IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
478	 51.49	0	551904..552674	-	256	145597801	fliP	YPDSF_0493	-	flagellar biosynthesis protein FliP
479	 44.44	0	552671..553084	-	137	145597802	-	YPDSF_0494	-	flagellar switch protein
480	 37.56	-2	553077..553976	-	299	145597803	-	YPDSF_0495	-	flagellar motor switch protein
481	 44.61	0	554491..555519	+	342	145597804	-	YPDSF_0496	-	sigma-54 transcriptional regulatory protein
482	 51.44	0	555536..555916	+	126	145597805	-	YPDSF_0497	-	flagellar hook-basal body complex protein
483	 50.21	0	555926..557566	+	546	145597806	fliF	YPDSF_0498	-	flagellar MS-ring protein
484	 50.29	0	557538..558581	+	347	145597807	fliG	YPDSF_0499	-	flagellar motor switch protein G
485	 53.84	+1	558586..559302	+	238	145597808	fliH	YPDSF_0500	-	flagellar assembly protein H
486	 57.94	+2	559295..560623	+	442	145597809	fliI	YPDSF_0501	-	flagellum-specific ATP synthase
487	 50.23	0	560627..561064	+	145	145597810	-	YPDSF_0502	-	hypothetical protein
488	 47.89	0	561392..561817	-	141	145597811	-	YPDSF_0503	-	hypothetical protein
489	 52.06	0	561824..562090	-	88	145597812	-	YPDSF_0504	-	flagellar regulatory protein
490	 48.80	0	562319..563236	-	305	145597813	flgA	YPDSF_0505	-	flagellar basal body P-ring biosynthesis protein FlgA
491	 45.83	0	563264..563671	+	135	145597814	flgB	YPDSF_0506	-	flagellar basal body rod protein FlgB
492	 52.82	0	563674..564099	+	141	145597815	flgC	YPDSF_0507	-	flagellar basal body rod protein FlgC
493	 51.29	0	564102..564758	+	218	145597816	flgD	YPDSF_0508	-	flagellar basal body rod modification protein
494	 50.97	0	564813..566054	+	413	145597817	flgE	YPDSF_0509	-	flagellar hook protein FlgE
495	 55.46	+1	566054..566785	+	243	145597818	flgF	YPDSF_0510	-	flagellar basal body rod protein FlgF
496	 52.29	0	566853..567638	+	261	145597819	flgG	YPDSF_0511	-	flagellar basal body rod protein FlgG
497	 53.00	+1	567673..568338	+	221	145597820	flgH	YPDSF_0512	-	flagellar basal body L-ring protein
498	 54.25	+1	568352..569527	+	391	145597821	flgI	YPDSF_0513	-	flagellar basal body P-ring protein
499	 50.34	0	569537..569830	+	97	145597822	flgJ	YPDSF_0514	-	peptidoglycan hydrolase
500	 45.15	0	569943..571304	+	453	145597823	flgK	YPDSF_0515	-	flagellar hook-associated protein FlgK
501	 40.26	-1	571333..572256	+	307	145597824	flgL	YPDSF_0516	-	flagellar hook-associated protein FlgL
502	 50.79	0	572268..573281	+	337	145597825	-	YPDSF_0517	-	hypothetical protein
503	 42.73	-1	573445..573891	-	148	145597826	-	YPDSF_0518	-	hypothetical protein
504	 45.27	0	573872..574918	-	348	145597827	-	YPDSF_0519	-	regulatory protein
505	 49.75	0	575544..576749	+	401	145597828	-	YPDSF_0520	-	flagellin
506	 48.37	0	577308..578504	+	398	145597829	-	YPDSF_0521	-	flagellin
507	 46.44	0	579165..579950	+	261	145597830	-	YPDSF_0522	-	transposase for insertion sequence IS1661
508	 44.35	0	580198..581622	+	474	145597831	-	YPDSF_0523	-	Sodium:galactoside symporter
