IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
431	 53.42	+1	503136..503822	-	228	145597754	-	YPDSF_0444	-	hypothetical protein
432	 47.21	0	504123..505520	-	465	145597755	tolC	YPDSF_0445	-	outer membrane channel protein
433	 49.61	0	505916..506548	+	210	145597756	nudF	YPDSF_0446	-	ADP-ribose pyrophosphatase NudF
434	 46.48	0	506582..507007	+	141	145597757	-	YPDSF_0447	-	hypothetical protein
435	 50.00	0	507016..507915	+	299	145597758	-	YPDSF_0448	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
436	 46.39	0	507915..508496	+	193	145597759	-	YPDSF_0449	-	esterase YqiA
437	 50.95	0	508598..510493	+	631	145597760	-	YPDSF_0450	-	DNA topoisomerase IV subunit B
438	 53.07	+1	510497..511408	+	303	145597761	-	YPDSF_0451	-	LysR family regulatory protein
439	 46.84	0	511466..512050	-	194	145597762	-	YPDSF_0452	-	modulator of drug activity
440	 42.97	-1	512123..512371	-	82	145597763	-	YPDSF_0453	-	hypothetical protein
441	 51.23	0	512354..514627	+	757	145597764	-	YPDSF_0454	-	DNA topoisomerase IV subunit A
442	 47.54	0	514916..515647	+	243	145597765	-	YPDSF_0455	-	acyltransferase
443	 44.44	0	515637..515816	-	59	145597766	-	YPDSF_0456	-	hypothetical protein
444	 52.42	0	515826..517250	+	474	145597767	-	YPDSF_0457	-	repressor protein for FtsI
445	 51.74	0	517558..519105	+	515	145597768	-	YPDSF_0458	-	hypothetical protein
446	 51.91	0	519090..519902	+	270	145597769	-	YPDSF_0459	-	hypothetical protein
447	 48.92	0	519924..520757	-	277	145597770	dkgA	YPDSF_0460	-	2,5-diketo-D-gluconate reductase A
448	 45.71	0	520904..521113	+	69	145597771	-	YPDSF_0461	-	hypothetical protein
449	 51.38	0	521176..522333	-	385	145597772	-	YPDSF_0462	-	iron-containing alcohol dehydrogenase
450	 48.55	0	522731..523624	+	297	145597773	-	YPDSF_0463	-	AraC family transcription regulator
451	 48.72	0	523716..524378	-	220	145597774	-	YPDSF_0464	-	DedA family membrane protein
452	 48.43	0	524571..525782	-	403	145597775	-	YPDSF_0465	-	cystathionine beta-lyase
453	 52.02	0	526261..527298	+	345	145597776	-	YPDSF_0466	-	MotA/TolQ/ExbB proton channel family protein
454	 48.36	0	527308..527733	+	141	145597777	-	YPDSF_0467	-	biopolymer transport protein ExbD
455	 35.47	-2	527830..529371	-	513	145597778	-	YPDSF_0468	-	hypothetical protein
456	 46.07	0	529410..529982	-	190	145597779	-	YPDSF_0469	-	hypothetical protein
457	 37.55	-2	529966..530439	-	157	145597780	-	YPDSF_0470	-	hypothetical protein
458	 35.67	-2	530436..531206	-	256	145597781	-	YPDSF_0471	-	hypothetical protein
459	 30.22	-2	531190..532023	-	277	145597782	-	YPDSF_0472	-	hypothetical protein
460	 33.22	-2	532020..532895	-	291	145597783	-	YPDSF_0473	-	hypothetical protein
461	 42.58	-1	532892..534178	-	428	145597784	-	YPDSF_0474	-	type II secretion protein
462	 33.69	-2	534190..535317	-	375	145597785	-	YPDSF_0475	-	hypothetical protein
463	 43.56	0	535615..536064	-	149	145597786	-	YPDSF_0476	-	outer membrane secretin family protein
464	 35.79	-2	536079..536933	-	284	145597787	-	YPDSF_0477	-	hypothetical protein
