IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3715	 49.07	0	4364914..4365129	-	71	145601038	rpmE	YPDSF_3796	-	50S ribosomal protein L31
3716	 52.89	+1	4365382..4367580	+	732	145601039	-	YPDSF_3797	-	primosome assembly protein PriA
3717	 48.66	0	4367957..4368961	+	334	145601040	-	YPDSF_3798	-	DNA-binding transcriptional regulator CytR
3718	 53.07	+1	4369027..4369872	+	281	145601041	-	YPDSF_3799	-	cell division protein FtsN
3719	 48.76	0	4369972..4370496	+	174	145601042	-	YPDSF_3800	-	ATP-dependent protease peptidase subunit
3720	 48.80	0	4370567..4371898	+	443	145601043	hslU	YPDSF_3801	-	ATP-dependent protease ATP-binding subunit
3721	 48.82	0	4372122..4373051	+	309	145601044	-	YPDSF_3802	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3722	 47.53	0	4373193..4373678	+	161	145601045	-	YPDSF_3803	-	ribonuclease activity regulator protein RraA
3723	 53.16	+1	4373795..4374379	-	194	145601046	-	YPDSF_3804	-	hypothetical protein
3724	 29.33	-2	4374685..4374834	-	49	145601047	-	YPDSF_3805	-	hypothetical protein
3725	 45.83	0	4375009..4375248	-	79	145601048	-	YPDSF_3806	-	hypothetical protein
3726	 39.13	-1	4375461..4376753	+	430	145601049	-	YPDSF_3807	-	hypothetical protein
3727	 43.83	0	4376746..4378860	+	704	145601050	-	YPDSF_3808	-	hypothetical protein
3728	 50.00	0	4378869..4379054	-	61	145601051	-	YPDSF_3809	-	hypothetical protein
3729	 45.75	0	4379231..4379689	+	152	145601052	-	YPDSF_3810	-	transposase for the IS1541 insertion element
3730	 42.92	-1	4379897..4380136	-	79	145601053	-	YPDSF_3811	-	hypothetical protein
3731	 50.88	0	4380796..4381644	+	282	145601054	-	YPDSF_3812	-	glycerol uptake facilitator protein
3732	 52.03	0	4381821..4383344	+	507	145601055	-	YPDSF_3813	-	hypothetical protein
3733	 52.42	0	4383581..4384591	+	336	145601056	glpX	YPDSF_3814	-	fructose 1,6-bisphosphatase II
3734	 52.07	0	4384746..4385492	+	248	145601057	-	YPDSF_3815	-	ferredoxin-NADP reductase
3735	 51.08	0	4385833..4386294	-	153	145601058	-	YPDSF_3816	-	hypothetical protein
3736	 45.13	0	4386415..4387050	+	211	145601059	-	YPDSF_3817	-	hypothetical protein
3737	 48.96	0	4387179..4387946	+	255	145601060	tpiA	YPDSF_3818	-	triosephosphate isomerase
3738	 50.08	0	4388178..4389413	-	411	145601061	-	YPDSF_3819	-	transcriptional regulator
3739	 51.63	0	4389550..4390287	+	245	145601062	-	YPDSF_3820	-	hypothetical protein
3740	 54.06	+1	4390284..4390997	+	237	145601063	-	YPDSF_3821	-	hypothetical protein
3741	 48.65	0	4392607..4393383	+	258	145601064	-	YPDSF_3824	-	hypothetical protein
3742	 46.16	0	4393633..4394622	-	329	145601065	-	YPDSF_3825	-	sulfate transporter subunit
3743	 47.15	0	4394843..4395826	-	327	145601066	-	YPDSF_3826	-	6-phosphofructokinase
3744	 48.50	0	4396044..4396946	-	300	145601067	fieF	YPDSF_3827	-	ferrous iron efflux protein F
3745	 51.04	0	4397508..4398467	-	319	145601068	-	YPDSF_3828	-	hypothetical protein
3746	 46.33	0	4398512..4398688	-	58	145601069	-	YPDSF_3829	-	hypothetical protein
3747	 46.08	0	4398784..4398987	+	67	145601070	-	YPDSF_3830	-	hypothetical protein
3748	 46.63	0	4399145..4399633	-	162	145601071	cpxP	YPDSF_3831	-	periplasmic stress adaptor protein CpxP
