IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
553	 49.26	0	645191..646333	-	380	145597876	-	YPDSF_0569	-	coproporphyrinogen III oxidase
554	 53.20	+1	646314..646907	-	197	145597877	-	YPDSF_0570	-	putative deoxyribonucleotide triphosphate pyrophosphatase
555	 50.52	0	647007..647297	-	96	145597878	-	YPDSF_0571	-	hypothetical protein
556	 46.31	0	647294..647848	-	184	145597879	-	YPDSF_0572	-	membrane protein
557	 50.97	0	648136..648957	-	273	145597880	-	YPDSF_0573	-	pyrroline-5-carboxylate reductase
558	 48.93	0	649090..649788	-	232	145597881	-	YPDSF_0574	-	hypothetical protein
559	 47.73	0	649808..650932	+	374	145597882	-	YPDSF_0575	-	hypothetical protein
560	 52.60	0	651041..652156	-	371	145597883	-	YPDSF_0576	-	agmatine deiminase
561	 50.40	0	652160..653044	-	294	145597884	-	YPDSF_0577	-	carbon-nitrogen hydrolase
562	 53.19	+1	653224..653646	-	140	145597885	-	YPDSF_0578	-	Holliday junction resolvase-like protein
563	 46.45	0	653646..654209	-	187	145597886	-	YPDSF_0579	-	hypothetical protein
564	 49.17	0	654325..655284	-	319	145597887	-	YPDSF_0580	-	glutathione synthetase
565	 50.00	0	655310..656041	-	243	145597888	-	YPDSF_0581	-	hypothetical protein
566	 43.45	0	656082..656249	+	55	145597889	-	YPDSF_0582	-	hypothetical protein
567	 47.88	0	656293..657000	-	235	145597890	-	YPDSF_0583	-	endonuclease I
568	 48.39	0	657098..657655	-	185	145597891	-	YPDSF_0584	-	hypothetical protein
569	 49.78	0	657803..658957	-	384	145597892	-	YPDSF_0585	-	S-adenosylmethionine synthetase
570	 50.10	0	660164..662143	+	659	145597893	-	YPDSF_0586	-	arginine decarboxylase
571	 47.35	0	662303..662623	+	106	145597894	-	YPDSF_0587	-	Rieske protein
572	 48.87	0	662913..663665	-	250	145597895	-	YPDSF_0588	-	lipoprotein
573	 52.08	0	664156..666150	+	664	145597896	-	YPDSF_0589	-	transketolase
574	 45.75	0	666458..666916	+	152	145597897	-	YPDSF_0590	-	transposase for the IS1541 insertion element
575	 49.46	0	667257..668273	+	338	145597898	-	YPDSF_0591	-	erythrose 4-phosphate dehydrogenase
576	 50.95	0	668376..669539	+	387	145597899	pgk	YPDSF_0592	-	phosphoglycerate kinase
577	 47.22	0	669659..670738	+	359	145597900	-	YPDSF_0593	-	fructose-bisphosphate aldolase
578	 50.11	0	671176..672045	+	289	145597901	-	YPDSF_0594	-	membrane protein
579	 50.81	0	672308..672925	+	205	145597902	-	YPDSF_0595	-	arginine exporter protein
580	 49.44	0	673094..673894	+	266	145597903	-	YPDSF_0596	-	hypothetical protein
581	 53.91	+1	673905..674813	-	302	145597904	-	YPDSF_0597	-	chromosome replication initiation inhibitor protein
582	 47.95	0	675155..675811	+	218	145597905	-	YPDSF_0598	-	ribose-5-phosphate isomerase A
583	 48.87	0	676118..677359	+	413	145597906	-	YPDSF_0599	-	D-3-phosphoglycerate dehydrogenase
584	 45.97	0	677748..678206	+	152	145597907	-	YPDSF_0600	-	transposase for the IS1541 insertion element
