avtA YPDSF_0015 - valine--pyruvate transaminase 16 52.52 0 18557..20620 - 687 145597340 malS YPDSF_0016 - periplasmic alpha-amylase precursor 17 51.17 0 20909..21889 - 326 145597341 - YPDSF_0017 - D-isomer specific 2-hydroxyacid dehydrogenase 18 53.49 +1 22408..23052 + 214 145597342 - YPDSF_0018 - hypothetical protein 19 54.24 +1 23183..23842 - 219 145597343 - YPDSF_0019 - putative outer membrane lipoprotein 20 51.97 0 24200..24655 - 151 145597344 - YPDSF_0020 - hypothetical protein 21 47.99 0 24652..25224 - 190 145597345 - YPDSF_0021 - DNA-3-methyladenine glycosylase 22 52.79 0 25552..26466 + 304 145597346 glyQ YPDSF_0022 - glycyl-tRNA synthetase subunit alpha 23 52.32 0 26476..28545 + 689 145597347 glyS YPDSF_0023 - glycyl-tRNA synthetase subunit beta 24 49.31 0 29018..29737 + 239 145597348 - YPDSF_0024 - hypothetical protein 25 51.35 0 30387..32318 + 643 145597349 - YPDSF_0025 - PTS system, mannitol-specific IIABC component 26 51.20 0 32455..33618 + 387 145597350 - YPDSF_0026 - mannitol-1-phosphate 5-dehydrogenase 27 48.47 0 33825..34379 + 184 145597351 mtlR YPDSF_0027 - mannitol repressor protein 28 46.78 0 34628..34984 + 118 145597352 - YPDSF_0028 - hypothetical protein 29 40.46 -1 35153..35629 - 158 145597353 - YPDSF_0029 - hypothetical protein 30 38.96 -1 36262..36492 - 76 145597354 - YPDSF_0030 - membrane protein 31 49.23 0 36682..38631 - 649 145597355 - YPDSF_0031 - methyl-accepting chemotaxis protein II 32 51.76 0 38975..39598 - 207 145597356 - YPDSF_0032 - superoxide dismutase 33 53.82 +1 40034..40858 - 274 145597357 - YPDSF_0033 - formate dehydrogenase accessory protein 34 52.38 0 41055..41642 + 195 145597358 - YPDSF_0034 - twin-arginine translocation pathway signal 35 51.66 0 41691..44102 + 803 145597359 - YPDSF_0035 - hypothetical protein 36 53.91 +1 44115..45086 + 323 145597360 - YPDSF_0036 - formate dehydrogenase-O, iron-sulfur subunit 37 50.52 0 45083..45757 + 224 145597361 - YPDSF_0037 - formate dehydrogenase-O subunit gamma 38 49.57 0 45757..46686 + 309 145597362 - YPDSF_0038 - formate dehydrogenase accessory protein FdhE 39 54.79 +1 46870..48258 + 462 145597363 - YPDSF_0039 - selenocysteine synthase 40 55.71 +1 48255..50207 + 650 145597364 - YPDSF_0040 - selenocysteinyl-tRNA-specific translation factor 41 35.90 -2 50967..51083 + 38 145597365 - YPDSF_0042 - membrane protein 42 49.55 0 51105..52313 - 402 145597366 - YPDSF_0043 - transposase for the IS285 insertion element 43 37.97 -2 52636..53217 - 193 145597367 - YPDSF_0044 - hypothetical protein 44 28.49 -2 53296..53481 - 61 145597368 - YPDSF_0045 - hypothetical protein 45 51.79 0 53927..55156 - 409 145597369 - YPDSF_0046 - multidrug translocase 46 46.44 0 55629..56414 - 261 145597370 - YPDSF_0047 - transposase for insertion sequence IS1661 47 49.14 0 57176..57934 - 252 145597371 - YPDSF_0048 - DNA-binding transcriptional repressor GlpR 48 50.30 0 57969..58805 - 278 145597372 - YPDSF_0049 - intramembrane serine protease GlpG 49 48.18 0 58823..59152 - 109 145597373 glpE YPDSF_0050 - thiosulfate sulfurtransferase 50 51.03 0 59527..62238 - 903 145597374 - YPDSF_0051 - transcriptional regulator MalT 51 49.46 0 62556..64961 + 801 145597375 - YPDSF_0052 - glycogen/starch/alpha-glucan phosphorylase 52 51.22 0 64974..67070 + 698 145597376 malQ YPDSF_0053 - 4-alpha-glucanotransferase 53 46.70 0 67399..67974 - 191 145597377 - YPDSF_0054 - putative DNA uptake protein 54 55.27 +1 68034..68735 - 233 145597378 - YPDSF_0055 - gluconate periplasmic binding protein 55 52.01 0 68801..69598 + 265 145597379 - YPDSF_0056 - biotin biosynthesis protein 56 44.07 0 69768..70037 + 89 145597380 - YPDSF_0057 - hypothetical protein 57 52.33 0 70175..70432 - 85 145597381 - YPDSF_0058 - hypothetical protein 58 51.08 0 70468..72783 - 771 145597382 feoB YPDSF_0059 - ferrous iron transport protein B 59 48.68 0 72875..73102 - 75 145597383 feoA YPDSF_0060 - ferrous iron transport protein A 60 54.17 +1 73626..76001 - 791 145597384 - YPDSF_0061 - hypothetical protein 61 49.22 0 76535..77050 + 171 145597385 greB YPDSF_0062 - transcription elongation factor GreB 62 52.22 0 77186..77905 + 239 145597386 ompR YPDSF_0063 - osmolarity response regulator 63 51.52 0 77902..79254 + 450 145597387 envZ YPDSF_0064 - osmolarity sensor