465	 35.52	-2	536930..537796	-	288	145597788	-	YPDSF_0478	-	hypothetical protein
466	 38.53	-1	537848..538270	-	140	145597789	-	YPDSF_0479	-	hypothetical protein
467	 45.75	0	538470..538928	+	152	145597790	-	YPDSF_0480	-	transposase for the IS1541 insertion element
468	 50.34	0	539281..541761	+	826	145597791	-	YPDSF_0481	-	outer membrane usher protein
469	 48.89	0	541779..542498	+	239	145597792	-	YPDSF_0482	-	fimbrial chaperone protein
470	 46.39	0	543840..544919	-	359	145597793	-	YPDSF_0485	-	iron-enterobactin transporter periplasmic binding protein
471	 42.77	-1	545775..546770	+	331	145597794	-	YPDSF_0486	-	hypothetical protein
472	 47.67	0	546862..547440	-	192	145597795	-	YPDSF_0487	-	lipoprotein
473	 37.40	-2	547443..547565	+	40	145597796	-	YPDSF_0488	-	hypothetical protein
474	 44.92	0	547634..549730	-	698	145597797	flhA	YPDSF_0489	-	flagellar biosynthesis protein FlhA
475	 44.62	0	549717..550850	-	377	145597798	flhB	YPDSF_0490	-	flagellar biosynthesis protein FlhB
476	 47.42	0	550850..551623	-	257	145597799	-	YPDSF_0491	-	flagellar assembly protein
477	 45.05	0	551630..551902	-	90	145597800	-	YPDSF_0492	-	flagellar assembly protein
478	 51.49	0	551904..552674	-	256	145597801	fliP	YPDSF_0493	-	flagellar biosynthesis protein FliP
479	 44.44	0	552671..553084	-	137	145597802	-	YPDSF_0494	-	flagellar switch protein
480	 37.56	-2	553077..553976	-	299	145597803	-	YPDSF_0495	-	flagellar motor switch protein
481	 44.61	0	554491..555519	+	342	145597804	-	YPDSF_0496	-	sigma-54 transcriptional regulatory protein
482	 51.44	0	555536..555916	+	126	145597805	-	YPDSF_0497	-	flagellar hook-basal body complex protein
483	 50.21	0	555926..557566	+	546	145597806	fliF	YPDSF_0498	-	flagellar MS-ring protein
484	 50.29	0	557538..558581	+	347	145597807	fliG	YPDSF_0499	-	flagellar motor switch protein G
485	 53.84	+1	558586..559302	+	238	145597808	fliH	YPDSF_0500	-	flagellar assembly protein H
486	 57.94	+2	559295..560623	+	442	145597809	fliI	YPDSF_0501	-	flagellum-specific ATP synthase
487	 50.23	0	560627..561064	+	145	145597810	-	YPDSF_0502	-	hypothetical protein
488	 47.89	0	561392..561817	-	141	145597811	-	YPDSF_0503	-	hypothetical protein
489	 52.06	0	561824..562090	-	88	145597812	-	YPDSF_0504	-	flagellar regulatory protein
490	 48.80	0	562319..563236	-	305	145597813	flgA	YPDSF_0505	-	flagellar basal body P-ring biosynthesis protein FlgA
491	 45.83	0	563264..563671	+	135	145597814	flgB	YPDSF_0506	-	flagellar basal body rod protein FlgB
492	 52.82	0	563674..564099	+	141	145597815	flgC	YPDSF_0507	-	flagellar basal body rod protein FlgC
493	 51.29	0	564102..564758	+	218	145597816	flgD	YPDSF_0508	-	flagellar basal body rod modification protein
494	 50.97	0	564813..566054	+	413	145597817	flgE	YPDSF_0509	-	flagellar hook protein FlgE
495	 55.46	+1	566054..566785	+	243	145597818	flgF	YPDSF_0510	-	flagellar basal body rod protein FlgF
496	 52.29	0	566853..567638	+	261	145597819	flgG	YPDSF_0511	-	flagellar basal body rod protein FlgG
