version 1.0
Yersinia pestis Pestoides F, complete genome - 1..4517345 3850 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3659 45.02 0 4294246..4294767 + 173 145600982 - YPDSF_3735 - anti-RNA polymerase sigma 70 factor 3660 51.81 0 4295143..4297188 + 681 145600983 - YPDSF_3736 - thiamine biosynthesis protein ThiC 3661 53.33 +1 4297175..4297849 + 224 145600984 - YPDSF_3737 - thiamine-phosphate pyrophosphorylase 3662 54.01 +1 4297839..4298636 + 265 145600985 - YPDSF_3738 - thiamine biosynthesis protein ThiF 3663 49.54 0 4298633..4298848 + 71 145600986 - YPDSF_3739 - sulfur carrier protein ThiS 3664 51.19 0 4301082..4305338 - 1418 145600987 - YPDSF_3744 - DNA-directed RNA polymerase subunit beta' 3665 49.37 0 4305431..4309459 - 1342 145600988 rpoB YPDSF_3745 - DNA-directed RNA polymerase subunit beta 3666 46.88 0 4309802..4310170 - 122 145600989 rplL YPDSF_3746 - 50S ribosomal protein L7/L12 3667 49.40 0 4310237..4310734 - 165 145600990 rplJ YPDSF_3747 - 50S ribosomal protein L10 3668 47.23 0 4311099..4311803 - 234 145600991 rplA YPDSF_3748 - 50S ribosomal protein L1 3669 48.72 0 4311807..4312235 - 142 145600992 rplK YPDSF_3749 - 50S ribosomal protein L11 3670 48.72 0 4312426..4312971 - 181 145600993 nusG YPDSF_3750 - transcription antitermination protein NusG 3671 48.70 0 4312973..4313356 - 127 145600994 secE YPDSF_3751 - preprotein translocase subunit SecE 3672 48.02 0 4313607..4314791 - 394 145600995 - YPDSF_3752 - elongation factor Tu 3673 50.00 0 4315848..4316033 - 61 145600996 - YPDSF_3753 - IS100 transposase 3674 51.27 0 4316116..4316628 - 170 145600997 - YPDSF_3754 - IS100 transposase 3675 52.79 0 4316628..4317650 - 340 145600998 - YPDSF_3755 - transposase for insertion sequence IS100 3676 47.75 0 4318267..4319730 - 487 145600999 - YPDSF_3756 - hypothetical protein 3677 48.26 0 4319942..4320142 + 66 145601000 - YPDSF_3757 - hypothetical protein 3678 49.00 0 4320198..4321601 - 467 145601001 - YPDSF_3758 - amino acid permease 3679 50.75 0 4322019..4323551 - 510 145601002 - YPDSF_3759 - histidine ammonia-lyase 3680 51.24 0 4323548..4325239 - 563 145601003 - YPDSF_3760 - urocanate hydratase 3681 37.57 -2 4325966..4326910 + 314 145601004 - YPDSF_3761 - pyridoxal-phosphate dependent protein 3682 36.33 -2 4326907..4327473 + 188 145601005 - YPDSF_3762 - adenine phosphoribosyltransferase 3683 41.08 -1 4327556..4328485 + 309 145601006 - YPDSF_3763 - hypothetical protein 3684 45.54 0 4328487..4329731 + 414 145601007 - YPDSF_3764 - hypothetical protein 3685 47.69 0 4330254..4331207 + 317 145601008 - YPDSF_3765 - iron transport protein 3686 49.90 0 4331217..4332176 + 319 145601009 - YPDSF_3766 - iron transport permease 3687 46.23 0 4332166..4333173 + 335 145601010 - YPDSF_3767 - iron transport permease 3688 44.01 0 4333170..4333928 + 252 145601011 - YPDSF_3768 - iron ABC transporter, ATP-binding protein 3689 39.78 -1 4334661..4334846 - 61 145601012 - YPDSF_3770 - hypothetical protein 3690 43.80 0 4335778..4336140 + 120 145601013 - YPDSF_3771 - regulator 3691 53.29 +1 4336333..4336818 + 161 145601014 - YPDSF_3772 - transposase 3692 49.66 