509	 50.30	0	581881..584061	-	726	145597832	-	YPDSF_0524	-	ferric siderophore receptor
510	 53.65	+1	584133..585461	-	442	145597833	-	YPDSF_0525	-	siderophore biosynthesis protein IucD
511	 53.92	+1	585458..587206	-	582	145597834	-	YPDSF_0526	-	siderophore biosynthesis protein IucC
512	 55.42	+1	587203..588153	-	316	145597835	-	YPDSF_0527	-	siderophore biosynthesis protein IucB
513	 54.62	+1	588137..589207	-	356	145597836	-	YPDSF_0528	-	siderophore biosynthesis protein, IucA familly
514	 50.41	0	589300..589908	-	202	145597837	-	YPDSF_0529	-	hypothetical protein
515	 55.15	+1	590048..591271	+	407	145597838	-	YPDSF_0530	-	hypothetical protein
516	 38.37	-2	591561..592394	-	277	145597839	-	YPDSF_0531	-	hypothetical protein
517	 49.37	0	592771..594129	-	452	145597840	-	YPDSF_0532	-	hypothetical protein
518	 38.44	-2	594691..595434	+	247	145597841	-	YPDSF_0533	-	quorum-sensing transcriptional regulator
519	 41.17	-1	595415..596065	-	216	145597842	-	YPDSF_0534	-	N-acylhomoserine lactone synthase YspI
520	 49.29	0	597610..597891	+	93	145597843	-	YPDSF_0535	-	membrane protein
521	 38.13	-2	598342..598737	+	131	145597844	-	YPDSF_0536	-	putative lipoprotein
522	 47.73	0	598805..599068	+	87	145597845	-	YPDSF_0537	-	insertion element protein
523	 51.70	0	601013..601513	+	166	145597846	-	YPDSF_0538	-	hypothetical protein
524	 55.28	+1	601562..603106	+	514	145597847	-	YPDSF_0539	-	hypothetical protein
525	 59.79	+2	603118..604470	+	450	145597848	-	YPDSF_0540	-	hypothetical protein
526	 61.28	+2	604467..605153	+	228	145597849	-	YPDSF_0541	-	membrane protein
527	 62.64	+2	605153..606889	+	578	145597850	-	YPDSF_0542	-	OmpA-family membrane protein
528	 49.38	0	606866..607351	-	161	145597851	-	YPDSF_0543	-	hypothetical protein
529	 50.41	0	606893..607384	+	163	145597852	-	YPDSF_0544	-	hypothetical protein
530	 58.51	+2	607802..610450	+	882	145597853	-	YPDSF_0545	-	Clp ATPase
531	 56.70	+1	610447..612795	+	782	145597854	-	YPDSF_0546	-	Rhs element Vgr protein
532	 43.73	0	612811..615108	+	765	145597855	-	YPDSF_0547	-	kinase
533	 33.46	-2	615095..615862	+	255	145597856	-	YPDSF_0548	-	hypothetical protein
534	 51.45	0	615958..616233	+	91	145597857	-	YPDSF_0549	-	insertion sequence protein
535	 46.34	0	616287..616655	+	122	145597858	-	YPDSF_0550	-	insertion sequence protein
536	 51.10	0	617263..617898	+	211	145597859	-	YPDSF_0551	-	hypothetical protein
537	 49.67	0	619055..619207	+	50	145597860	-	YPDSF_0553	-	hypothetical protein
538	 45.58	0	619062..621389	+	775	145597861	-	YPDSF_0554	-	ornithine decarboxylase
539	 47.08	0	621945..622904	+	319	145597862	-	YPDSF_0555	-	sugar ABC transporter periplasmic binding protein
540	 48.67	0	622950..624449	+	499	145597863	-	YPDSF_0556	-	sugar transport ATP-binding protein
541	 47.36	0	624482..625465	+	327	145597864	-	YPDSF_0557	-	sugar transport system permease protein
542	 53.05	+1	625548..627692	-	714	145597865	-	YPDSF_0558	-	hydroxamate-type ferrisiderophore receptor
543	 54.31	+1	627685..628785	-	366	145597866	-	YPDSF_0559	-	hypothetical protein
