IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.06 STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3648	 49.34	0	4278277..4279032	-	251	145600971	-	YPDSF_3724	-	transposase
3649	 47.94	0	4279110..4279376	-	88	145600972	-	YPDSF_3725	-	helix-turn-helix, Fis-type
3650	 51.38	0	4285640..4287229	+	529	145600973	purH	YPDSF_3726	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3651	 51.67	0	4287289..4288575	+	428	145600974	-	YPDSF_3727	-	phosphoribosylamine--glycine ligase
3652	 53.21	+1	4288742..4289395	-	217	145600975	-	YPDSF_3728	-	hypothetical protein
3653	 45.29	0	4289445..4289720	-	91	145600976	-	YPDSF_3729	-	transcriptional regulator HU subunit alpha
3654	 44.16	0	4289909..4290499	-	196	145600977	-	YPDSF_3730	-	hypothetical protein
3655	 51.96	0	4290545..4291285	-	246	145600978	-	YPDSF_3731	-	endonuclease V
3656	 51.22	0	4291315..4292382	-	355	145600979	hemE	YPDSF_3732	-	uroporphyrinogen decarboxylase
3657	 41.40	-1	4292501..4293244	-	247	145600980	-	YPDSF_3733	-	hypothetical protein
3658	 49.68	0	4293379..4294161	-	260	145600981	nudC	YPDSF_3734	-	NADH pyrophosphatase
3659	 45.02	0	4294246..4294767	+	173	145600982	-	YPDSF_3735	-	anti-RNA polymerase sigma 70 factor
3660	 51.81	0	4295143..4297188	+	681	145600983	-	YPDSF_3736	-	thiamine biosynthesis protein ThiC
3661	 53.33	+1	4297175..4297849	+	224	145600984	-	YPDSF_3737	-	thiamine-phosphate pyrophosphorylase
3662	 54.01	+1	4297839..4298636	+	265	145600985	-	YPDSF_3738	-	thiamine biosynthesis protein ThiF
3663	 49.54	0	4298633..4298848	+	71	145600986	-	YPDSF_3739	-	sulfur carrier protein ThiS
3664	 51.19	0	4301082..4305338	-	1418	145600987	-	YPDSF_3744	-	DNA-directed RNA polymerase subunit beta'
3665	 49.37	0	4305431..4309459	-	1342	145600988	rpoB	YPDSF_3745	-	DNA-directed RNA polymerase subunit beta
3666	 46.88	0	4309802..4310170	-	122	145600989	rplL	YPDSF_3746	-	50S ribosomal protein L7/L12
3667	 49.40	0	4310237..4310734	-	165	145600990	rplJ	YPDSF_3747	-	50S ribosomal protein L10
3668	 47.23	0	4311099..4311803	-	234	145600991	rplA	YPDSF_3748	-	50S ribosomal protein L1
3669	 48.72	0	4311807..4312235	-	142	145600992	rplK	YPDSF_3749	-	50S ribosomal protein L11
3670	 48.72	0	4312426..4312971	-	181	145600993	nusG	YPDSF_3750	-	transcription antitermination protein NusG
3671	 48.70	0	4312973..4313356	-	127	145600994	secE	YPDSF_3751	-	preprotein translocase subunit SecE
3672	 48.02	0	4313607..4314791	-	394	145600995	-	YPDSF_3752	-	elongation factor Tu
3673	 50.00	0	4315848..4316033	-	61	145600996	-	YPDSF_3753	-	IS100 transposase
3674	 51.27	0	4316116..4316628	-	170	145600997	-	YPDSF_3754	-	IS100 transposase
3675	 52.79	0	4316628..4317650	-	340	145600998	-	YPDSF_3755	-	transposase for insertion sequence IS100
3676	 47.75	0	4318267..4319730	-	487	145600999	-	YPDSF_3756	-	hypothetical protein
3677	 48.26	0	4319942..4320142	+	66	145601000	-	YPDSF_3757	-	hypothetical protein
3678	 49.00	0	4320198..4321601	-	467	145601001	-	YPDSF_3758	-	amino acid permease
3679	 50.75	0	4322019..4323551	-	510	145601002	-	YPDSF_3759	-	histidine ammonia-lyase