585	 51.76	0	678335..678931	-	198	145597908	-	YPDSF_0601	-	5-formyltetrahydrofolate cyclo-ligase-family protein
586	 42.12	-1	679295..679624	-	109	145597909	-	YPDSF_0602	-	Z-ring-associated protein
587	 46.98	0	679961..680539	+	192	145597910	-	YPDSF_0603	-	hypothetical protein
588	 51.45	0	680627..681940	+	437	145597911	-	YPDSF_0604	-	proline aminopeptidase P II
589	 55.05	+1	682026..683204	+	392	145597912	-	YPDSF_0605	-	2-octaprenyl-6-methoxyphenyl hydroxylase
590	 53.94	+1	683254..684597	+	447	145597913	-	YPDSF_0606	-	hypothetical protein
591	 50.55	0	685318..686415	+	365	145597914	gcvT	YPDSF_0607	-	glycine cleavage system aminomethyltransferase T
592	 49.35	0	686484..686870	+	128	145597915	-	YPDSF_0608	-	glycine cleavage system protein H
593	 51.46	0	687082..689961	+	959	145597916	-	YPDSF_0609	-	glycine dehydrogenase
594	 42.24	-1	690339..690776	+	145	145597917	-	YPDSF_0610	-	hypothetical protein
595	 30.16	-2	691147..691272	+	41	145597918	-	YPDSF_0611	-	hypothetical protein
596	 30.30	-2	691824..691988	+	54	145597919	-	YPDSF_0612	-	hypothetical protein
597	 43.21	-1	694065..695168	+	367	145597920	-	YPDSF_0614	-	hypothetical protein
598	 50.28	0	695370..696071	+	233	145597921	-	YPDSF_0615	-	hemolysin III
599	 45.18	0	696329..696826	+	165	145597922	-	YPDSF_0616	-	hypothetical protein
600	 51.96	0	696899..697891	-	330	145597923	-	YPDSF_0617	-	putative global regulator
601	 45.32	0	698208..698474	+	88	145597924	-	YPDSF_0618	-	hypothetical protein
602	 52.11	0	698455..698880	+	141	145597925	-	YPDSF_0619	-	hypothetical protein
603	 49.64	0	698880..699578	+	232	145597926	-	YPDSF_0620	-	DNA-binding response regulator CreB
604	 50.88	0	699603..701021	+	472	145597927	-	YPDSF_0621	-	sensory histidine kinase CreC
605	 45.77	0	701121..702599	+	492	145597928	-	YPDSF_0622	-	hypothetical protein
606	 45.53	0	702689..703270	-	193	145597929	-	YPDSF_0623	-	flavodoxin FldB
607	 50.22	0	703314..704213	+	299	145597930	xerD	YPDSF_0624	-	site-specific tyrosine recombinase XerD
608	 45.61	0	704244..704960	+	238	145597931	-	YPDSF_0625	-	thiol:disulfide interchange protein DsbC
609	 52.88	+1	704967..706700	+	577	145597932	-	YPDSF_0626	-	ssDNA exonuclease RecJ
610	 46.73	0	707045..707977	+	310	145597933	prfB	YPDSF_0627	-	peptide chain release factor 2
611	 47.96	0	707987..709504	+	505	145597934	lysS	YPDSF_0628	-	lysyl-tRNA synthetase
612	 48.56	0	709937..711151	+	404	145597935	-	YPDSF_0629	-	integrase
613	 46.77	0	711233..711418	-	61	145597936	-	YPDSF_0630	-	hypothetical protein
614	 57.14	+1	711519..711644	-	41	145597937	-	YPDSF_0631	-	hypothetical protein
615	 44.08	0	712339..712701	+	120	145597938	-	YPDSF_0632	-	DNA binding protein
616	 39.06	-1	712865..713161	+	98	145597939	-	YPDSF_0633	-	hypothetical protein
617	 45.61	0	713161..713559	+	132	145597940	-	YPDSF_0634	-	hypothetical protein
618	 55.15	+1	713959..716250	-	763	145597941	-	YPDSF_0635	-	primase