0 4336818..4337111 + 97 145601015 - YPDSF_3773 - hypothetical protein 3693 31.43 -2 4337798..4339270 - 490 145601016 - YPDSF_3774 - hypothetical protein 3694 45.98 0 4339164..4340357 - 397 145601017 - YPDSF_3775 - phage integrase 3695 48.41 0 4340743..4341936 - 397 145601018 - YPDSF_3776 - AraC family transcription regulator 3696 52.07 0 4342026..4343210 - 394 145601019 - YPDSF_3777 - sugar transport system permease protein 3697 48.40 0 4343197..4344729 - 510 145601020 - YPDSF_3778 - xylose transporter ATP-binding subunit 3698 41.97 -1 4344937..4345932 - 331 145601021 xylF YPDSF_3779 - D-xylose transporter subunit XylF 3699 48.79 0 4346395..4347714 + 439 145601022 - YPDSF_3780 - xylose isomerase 3700 52.99 +1 4347838..4349292 + 484 145601023 - YPDSF_3781 - xylulose kinase 3701 41.54 -1 4349410..4350396 - 328 145601024 - YPDSF_3782 - hypothetical protein 3702 42.71 -1 4350435..4351202 - 255 145601025 - YPDSF_3783 - fimbrial chaperone 3703 49.06 0 4351295..4351930 - 211 145601026 - YPDSF_3784 - outer membrane fimbrial usher porin 3704 44.81 0 4351956..4353785 - 609 145601027 - YPDSF_3785 - hypothetical protein 3705 46.06 0 4353861..4354418 - 185 145601028 - YPDSF_3786 - fimbrial protein 3706 46.42 0 4355295..4356287 - 330 145601029 - YPDSF_3787 - hypothetical protein 3707 49.19 0 4356491..4357165 + 224 145601030 - YPDSF_3788 - insertion element IS1661 DNA-binding protein 3708 46.44 0 4357219..4358004 + 261 145601031 - YPDSF_3789 - transposase for insertion sequence IS1661 3709 49.94 0 4358174..4359058 - 294 145601032 metF YPDSF_3790 - 5,10-methylenetetrahydrofolate reductase 3710 52.59 0 4359291..4361726 - 811 145601033 metL YPDSF_3791 - bifunctional aspartate kinase II/homoserine dehydrogenase II 3711 52.11 0 4361729..4362889 - 386 145601034 - YPDSF_3792 - cystathionine gamma-synthase 3712 49.37 0 4363267..4363584 + 105 145601035 - YPDSF_3793 - transcriptional repressor protein MetJ 3713 40.35 -1 4363556..4363726 + 56 145601036 - YPDSF_3794 - hypothetical protein 3714 42.95 -1 4363921..4364388 + 155 145601037 - YPDSF_3795 - hypothetical protein 3715 49.07 0 4364914..4365129 - 71 145601038 rpmE YPDSF_3796 - 50S ribosomal protein L31 3716 52.89 +1 4365382..4367580 + 732 145601039 - YPDSF_3797 - primosome assembly protein PriA 3717 48.66 0 4367957..4368961 + 334 145601040 - YPDSF_3798 - DNA-binding transcriptional regulator CytR 3718 53.07 +1 4369027..4369872 + 281 145601041 - YPDSF_3799 - cell division protein FtsN 3719 48.76 0 4369972..4370496 + 174 145601042 - YPDSF_3800 - ATP-dependent protease peptidase subunit 3720 48.80 0 4370567..4371898 + 443 145601043 hslU YPDSF_3801 - ATP-dependent protease ATP-binding subunit 3721 48.82 0 4372122..4373051 + 309 145601044 - YPDSF_3802 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3722 47.53 0 4373193..4373678 + 161 145601045 - YPDSF_3803 - ribonuclease activity regulator protein RraA 3723 53.16 +1 4373795..4374379 - 194 145601046 - YPDSF_3804 - hypothetical protein 3724 29.33 -2 4374685..4374834 - 49 145601047 - YPDSF_3805 - hypothetical protein 3725 45.83 0 4375009..4375248 - 79 