protein 64 49.57 0 79409..81028 - 539 145597388 - YPDSF_0065 - phosphoenolpyruvate carboxykinase 65 49.21 0 81225..82106 - 293 145597389 hslO YPDSF_0066 - Hsp33-like chaperonin 66 52.21 0 82269..82676 - 135 145597390 - YPDSF_0067 - heat shock protein 15 67 48.02 0 82705..83385 - 226 145597391 - YPDSF_0068 - hypothetical protein 68 48.37 0 83529..85676 - 715 145597392 - YPDSF_0069 - membrane protein 69 47.44 0 86263..86808 + 181 145597393 nudE YPDSF_0070 - ADP-ribose diphosphatase NudE 70 51.76 0 86944..89499 - 851 145597394 mrcA YPDSF_0071 - peptidoglycan synthetase 71 52.06 0 89619..90515 + 298 145597395 - YPDSF_0072 - hypothetical protein 72 51.82 0 90515..91120 + 201 145597396 - YPDSF_0073 - hypothetical protein 73 49.44 0 91068..91694 + 208 145597397 - YPDSF_0074 - hypothetical protein 74 47.09 0 91660..92088 + 142 145597398 - YPDSF_0075 - membrane protein 75 41.79 -1 92091..92480 - 129 145597399 - YPDSF_0076 - hypothetical protein 76 48.12 0 92287..93639 + 450 145597400 - YPDSF_0077 - putative outer membrane porin HofQ 77 47.89 0 93988..94509 + 173 145597401 aroK YPDSF_0078 - shikimate kinase I 78 49.77 0 94566..95654 + 362 145597402 aroB YPDSF_0079 - 3-dehydroquinate synthase 79 48.59 0 95908..96897 + 329 145597403 - YPDSF_0080 - hypothetical protein 80 45.71 0 96981..97796 + 271 145597404 - YPDSF_0081 - DNA adenine methylase 81 49.71 0 98099..98776 + 225 145597405 - YPDSF_0082 - ribulose-phosphate 3-epimerase 82 51.79 0 98769..99467 + 232 162202303 - YPDSF_0083 - phosphoglycolate phosphatase 83 48.41 0 99469..100509 + 346 145597407 - YPDSF_0084 - tryptophanyl-tRNA synthetase 84 53.16 +1 100628..102049 - 473 145597408 cysG YPDSF_0085 - siroheme synthase 85 53.78 +1 102137..102943 - 268 145597409 - YPDSF_0086 - nitrite transporter NirC 86 51.38 0 103122..103448 - 108 145597410 nirD YPDSF_0087 - nitrite reductase small subunit 87 51.63 0 103445..105991 - 848 145597411 - YPDSF_0088 - nitrite reductase 88 51.66 0 106313..107611 + 432 145597412 - YPDSF_0089 - cytosine deaminase 89 47.76 0 107696..108880 - 394 145597413 - YPDSF_0090 - hypothetical protein 90 50.51 0 109366..111426 + 686 145597414 - YPDSF_0091 - membrane receptor protein 91 51.37 0 111539..112525 - 328 145597415 - YPDSF_0092 - LacI family transcriptional regulator 92 45.26 0 114596..115165 + 189 145597416 - YPDSF_0095 - peptidyl-prolyl cis-trans isomerase A (rotamase A) 93 51.95 0 115491..117032 + 513 145597417 - YPDSF_0096 - hypothetical protein 94 51.91 0 117275..117850 + 191 145597418 - YPDSF_0097 - para-aminobenzoate synthase component II 95 52.87 +1 117983..119200 + 405 145597419 argD YPDSF_0098 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 96 48.37 0 119426..121546 - 706 145597420 - YPDSF_0099 - hypothetical protein 97 46.76 0 121632..122264 - 210 145597421 - YPDSF_0100 - cAMP-regulatory protein 98 49.26 0 122600..123007 + 135 145597422 - YPDSF_0101 - hypothetical protein 99 33.80 -2 123079..123510 + 143 145597423 - YPDSF_0102 - hypothetical protein 100 49.54 0 123688..124557 - 289 145597424 - YPDSF_0103 - phosphoribulokinase 1 101 49.37 0 124706..124942 - 78 145597425 - YPDSF_0104 - hypothetical protein 102 51.27 0 124939..125919 - 326 145597426 - YPDSF_0105 - putative hydrolase 103 48.92 0 126021..126623 + 200 145597427 - YPDSF_0106 - ABC-transport protein 104 51.98 0 126826..127887 + 353 145597428 tauA YPDSF_0107 - taurine transporter substrate binding subunit 105 53.65 +1 127896..128663 + 255 145597429 tauB YPDSF_0108 - taurine transporter ATP-binding subunit 106 54.62 +1 128660..129514 + 284 145597430 - YPDSF_0109 - taurine transporter subunit 107 51.00 0 129511..130359 + 282 145597431 tauD YPDSF_0110 - taurine dioxygenase 108 49.39 0 131446..132435 - 329 145597432 - YPDSF_0113 - glycosyl transferase 109 51.27 0 132570..134492 - 640 145597433 - YPDSF_0114 - putative ABC transporter ATP-binding protein 110 49.18 0 134743..135291 + 182 145597434 - YPDSF_0115 - glutathione-regulated potassium-efflux system ancillary protein KefG 111 51.41 0 135295..137103 + 602 145597435 - YPDSF_0116 - glutathione-regulated potassium-efflux system protein KefB 112 45.95 0 137119..137340 + 73 145597436 - YPDSF_0117 - hypothetical protein 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.