3680	 51.24	0	4323548..4325239	-	563	145601003	-	YPDSF_3760	-	urocanate hydratase
3681	 37.57	-2	4325966..4326910	+	314	145601004	-	YPDSF_3761	-	pyridoxal-phosphate dependent protein
3682	 36.33	-2	4326907..4327473	+	188	145601005	-	YPDSF_3762	-	adenine phosphoribosyltransferase
3683	 41.08	-1	4327556..4328485	+	309	145601006	-	YPDSF_3763	-	hypothetical protein
3684	 45.54	0	4328487..4329731	+	414	145601007	-	YPDSF_3764	-	hypothetical protein
3685	 47.69	0	4330254..4331207	+	317	145601008	-	YPDSF_3765	-	iron transport protein
3686	 49.90	0	4331217..4332176	+	319	145601009	-	YPDSF_3766	-	iron transport permease
3687	 46.23	0	4332166..4333173	+	335	145601010	-	YPDSF_3767	-	iron transport permease
3688	 44.01	0	4333170..4333928	+	252	145601011	-	YPDSF_3768	-	iron ABC transporter, ATP-binding protein
3689	 39.78	-1	4334661..4334846	-	61	145601012	-	YPDSF_3770	-	hypothetical protein
3690	 43.80	0	4335778..4336140	+	120	145601013	-	YPDSF_3771	-	regulator
3691	 53.29	+1	4336333..4336818	+	161	145601014	-	YPDSF_3772	-	transposase
3692	 49.66	0	4336818..4337111	+	97	145601015	-	YPDSF_3773	-	hypothetical protein
3693	 31.43	-2	4337798..4339270	-	490	145601016	-	YPDSF_3774	-	hypothetical protein
3694	 45.98	0	4339164..4340357	-	397	145601017	-	YPDSF_3775	-	phage integrase
3695	 48.41	0	4340743..4341936	-	397	145601018	-	YPDSF_3776	-	AraC family transcription regulator
3696	 52.07	0	4342026..4343210	-	394	145601019	-	YPDSF_3777	-	sugar transport system permease protein
3697	 48.40	0	4343197..4344729	-	510	145601020	-	YPDSF_3778	-	xylose transporter ATP-binding subunit
3698	 41.97	-1	4344937..4345932	-	331	145601021	xylF	YPDSF_3779	-	D-xylose transporter subunit XylF
3699	 48.79	0	4346395..4347714	+	439	145601022	-	YPDSF_3780	-	xylose isomerase
3700	 52.99	+1	4347838..4349292	+	484	145601023	-	YPDSF_3781	-	xylulose kinase
3701	 41.54	-1	4349410..4350396	-	328	145601024	-	YPDSF_3782	-	hypothetical protein
3702	 42.71	-1	4350435..4351202	-	255	145601025	-	YPDSF_3783	-	fimbrial chaperone
3703	 49.06	0	4351295..4351930	-	211	145601026	-	YPDSF_3784	-	outer membrane fimbrial usher porin
3704	 44.81	0	4351956..4353785	-	609	145601027	-	YPDSF_3785	-	hypothetical protein
3705	 46.06	0	4353861..4354418	-	185	145601028	-	YPDSF_3786	-	fimbrial protein
3706	 46.42	0	4355295..4356287	-	330	145601029	-	YPDSF_3787	-	hypothetical protein
3707	 49.19	0	4356491..4357165	+	224	145601030	-	YPDSF_3788	-	insertion element IS1661 DNA-binding protein
3708	 46.44	0	4357219..4358004	+	261	145601031	-	YPDSF_3789	-	transposase for insertion sequence IS1661
3709	 49.94	0	4358174..4359058	-	294	145601032	metF	YPDSF_3790	-	5,10-methylenetetrahydrofolate reductase
3710	 52.59	0	4359291..4361726	-	811	145601033	metL	YPDSF_3791	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
3711	 52.11	0	4361729..4362889	-	386	145601034	-	YPDSF_3792	-	cystathionine gamma-synthase
3712	 49.37	0	4363267..4363584	+	105	145601035	-	YPDSF_3793	-	transcriptional repressor protein MetJ
3713	 40.35	-1	4363556..4363726	+	56	145601036	-	YPDSF_3794	-	hypothetical protein
3714	 42.95	-1	4363921..4364388	+	155	145601037	-	YPDSF_3795	-	hypothetical protein