3749	 49.93	0	4399807..4400505	+	232	145601072	-	YPDSF_3832	-	DNA-binding transcriptional regulator CpxR
3750	 49.89	0	4400502..4401878	+	458	145601073	cpxA	YPDSF_3833	-	two-component sensor protein
3751	 52.02	0	4401927..4402991	-	354	145601074	-	YPDSF_3834	-	bifunctional regulatory protein/DNA repair protein
3752	 49.08	0	4403180..4403668	+	162	145601075	-	YPDSF_3835	-	methyltransferase
3753	 49.76	0	4403791..4404612	-	273	145601076	cysE	YPDSF_3836	-	serine acetyltransferase
3754	 51.57	0	4404878..4405897	-	339	145601077	gpsA	YPDSF_3837	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
3755	 48.43	0	4405897..4406373	-	158	145601078	-	YPDSF_3838	-	preprotein translocase subunit SecB
3756	 51.41	0	4406461..4406709	-	82	145601079	-	YPDSF_3839	-	glutaredoxin 3
3757	 45.06	0	4406828..4407262	-	144	145601080	-	YPDSF_3840	-	hypothetical protein
3758	 50.13	0	4407659..4409206	+	515	145601081	-	YPDSF_3841	-	phosphoglyceromutase
3759	 50.04	0	4409216..4410586	+	456	145601082	-	YPDSF_3842	-	hypothetical protein
3760	 50.46	0	4410610..4411047	+	145	145601083	-	YPDSF_3843	-	hypothetical protein
3761	 47.50	0	4411044..4411544	+	166	145601084	-	YPDSF_3844	-	hypothetical protein
3762	 48.15	0	4411682..4412707	-	341	145601085	tdh	YPDSF_3845	-	L-threonine 3-dehydrogenase
3763	 50.08	0	4412717..4413928	-	403	145601086	-	YPDSF_3846	-	2-amino-3-ketobutyrate coenzyme A ligase
3764	 45.12	0	4414174..4415106	+	310	145601087	rfaD	YPDSF_3847	-	ADP-L-glycero-D-mannoheptose-6-epimerase
3765	 51.74	0	4415137..4416201	+	354	145601088	-	YPDSF_3848	-	ADP-heptose:LPS heptosyltransferase II
3766	 50.72	0	4416201..4417166	+	321	145601089	-	YPDSF_3849	-	ADP-heptose:LPS heptosyl transferase I
3767	 49.71	0	4417478..4418863	+	461	145601090	-	YPDSF_3850	-	3-deoxy-D-manno-octulosonic-acid transferase
3768	 46.62	0	4418864..4419646	+	260	145601091	-	YPDSF_3851	-	lipopolysaccharide core biosynthesis glycosyl transferase
3769	 46.25	0	4419643..4420122	+	159	145601092	coaD	YPDSF_3852	-	phosphopantetheine adenylyltransferase
3770	 48.51	0	4420091..4420927	-	278	145601093	-	YPDSF_3853	-	formamidopyrimidine-DNA glycosylase
3771	 39.29	-1	4421010..4421177	-	55	145601094	rpmG	YPDSF_3854	-	50S ribosomal protein L33
3772	 50.63	0	4421189..4421425	-	78	145601095	rpmB	YPDSF_3855	-	50S ribosomal protein L28
3773	 45.44	0	4421688..4422356	-	222	145601096	radC	YPDSF_3856	-	DNA repair protein RadC
3774	 47.67	0	4422436..4423767	+	443	145601097	-	YPDSF_3857	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
3775	 49.02	0	4423745..4424203	+	152	145601098	dut	YPDSF_3858	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3776	 47.91	0	4424325..4424921	+	198	145601099	slmA	YPDSF_3859	-	nucleoid occlusion protein
3777	 50.77	0	4425056..4425703	-	215	145601100	pyrE	YPDSF_3860	-	orotate phosphoribosyltransferase
3778	 51.32	0	4425870..4426586	-	238	145601101	rph	YPDSF_3861	-	ribonuclease PH
3779	 48.50	0	4426713..4427576	+	287	145601102	-	YPDSF_3862	-	hypothetical protein
3780	 47.28	0	4427979..4428602	+	207	145601103	-	YPDSF_3863	-	membrane protein
