IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3751	 52.02	0	4401927..4402991	-	354	145601074	-	YPDSF_3834	-	bifunctional regulatory protein/DNA repair protein
3752	 49.08	0	4403180..4403668	+	162	145601075	-	YPDSF_3835	-	methyltransferase
3753	 49.76	0	4403791..4404612	-	273	145601076	cysE	YPDSF_3836	-	serine acetyltransferase
3754	 51.57	0	4404878..4405897	-	339	145601077	gpsA	YPDSF_3837	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
3755	 48.43	0	4405897..4406373	-	158	145601078	-	YPDSF_3838	-	preprotein translocase subunit SecB
3756	 51.41	0	4406461..4406709	-	82	145601079	-	YPDSF_3839	-	glutaredoxin 3
3757	 45.06	0	4406828..4407262	-	144	145601080	-	YPDSF_3840	-	hypothetical protein
3758	 50.13	0	4407659..4409206	+	515	145601081	-	YPDSF_3841	-	phosphoglyceromutase
3759	 50.04	0	4409216..4410586	+	456	145601082	-	YPDSF_3842	-	hypothetical protein
3760	 50.46	0	4410610..4411047	+	145	145601083	-	YPDSF_3843	-	hypothetical protein
3761	 47.50	0	4411044..4411544	+	166	145601084	-	YPDSF_3844	-	hypothetical protein
3762	 48.15	0	4411682..4412707	-	341	145601085	tdh	YPDSF_3845	-	L-threonine 3-dehydrogenase
3763	 50.08	0	4412717..4413928	-	403	145601086	-	YPDSF_3846	-	2-amino-3-ketobutyrate coenzyme A ligase
3764	 45.12	0	4414174..4415106	+	310	145601087	rfaD	YPDSF_3847	-	ADP-L-glycero-D-mannoheptose-6-epimerase
3765	 51.74	0	4415137..4416201	+	354	145601088	-	YPDSF_3848	-	ADP-heptose:LPS heptosyltransferase II
3766	 50.72	0	4416201..4417166	+	321	145601089	-	YPDSF_3849	-	ADP-heptose:LPS heptosyl transferase I
3767	 49.71	0	4417478..4418863	+	461	145601090	-	YPDSF_3850	-	3-deoxy-D-manno-octulosonic-acid transferase
3768	 46.62	0	4418864..4419646	+	260	145601091	-	YPDSF_3851	-	lipopolysaccharide core biosynthesis glycosyl transferase
3769	 46.25	0	4419643..4420122	+	159	145601092	coaD	YPDSF_3852	-	phosphopantetheine adenylyltransferase
3770	 48.51	0	4420091..4420927	-	278	145601093	-	YPDSF_3853	-	formamidopyrimidine-DNA glycosylase
3771	 39.29	-1	4421010..4421177	-	55	145601094	rpmG	YPDSF_3854	-	50S ribosomal protein L33
3772	 50.63	0	4421189..4421425	-	78	145601095	rpmB	YPDSF_3855	-	50S ribosomal protein L28
3773	 45.44	0	4421688..4422356	-	222	145601096	radC	YPDSF_3856	-	DNA repair protein RadC
3774	 47.67	0	4422436..4423767	+	443	145601097	-	YPDSF_3857	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
3775	 49.02	0	4423745..4424203	+	152	145601098	dut	YPDSF_3858	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3776	 47.91	0	4424325..4424921	+	198	145601099	slmA	YPDSF_3859	-	nucleoid occlusion protein
3777	 50.77	0	4425056..4425703	-	215	145601100	pyrE	YPDSF_3860	-	orotate phosphoribosyltransferase
3778	 51.32	0	4425870..4426586	-	238	145601101	rph	YPDSF_3861	-	ribonuclease PH
3779	 48.50	0	4426713..4427576	+	287	145601102	-	YPDSF_3862	-	hypothetical protein
3780	 47.28	0	4427979..4428602	+	207	145601103	-	YPDSF_3863	-	membrane protein
3781	 48.12	0	4428615..4430318	-	567	145601104	ligB	YPDSF_3864	-	NAD-dependent DNA ligase LigB
3782	 46.47	0	4430719..4431342	+	207	145601105	gmk	YPDSF_3865	-	guanylate kinase
3783	 51.31	0	4431397..4431663	+	88	145601106	-	YPDSF_3866	-	DNA-directed RNA polymerase, omega chain