3715	 49.07	0	4364914..4365129	-	71	145601038	rpmE	YPDSF_3796	-	50S ribosomal protein L31
3716	 52.89	+1	4365382..4367580	+	732	145601039	-	YPDSF_3797	-	primosome assembly protein PriA
3717	 48.66	0	4367957..4368961	+	334	145601040	-	YPDSF_3798	-	DNA-binding transcriptional regulator CytR
3718	 53.07	+1	4369027..4369872	+	281	145601041	-	YPDSF_3799	-	cell division protein FtsN
3719	 48.76	0	4369972..4370496	+	174	145601042	-	YPDSF_3800	-	ATP-dependent protease peptidase subunit
3720	 48.80	0	4370567..4371898	+	443	145601043	hslU	YPDSF_3801	-	ATP-dependent protease ATP-binding subunit
3721	 48.82	0	4372122..4373051	+	309	145601044	-	YPDSF_3802	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3722	 47.53	0	4373193..4373678	+	161	145601045	-	YPDSF_3803	-	ribonuclease activity regulator protein RraA
3723	 53.16	+1	4373795..4374379	-	194	145601046	-	YPDSF_3804	-	hypothetical protein
3724	 29.33	-2	4374685..4374834	-	49	145601047	-	YPDSF_3805	-	hypothetical protein
3725	 45.83	0	4375009..4375248	-	79	145601048	-	YPDSF_3806	-	hypothetical protein
3726	 39.13	-1	4375461..4376753	+	430	145601049	-	YPDSF_3807	-	hypothetical protein
3727	 43.83	0	4376746..4378860	+	704	145601050	-	YPDSF_3808	-	hypothetical protein
3728	 50.00	0	4378869..4379054	-	61	145601051	-	YPDSF_3809	-	hypothetical protein
3729	 45.75	0	4379231..4379689	+	152	145601052	-	YPDSF_3810	-	transposase for the IS1541 insertion element
3730	 42.92	-1	4379897..4380136	-	79	145601053	-	YPDSF_3811	-	hypothetical protein
3731	 50.88	0	4380796..4381644	+	282	145601054	-	YPDSF_3812	-	glycerol uptake facilitator protein
3732	 52.03	0	4381821..4383344	+	507	145601055	-	YPDSF_3813	-	hypothetical protein
3733	 52.42	0	4383581..4384591	+	336	145601056	glpX	YPDSF_3814	-	fructose 1,6-bisphosphatase II
3734	 52.07	0	4384746..4385492	+	248	145601057	-	YPDSF_3815	-	ferredoxin-NADP reductase
3735	 51.08	0	4385833..4386294	-	153	145601058	-	YPDSF_3816	-	hypothetical protein
3736	 45.13	0	4386415..4387050	+	211	145601059	-	YPDSF_3817	-	hypothetical protein
3737	 48.96	0	4387179..4387946	+	255	145601060	tpiA	YPDSF_3818	-	triosephosphate isomerase
3738	 50.08	0	4388178..4389413	-	411	145601061	-	YPDSF_3819	-	transcriptional regulator
3739	 51.63	0	4389550..4390287	+	245	145601062	-	YPDSF_3820	-	hypothetical protein
3740	 54.06	+1	4390284..4390997	+	237	145601063	-	YPDSF_3821	-	hypothetical protein
3741	 48.65	0	4392607..4393383	+	258	145601064	-	YPDSF_3824	-	hypothetical protein
3742	 46.16	0	4393633..4394622	-	329	145601065	-	YPDSF_3825	-	sulfate transporter subunit
3743	 47.15	0	4394843..4395826	-	327	145601066	-	YPDSF_3826	-	6-phosphofructokinase
3744	 48.50	0	4396044..4396946	-	300	145601067	fieF	YPDSF_3827	-	ferrous iron efflux protein F
3745	 51.04	0	4397508..4398467	-	319	145601068	-	YPDSF_3828	-	hypothetical protein
3746	 46.33	0	4398512..4398688	-	58	145601069	-	YPDSF_3829	-	hypothetical protein
3747	 46.08	0	4398784..4398987	+	67	145601070	-	YPDSF_3830	-	hypothetical protein
48.06	MEAN

4.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.