145601048 - YPDSF_3806 - hypothetical protein 3726 39.13 -1 4375461..4376753 + 430 145601049 - YPDSF_3807 - hypothetical protein 3727 43.83 0 4376746..4378860 + 704 145601050 - YPDSF_3808 - hypothetical protein 3728 50.00 0 4378869..4379054 - 61 145601051 - YPDSF_3809 - hypothetical protein 3729 45.75 0 4379231..4379689 + 152 145601052 - YPDSF_3810 - transposase for the IS1541 insertion element 3730 42.92 -1 4379897..4380136 - 79 145601053 - YPDSF_3811 - hypothetical protein 3731 50.88 0 4380796..4381644 + 282 145601054 - YPDSF_3812 - glycerol uptake facilitator protein 3732 52.03 0 4381821..4383344 + 507 145601055 - YPDSF_3813 - hypothetical protein 3733 52.42 0 4383581..4384591 + 336 145601056 glpX YPDSF_3814 - fructose 1,6-bisphosphatase II 3734 52.07 0 4384746..4385492 + 248 145601057 - YPDSF_3815 - ferredoxin-NADP reductase 3735 51.08 0 4385833..4386294 - 153 145601058 - YPDSF_3816 - hypothetical protein 3736 45.13 0 4386415..4387050 + 211 145601059 - YPDSF_3817 - hypothetical protein 3737 48.96 0 4387179..4387946 + 255 145601060 tpiA YPDSF_3818 - triosephosphate isomerase 3738 50.08 0 4388178..4389413 - 411 145601061 - YPDSF_3819 - transcriptional regulator 3739 51.63 0 4389550..4390287 + 245 145601062 - YPDSF_3820 - hypothetical protein 3740 54.06 +1 4390284..4390997 + 237 145601063 - YPDSF_3821 - hypothetical protein 3741 48.65 0 4392607..4393383 + 258 145601064 - YPDSF_3824 - hypothetical protein 3742 46.16 0 4393633..4394622 - 329 145601065 - YPDSF_3825 - sulfate transporter subunit 3743 47.15 0 4394843..4395826 - 327 145601066 - YPDSF_3826 - 6-phosphofructokinase 3744 48.50 0 4396044..4396946 - 300 145601067 fieF YPDSF_3827 - ferrous iron efflux protein F 3745 51.04 0 4397508..4398467 - 319 145601068 - YPDSF_3828 - hypothetical protein 3746 46.33 0 4398512..4398688 - 58 145601069 - YPDSF_3829 - hypothetical protein 3747 46.08 0 4398784..4398987 + 67 145601070 - YPDSF_3830 - hypothetical protein 3748 46.63 0 4399145..4399633 - 162 145601071 cpxP YPDSF_3831 - periplasmic stress adaptor protein CpxP 3749 49.93 0 4399807..4400505 + 232 145601072 - YPDSF_3832 - DNA-binding transcriptional regulator CpxR 3750 49.89 0 4400502..4401878 + 458 145601073 cpxA YPDSF_3833 - two-component sensor protein 3751 52.02 0 4401927..4402991 - 354 145601074 - YPDSF_3834 - bifunctional regulatory protein/DNA repair protein 3752 49.08 0 4403180..4403668 + 162 145601075 - YPDSF_3835 - methyltransferase 3753 49.76 0 4403791..4404612 - 273 145601076 cysE YPDSF_3836 - serine acetyltransferase 3754 51.57 0 4404878..4405897 - 339 145601077 gpsA YPDSF_3837 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3755 48.43 0 4405897..4406373 - 158 145601078 - YPDSF_3838 - preprotein translocase subunit SecB 3756 51.41 0 4406461..4406709 - 82 145601079 - YPDSF_3839 - glutaredoxin 3 3757 45.06 0 4406828..4407262 - 144 145601080 - YPDSF_3840 - hypothetical protein 3758 50.13 0 4407659..4409206 + 515 145601081 - YPDSF_3841 - phosphoglyceromutase 48.06 MEAN 4.80 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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