497	 53.00	+1	567673..568338	+	221	145597820	flgH	YPDSF_0512	-	flagellar basal body L-ring protein
498	 54.25	+1	568352..569527	+	391	145597821	flgI	YPDSF_0513	-	flagellar basal body P-ring protein
499	 50.34	0	569537..569830	+	97	145597822	flgJ	YPDSF_0514	-	peptidoglycan hydrolase
500	 45.15	0	569943..571304	+	453	145597823	flgK	YPDSF_0515	-	flagellar hook-associated protein FlgK
501	 40.26	-1	571333..572256	+	307	145597824	flgL	YPDSF_0516	-	flagellar hook-associated protein FlgL
502	 50.79	0	572268..573281	+	337	145597825	-	YPDSF_0517	-	hypothetical protein
503	 42.73	-1	573445..573891	-	148	145597826	-	YPDSF_0518	-	hypothetical protein
504	 45.27	0	573872..574918	-	348	145597827	-	YPDSF_0519	-	regulatory protein
505	 49.75	0	575544..576749	+	401	145597828	-	YPDSF_0520	-	flagellin
506	 48.37	0	577308..578504	+	398	145597829	-	YPDSF_0521	-	flagellin
507	 46.44	0	579165..579950	+	261	145597830	-	YPDSF_0522	-	transposase for insertion sequence IS1661
508	 44.35	0	580198..581622	+	474	145597831	-	YPDSF_0523	-	Sodium:galactoside symporter
509	 50.30	0	581881..584061	-	726	145597832	-	YPDSF_0524	-	ferric siderophore receptor
510	 53.65	+1	584133..585461	-	442	145597833	-	YPDSF_0525	-	siderophore biosynthesis protein IucD
511	 53.92	+1	585458..587206	-	582	145597834	-	YPDSF_0526	-	siderophore biosynthesis protein IucC
512	 55.42	+1	587203..588153	-	316	145597835	-	YPDSF_0527	-	siderophore biosynthesis protein IucB
513	 54.62	+1	588137..589207	-	356	145597836	-	YPDSF_0528	-	siderophore biosynthesis protein, IucA familly
514	 50.41	0	589300..589908	-	202	145597837	-	YPDSF_0529	-	hypothetical protein
515	 55.15	+1	590048..591271	+	407	145597838	-	YPDSF_0530	-	hypothetical protein
516	 38.37	-2	591561..592394	-	277	145597839	-	YPDSF_0531	-	hypothetical protein
517	 49.37	0	592771..594129	-	452	145597840	-	YPDSF_0532	-	hypothetical protein
518	 38.44	-2	594691..595434	+	247	145597841	-	YPDSF_0533	-	quorum-sensing transcriptional regulator
519	 41.17	-1	595415..596065	-	216	145597842	-	YPDSF_0534	-	N-acylhomoserine lactone synthase YspI
520	 49.29	0	597610..597891	+	93	145597843	-	YPDSF_0535	-	membrane protein
521	 38.13	-2	598342..598737	+	131	145597844	-	YPDSF_0536	-	putative lipoprotein
522	 47.73	0	598805..599068	+	87	145597845	-	YPDSF_0537	-	insertion element protein
523	 51.70	0	601013..601513	+	166	145597846	-	YPDSF_0538	-	hypothetical protein
524	 55.28	+1	601562..603106	+	514	145597847	-	YPDSF_0539	-	hypothetical protein
525	 59.79	+2	603118..604470	+	450	145597848	-	YPDSF_0540	-	hypothetical protein
526	 61.28	+2	604467..605153	+	228	145597849	-	YPDSF_0541	-	membrane protein
527	 62.64	+2	605153..606889	+	578	145597850	-	YPDSF_0542	-	OmpA-family membrane protein
528	 49.38	0	606866..607351	-	161	145597851	-	YPDSF_0543	-	hypothetical protein
529	 50.41	0	606893..607384	+	163	145597852	-	YPDSF_0544	-	hypothetical protein
530	 58.51	+2	607802..610450	+	882	145597853	-	YPDSF_0545	-	Clp ATPase
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.