3781	 48.12	0	4428615..4430318	-	567	145601104	ligB	YPDSF_3864	-	NAD-dependent DNA ligase LigB
3782	 46.47	0	4430719..4431342	+	207	145601105	gmk	YPDSF_3865	-	guanylate kinase
3783	 51.31	0	4431397..4431663	+	88	145601106	-	YPDSF_3866	-	DNA-directed RNA polymerase, omega chain
3784	 48.93	0	4431683..4433791	+	702	145601107	-	YPDSF_3867	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
3785	 49.64	0	4433797..4434489	+	230	145601108	-	YPDSF_3868	-	tRNA guanosine-2'-O-methyltransferase
3786	 51.63	0	4434490..4436571	+	693	145601109	-	YPDSF_3869	-	ATP-dependent DNA helicase RecG
3787	 50.04	0	4436937..4438151	-	404	145601110	-	YPDSF_3870	-	sodium/glutamate symport carrier protein
3788	 50.67	0	4438356..4439774	+	472	145601111	-	YPDSF_3871	-	membrane permease
3789	 48.30	0	4439922..4441631	+	569	145601112	-	YPDSF_3872	-	exported protein
3790	 50.97	0	4441766..4442689	-	307	145601113	-	YPDSF_3873	-	hypothetical protein
3791	 52.79	0	4442959..4443981	+	340	145601114	-	YPDSF_3874	-	transposase
3792	 50.38	0	4443981..4444760	+	259	145601115	-	YPDSF_3875	-	transposase/IS protein
3793	 48.86	0	4444834..4445271	-	145	145601116	-	YPDSF_3876	-	D-tyrosyl-tRNA deacylase
3794	 48.36	0	4445278..4446222	-	314	145601117	rbn	YPDSF_3877	-	ribonuclease BN
3795	 44.16	0	4446259..4446849	-	196	145601118	-	YPDSF_3878	-	phosphatase
3796	 49.01	0	4447171..4448994	-	607	145601119	-	YPDSF_3879	-	GTPase
3797	 50.78	0	4449556..4450965	+	469	145601120	glnA	YPDSF_3880	-	glutamine synthetase
3798	 49.26	0	4451188..4452267	+	359	145601121	glnL	YPDSF_3881	-	nitrogen regulation protein NR(II)
3799	 52.65	0	4452275..4453687	+	470	145601122	glnG	YPDSF_3882	-	nitrogen regulation protein NR(I)
3800	 47.74	0	4453741..4455114	-	457	145601123	-	YPDSF_3883	-	coproporphyrinogen III oxidase
3801	 48.50	0	4455297..4455863	-	188	145601124	-	YPDSF_3884	-	hypothetical protein
3802	 46.54	0	4456608..4457258	+	216	145601125	-	YPDSF_3885	-	GTPase EngB
3803	 47.48	0	4457666..4460464	-	932	145601126	-	YPDSF_3886	-	DNA polymerase I
3804	 42.15	-1	4460956..4461579	-	207	145601127	-	YPDSF_3887	-	periplasmic protein disulfide isomerase I
3805	 46.50	0	4461607..4462593	-	328	145601128	-	YPDSF_3888	-	serine/threonine protein kinase
3806	 41.11	-1	4462684..4462953	-	89	145601129	-	YPDSF_3889	-	hypothetical protein
3807	 43.54	0	4463107..4463694	+	195	145601130	mobA	YPDSF_3890	-	molybdopterin-guanine dinucleotide biosynthesis protein A
3808	 40.68	-1	4463694..4464224	+	176	145601131	-	YPDSF_3891	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3809	 49.55	0	4464282..4465490	-	402	145601132	-	YPDSF_3892	-	transposase for the IS285 insertion element
3810	 44.06	0	4471691..4472380	+	229	145601133	-	YPDSF_3893	-	GntR-famly transcriptional regulator
3811	 46.46	0	4472460..4473884	+	474	145601134	-	YPDSF_3894	-	membrane transport protein
3812	 49.71	0	4473881..4474051	-	56	145601135	-	YPDSF_3895	-	hypothetical protein
3813	 48.10	0	4475081..4475500	-	139	145601136	-	YPDSF_3898	-	D-ribose pyranase
3814	 45.75	0	4475705..4477573	-	622	145601137	trkD	YPDSF_3899	-	potassium transport protein Kup
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.