3784	 48.93	0	4431683..4433791	+	702	145601107	-	YPDSF_3867	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
3785	 49.64	0	4433797..4434489	+	230	145601108	-	YPDSF_3868	-	tRNA guanosine-2'-O-methyltransferase
3786	 51.63	0	4434490..4436571	+	693	145601109	-	YPDSF_3869	-	ATP-dependent DNA helicase RecG
3787	 50.04	0	4436937..4438151	-	404	145601110	-	YPDSF_3870	-	sodium/glutamate symport carrier protein
3788	 50.67	0	4438356..4439774	+	472	145601111	-	YPDSF_3871	-	membrane permease
3789	 48.30	0	4439922..4441631	+	569	145601112	-	YPDSF_3872	-	exported protein
3790	 50.97	0	4441766..4442689	-	307	145601113	-	YPDSF_3873	-	hypothetical protein
3791	 52.79	0	4442959..4443981	+	340	145601114	-	YPDSF_3874	-	transposase
3792	 50.38	0	4443981..4444760	+	259	145601115	-	YPDSF_3875	-	transposase/IS protein
3793	 48.86	0	4444834..4445271	-	145	145601116	-	YPDSF_3876	-	D-tyrosyl-tRNA deacylase
3794	 48.36	0	4445278..4446222	-	314	145601117	rbn	YPDSF_3877	-	ribonuclease BN
3795	 44.16	0	4446259..4446849	-	196	145601118	-	YPDSF_3878	-	phosphatase
3796	 49.01	0	4447171..4448994	-	607	145601119	-	YPDSF_3879	-	GTPase
3797	 50.78	0	4449556..4450965	+	469	145601120	glnA	YPDSF_3880	-	glutamine synthetase
3798	 49.26	0	4451188..4452267	+	359	145601121	glnL	YPDSF_3881	-	nitrogen regulation protein NR(II)
3799	 52.65	0	4452275..4453687	+	470	145601122	glnG	YPDSF_3882	-	nitrogen regulation protein NR(I)
3800	 47.74	0	4453741..4455114	-	457	145601123	-	YPDSF_3883	-	coproporphyrinogen III oxidase
3801	 48.50	0	4455297..4455863	-	188	145601124	-	YPDSF_3884	-	hypothetical protein
3802	 46.54	0	4456608..4457258	+	216	145601125	-	YPDSF_3885	-	GTPase EngB
3803	 47.48	0	4457666..4460464	-	932	145601126	-	YPDSF_3886	-	DNA polymerase I
3804	 42.15	-1	4460956..4461579	-	207	145601127	-	YPDSF_3887	-	periplasmic protein disulfide isomerase I
3805	 46.50	0	4461607..4462593	-	328	145601128	-	YPDSF_3888	-	serine/threonine protein kinase
3806	 41.11	-1	4462684..4462953	-	89	145601129	-	YPDSF_3889	-	hypothetical protein
3807	 43.54	0	4463107..4463694	+	195	145601130	mobA	YPDSF_3890	-	molybdopterin-guanine dinucleotide biosynthesis protein A
3808	 40.68	-1	4463694..4464224	+	176	145601131	-	YPDSF_3891	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3809	 49.55	0	4464282..4465490	-	402	145601132	-	YPDSF_3892	-	transposase for the IS285 insertion element
3810	 44.06	0	4471691..4472380	+	229	145601133	-	YPDSF_3893	-	GntR-famly transcriptional regulator
3811	 46.46	0	4472460..4473884	+	474	145601134	-	YPDSF_3894	-	membrane transport protein
3812	 49.71	0	4473881..4474051	-	56	145601135	-	YPDSF_3895	-	hypothetical protein
3813	 48.10	0	4475081..4475500	-	139	145601136	-	YPDSF_3898	-	D-ribose pyranase
3814	 45.75	0	4475705..4477573	-	622	145601137	trkD	YPDSF_3899	-	potassium transport protein Kup
3815	 46.91	0	4477847..4479385	+	512	145601138	-	YPDSF_3900	-	regulatory ATPase RavA
3816	 47.72	0	4479389..4480855	+	488	145601139	yieM	YPDSF_3901	-	hypothetical protein
3817	 45.52	0	4480954..4481946	-	330	145601140	-	YPDSF_3902	-	asparagine synthetase AsnA