544	 46.19	0	629084..630172	-	362	145597867	mltC	YPDSF_0560	-	murein transglycosylase C
545	 41.39	-1	630343..630615	-	90	145597868	-	YPDSF_0561	-	hypothetical protein
546	 50.40	0	630793..631911	-	372	145597869	-	YPDSF_0562	-	adenine DNA glycosylase
547	 51.67	0	632246..632965	+	239	145597870	trmB	YPDSF_0563	-	tRNA (guanine-N(7))-methyltransferase
548	 42.81	-1	632965..633291	+	108	145597871	-	YPDSF_0564	-	hypothetical protein
549	 48.76	0	633402..634328	+	308	145597872	-	YPDSF_0565	-	glutaminase
550	 49.15	0	634440..634970	+	176	145597873	-	YPDSF_0566	-	hypothetical protein
551	 51.22	0	634928..635173	+	81	145597874	-	YPDSF_0567	-	hypothetical protein
552	 37.22	-2	635669..645001	+	3110	145597875	-	YPDSF_0568	-	virulence determinant
553	 49.26	0	645191..646333	-	380	145597876	-	YPDSF_0569	-	coproporphyrinogen III oxidase
554	 53.20	+1	646314..646907	-	197	145597877	-	YPDSF_0570	-	putative deoxyribonucleotide triphosphate pyrophosphatase
555	 50.52	0	647007..647297	-	96	145597878	-	YPDSF_0571	-	hypothetical protein
556	 46.31	0	647294..647848	-	184	145597879	-	YPDSF_0572	-	membrane protein
557	 50.97	0	648136..648957	-	273	145597880	-	YPDSF_0573	-	pyrroline-5-carboxylate reductase
558	 48.93	0	649090..649788	-	232	145597881	-	YPDSF_0574	-	hypothetical protein
559	 47.73	0	649808..650932	+	374	145597882	-	YPDSF_0575	-	hypothetical protein
560	 52.60	0	651041..652156	-	371	145597883	-	YPDSF_0576	-	agmatine deiminase
561	 50.40	0	652160..653044	-	294	145597884	-	YPDSF_0577	-	carbon-nitrogen hydrolase
562	 53.19	+1	653224..653646	-	140	145597885	-	YPDSF_0578	-	Holliday junction resolvase-like protein
563	 46.45	0	653646..654209	-	187	145597886	-	YPDSF_0579	-	hypothetical protein
564	 49.17	0	654325..655284	-	319	145597887	-	YPDSF_0580	-	glutathione synthetase
565	 50.00	0	655310..656041	-	243	145597888	-	YPDSF_0581	-	hypothetical protein
566	 43.45	0	656082..656249	+	55	145597889	-	YPDSF_0582	-	hypothetical protein
567	 47.88	0	656293..657000	-	235	145597890	-	YPDSF_0583	-	endonuclease I
568	 48.39	0	657098..657655	-	185	145597891	-	YPDSF_0584	-	hypothetical protein
569	 49.78	0	657803..658957	-	384	145597892	-	YPDSF_0585	-	S-adenosylmethionine synthetase
570	 50.10	0	660164..662143	+	659	145597893	-	YPDSF_0586	-	arginine decarboxylase
571	 47.35	0	662303..662623	+	106	145597894	-	YPDSF_0587	-	Rieske protein
572	 48.87	0	662913..663665	-	250	145597895	-	YPDSF_0588	-	lipoprotein
573	 52.08	0	664156..666150	+	664	145597896	-	YPDSF_0589	-	transketolase
574	 45.75	0	666458..666916	+	152	145597897	-	YPDSF_0590	-	transposase for the IS1541 insertion element
575	 49.46	0	667257..668273	+	338	145597898	-	YPDSF_0591	-	erythrose 4-phosphate dehydrogenase
576	 50.95	0	668376..669539	+	387	145597899	pgk	YPDSF_0592	-	phosphoglycerate kinase
577	 47.22	0	669659..670738	+	359	145597900	-	YPDSF_0593	-	fructose-bisphosphate aldolase
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.