619	 43.12	-1	716550..716876	+	108	145597942	-	YPDSF_0636	-	hypothetical protein
620	 41.79	-1	717035..717235	-	66	145597943	-	YPDSF_0637	-	regulatory protein
621	 57.06	+1	717417..717749	-	110	145597944	-	YPDSF_0638	-	hypothetical protein
622	 32.49	-2	717755..717991	-	78	145597945	-	YPDSF_0639	-	hypothetical protein
623	 51.64	0	718004..718369	-	121	145597946	-	YPDSF_0640	-	hypothetical protein
624	 45.58	0	718638..719780	+	380	145597947	-	YPDSF_0641	-	hypothetical protein
625	 49.45	0	720287..721825	+	512	145597948	-	YPDSF_0642	-	hypothetical protein
626	 38.97	-1	721822..722016	+	64	145597949	-	YPDSF_0643	-	hypothetical protein
627	 46.04	0	723297..725492	+	731	145597950	-	YPDSF_0644	-	hypothetical protein
628	 51.17	0	725462..726229	+	255	145597951	-	YPDSF_0645	-	hypothetical protein
629	 35.13	-2	726834..727613	+	259	145597952	-	YPDSF_0646	-	hypothetical protein
630	 46.73	0	727830..728135	+	101	145597953	-	YPDSF_0647	-	hypothetical protein
631	 49.53	0	728234..728554	-	106	145597954	-	YPDSF_0648	-	hypothetical protein
632	 51.10	0	728554..729234	-	226	145597955	-	YPDSF_0649	-	hypothetical protein
633	 48.83	0	729658..730515	-	285	145597956	-	YPDSF_0650	-	hypothetical protein
634	 31.41	-2	730891..731409	-	172	145597957	-	YPDSF_0651	-	hypothetical protein
635	 47.50	0	732188..733189	-	333	145597958	-	YPDSF_0652	-	sugar-binding periplasmic protein
636	 48.56	0	733624..734628	-	334	145597959	-	YPDSF_0653	-	sugar transport system permease
637	 44.33	0	734700..736208	-	502	145597960	-	YPDSF_0654	-	sugar transport ATP-binding protein
638	 48.32	0	736747..737847	-	366	145597961	-	YPDSF_0655	-	sugar transport ATP-binding protein
639	 47.57	0	738204..739439	+	411	145597962	-	YPDSF_0656	-	sugar-binding protein
640	 51.06	0	739599..739739	+	46	145597963	-	YPDSF_0657	-	ABC maltodextrin transporter, permease subunit
641	 45.03	0	739712..740908	+	398	145597964	-	YPDSF_0658	-	maltodextrin transport permease
642	 43.54	0	740920..741771	+	283	145597965	-	YPDSF_0659	-	maltodextrin permease protein
643	 45.97	0	741776..742978	+	400	145597966	-	YPDSF_0660	-	galactosidase
644	 47.30	0	745896..747155	-	419	145597967	-	YPDSF_0664	-	maltoporin
645	 48.32	0	747427..748500	+	357	145597968	lacI	YPDSF_0665	-	lac repressor
646	 50.38	0	748813..751188	-	791	145597969	-	YPDSF_0666	-	glucosidase
647	 49.46	0	751339..752646	-	435	145597970	-	YPDSF_0667	-	sugar transporter
648	 48.11	0	753040..754122	+	360	145597971	-	YPDSF_0668	-	LacI-family regulatory protein
649	 49.74	0	754363..754941	-	192	145597972	-	YPDSF_0669	-	ThiJ/PfpI-family thiamine biogenesis protein
650	 50.18	0	754965..755819	-	284	145597973	gatY	YPDSF_0670	-	tagatose-bisphosphate aldolase
651	 49.60	0	755930..757417	-	495	145597974	-	YPDSF_0671	-	hypothetical protein
652	 48.63	0	757540..759147	-	535	145597975	-	YPDSF_0672	-	sulfatase
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.