3818	 41.56	-1	4482116..4482577	+	153	145601141	-	YPDSF_3903	-	DNA-binding transcriptional regulator AsnC
3819	 42.86	-1	4482670..4483110	+	146	145601142	-	YPDSF_3904	-	flavodoxin
3820	 47.88	0	4483491..4485380	+	629	145601143	-	YPDSF_3905	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3821	 45.73	0	4485526..4486146	+	206	145601144	gidB	YPDSF_3906	-	glucose-inhibited division protein B
3822	 46.61	0	4486813..4487196	+	127	145601145	-	YPDSF_3907	-	F0F1 ATP synthase subunit I
3823	 46.06	0	4487236..4488060	+	274	145601146	-	YPDSF_3908	-	F0F1 ATP synthase subunit A
3824	 52.08	0	4488110..4488349	+	79	145601147	-	YPDSF_3909	-	F0F1 ATP synthase subunit C
3825	 49.26	0	4488411..4488881	+	156	145601148	-	YPDSF_3910	-	F0F1 ATP synthase subunit B
3826	 49.44	0	4488896..4489429	+	177	145601149	-	YPDSF_3911	-	F0F1 ATP synthase subunit delta
3827	 49.94	0	4489444..4490985	+	513	145601150	-	YPDSF_3912	-	F0F1 ATP synthase subunit alpha
3828	 50.93	0	4491047..4491910	+	287	145601151	-	YPDSF_3913	-	F0F1 ATP synthase subunit gamma
3829	 49.82	0	4492066..4493448	+	460	145601152	-	YPDSF_3914	-	F0F1 ATP synthase subunit beta
3830	 49.52	0	4493479..4493892	+	137	145601153	atpC	YPDSF_3915	-	F0F1 ATP synthase subunit epsilon
3831	 47.48	0	4494513..4495883	+	456	145601154	glmU	YPDSF_3916	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
3832	 47.21	0	4496084..4497913	+	609	145601155	-	YPDSF_3917	-	D-fructose-6-phosphate amidotransferase
3833	 46.01	0	4498396..4499436	+	346	145601156	-	YPDSF_3918	-	phosphate transporter subunit
3834	 46.50	0	4499650..4500621	+	323	145601157	pstC	YPDSF_3919	-	phosphate transporter permease subunit
3835	 48.65	0	4500623..4501510	+	295	145601158	pstA	YPDSF_3920	-	phosphate transporter permease subunit
3836	 45.95	0	4501591..4502367	+	258	145601159	-	YPDSF_3921	-	phosphate transporter subunit
3837	 43.71	0	4502455..4503177	+	240	145601160	-	YPDSF_3922	-	transcriptional regulator PhoU
3838	 41.67	-1	4503473..4504144	+	223	145601161	-	YPDSF_3923	-	hypothetical protein
3839	 45.50	0	4504364..4505218	+	284	145601162	-	YPDSF_3924	-	periplasmic solute-binding protein
3840	 49.46	0	4505401..4506138	+	245	145601163	-	YPDSF_3925	-	ABC transporter permease
3841	 49.60	0	4506140..4506895	+	251	145601164	-	YPDSF_3926	-	amino acid transport system permease
3842	 47.68	0	4506930..4507598	-	222	145601165	-	YPDSF_3927	-	6-phosphogluconate phosphatase
3843	 50.14	0	4508034..4509419	+	461	145601166	-	YPDSF_3928	-	xanthine/uracil permease family protein
3844	 35.10	-2	4509964..4510584	+	206	145601167	-	YPDSF_3929	-	hypothetical protein
3845	 48.83	0	4511395..4512594	-	399	145601168	-	YPDSF_3930	-	trans-2-enoyl-CoA reductase
3846	 51.21	0	4512780..4514144	-	454	145601169	trmE	YPDSF_3931	-	tRNA modification GTPase TrmE
3847	 48.14	0	4514287..4515927	-	546	145601170	-	YPDSF_3932	-	putative inner membrane protein translocase component YidC
3848	 53.88	+1	4515930..4516187	-	85	145601171	-	YPDSF_3933	-	hypothetical protein
3849	 50.83	0	4516151..4516510	-	119	145601172	rnpA	YPDSF_3934	-	ribonuclease P
3850	 51.06	0	4516529..4516669	-	46	145601173	rpmH	YPDSF_3935	-	50S ribosomal protein L34
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.